WERAM Information


Tag Content
WERAM ID WERAM-Bro-0099
Ensembl Protein ID Bo5g118460.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo5g118460 Bo5g118460.1 Bo5g118460.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 2.10e-117 393.4 146 458
HDAC Class-I 1.20e-34 121.9 271 452
Organism Brassica oleracea
Domain Profile
  HDAC Class-II

   class-2.txt   2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsiylesk 97 
+++ +de+ml h+ e + + hpE+p+R++ai +l++ag+ + +++ ++ar+ tk+elq+vH++ehv+ ++ +++l + + ++y+++
Bo5g118460.1 146 TAVGFDERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPgRCLPIHAREITKQELQMVHTSEHVDAVNITSQLLYSYFT------TDTYANEY 236
6799***********************************998769***************************99655555444......478***** PP
class-2.txt 98 sikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylSlH 194
s++aarla+G + +l++++ +g++kngfa+vRPPGHHa ++amGFCl+nn+avaa ++q + +k+livDwDvHhGnGtqeif+++++vly+SlH
Bo5g118460.1 237 SARAARLAAGLCADLATEIYSGRVKNGFALVRPPGHHAGIKHAMGFCLHNNAAVAALVAQAAGA-RKVLIVDWDVHHGNGTQEIFEQNKSVLYISLH 332
********************************************************99887766.******************************** PP
class-2.txt 195 RydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkqllkl 291
R++ g+f+p g+ga+ evg++ +eg+ vNv+w++g++gd++y++af++vvlpia++F+Pd+v+vsaGfDaa+gdplg ++vt+++y+++t++l ++
Bo5g118460.1 333 RHEGGNFYP--GTGAAAEVGTNGAEGYCVNVPWSCGGVGDKDYIYAFQHVVLPIASQFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQMLGDI 427
*********..************************************************************************************** PP
class-2.txt 292 aggrvvlvlEGGynlkaiaeaveavvkaLlg 322
+gg+++++lEGGynl++i+++++av+k+Llg
Bo5g118460.1 428 CGGKMLVILEGGYNLRSISSSATAVIKVLLG 458
*****************************96 PP

  HDAC Class-I

   class-1.txt 131 lhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlk.dg 224
hha ++a Gfc n+ +a l + ++vl +d d+hhG+g +e f++ + v+ +s+h+++ +f+PgtG +vg++ y+vnvP + g
Bo5g118460.1 271 GHHAGIKHAMGFCLHNNAAVAALVAQAaGARKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGgNFYPGTGAAAEVGTNGAEGYCVNVPWScGG 367
49************999888777666548899*******************************97527************************98368 PP
class-1.txt 225 idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRcwtye 308
+ D+ y f++v+ ++ + f+P+ v++ G D+ gD+lg+ +++ g++++ +++ + ++lv+ GGY+lr ++ t
Bo5g118460.1 368 VGDKDYIYAFQHVVLPIASQFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQMLGDIcGGKMLVILEGGYNLRSISSSATAV 452
*********************************************************9987999************999776655 PP

Protein Sequence
(Fasta)
MVVETLDSSC DGSKRKHANG GEETHLDELS NGDTGVSSSK RARVSRGEMT FQDIYGADAL 60
LNEEDEEDDS DWEPVLQNIP VEFVKWCCVN CTMANPGDMV HCYICGEHKE SGILRHGYLA 120
SPFFKDTGLT EVEEKCGGSS SATSSTAVGF DERMLLHSEF EVKAQPHPER PDRLRAIAAS 180
LATAGVFPGR CLPIHAREIT KQELQMVHTS EHVDAVNITS QLLYSYFTTD TYANEYSARA 240
ARLAAGLCAD LATEIYSGRV KNGFALVRPP GHHAGIKHAM GFCLHNNAAV AALVAQAAGA 300
RKVLIVDWDV HHGNGTQEIF EQNKSVLYIS LHRHEGGNFY PGTGAAAEVG TNGAEGYCVN 360
VPWSCGGVGD KDYIYAFQHV VLPIASQFSP DFVIVSAGFD AARGDPLGCC DVTPAGYSRM 420
TQMLGDICGG KMLVILEGGY NLRSISSSAT AVIKVLLGEN PENDDLPIAT TPSKAGLETV 480
LDVMNIQMKF WPSLATAYSN LLSEWETRLI ENKKNQVKRK LVRVPTWWKW GRKKFMYRFL 540
SARI 544
Nucleotide Sequence
(Fasta)
ATGGTTGTAG AAACTCTGGA CAGTTCCTGT GACGGTTCAA AGAGAAAACA TGCCAACGGT 60
GGTGAAGAAA CTCACCTCGA TGAGCTTAGC AATGGAGACA CTGGAGTTTC ATCATCTAAA 120
AGAGCTAGGG TTTCAAGAGG AGAAATGACG TTTCAGGATA TCTACGGTGC AGATGCATTG 180
CTGAATGAAG AAGATGAGGA GGATGATAGT GATTGGGAGC CTGTGCTGCA GAATATTCCC 240
GTTGAGTTTG TGAAATGGTG TTGCGTTAAT TGCACTATGG CGAATCCTGG TGATATGGTC 300
CATTGTTATA TATGTGGAGA GCACAAGGAA TCTGGCATCC TCAGGCATGG ATACTTAGCA 360
TCTCCTTTTT TCAAAGACAC TGGTCTCACT GAAGTCGAAG AGAAATGTGG AGGAAGCTCA 420
TCTGCAACTA GCTCAACAGC TGTTGGTTTC GACGAGAGAA TGTTGCTACA CTCTGAATTC 480
GAAGTGAAGG CACAACCACA TCCCGAGAGA CCTGATCGTC TTCGCGCTAT AGCTGCTAGT 540
CTTGCCACTG CTGGCGTCTT TCCTGGAAGA TGCTTGCCTA TTCATGCAAG GGAAATCACG 600
AAACAAGAGC TCCAGATGGT CCACACTTCA GAGCATGTTG ACGCTGTTAA TATCACAAGC 660
CAGCTTCTCT ACAGCTACTT CACCACTGAT ACATATGCTA ACGAGTATTC AGCACGTGCT 720
GCTAGACTTG CAGCAGGTTT ATGCGCTGAC CTTGCTACAG AAATTTACTC TGGCCGTGTA 780
AAAAATGGTT TCGCTTTGGT TAGACCTCCT GGTCACCATG CTGGCATCAA ACATGCTATG 840
GGGTTTTGCC TTCACAATAA TGCAGCTGTT GCTGCATTAG TAGCACAGGC AGCAGGGGCA 900
AGGAAGGTGC TGATTGTGGA CTGGGATGTC CATCATGGAA ATGGAACCCA AGAGATATTC 960
GAGCAAAACA AATCTGTACT GTACATTTCC TTGCACAGAC ATGAAGGGGG GAACTTTTAT 1020
CCTGGTACTG GAGCTGCTGC TGAGGTTGGT ACAAATGGTG CTGAAGGTTA TTGTGTAAAT 1080
GTTCCATGGA GTTGTGGTGG AGTTGGTGAT AAAGACTACA TCTATGCCTT TCAGCATGTG 1140
GTTTTACCCA TAGCTTCTCA ATTTTCTCCT GATTTTGTCA TCGTATCAGC TGGATTTGAT 1200
GCGGCTAGAG GAGACCCATT AGGATGCTGT GATGTAACTC CAGCTGGTTA TTCTCGAATG 1260
ACACAGATGT TGGGTGATAT CTGCGGTGGG AAAATGCTAG TTATTCTCGA GGGCGGCTAC 1320
AATCTTCGCT CCATCTCTTC TTCTGCTACA GCAGTGATCA AGGTGCTTCT GGGTGAAAAT 1380
CCTGAGAATG ACGACTTGCC TATAGCTACC ACGCCTTCAA AAGCCGGCTT AGAAACTGTT 1440
CTTGATGTAA TGAATATCCA AATGAAGTTC TGGCCATCAC TTGCTACCGC CTACTCCAAT 1500
TTACTCTCAG AGTGGGAAAC ACGTCTGATC GAAAACAAAA AGAACCAGGT GAAAAGGAAG 1560
CTCGTTCGTG TTCCCACTTG GTGGAAATGG GGAAGGAAGA AGTTTATGTA CCGGTTTCTC 1620
TCTGCTCGTA TATGA 1636
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0115 Bra022329.1-P Brassica rapa 96 0.0 964
WERAM-Art-0072 AT3G18520.1 Arabidopsis thaliana 86 0.0 874
WERAM-Arl-0060 fgenesh2_kg.3__ 2057__ AT3G18520.1 Arabidopsis lyrata 87 0.0 870
WERAM-Thc-0030 EOY20940 Theobroma cacao 64 0.0 649
WERAM-Viv-0105 VIT_17s0000g04120.t01 Vitis vinifera 71 0.0 633
WERAM-Pot-0130 POPTR_0012s05730.1 Populus trichocarpa 68 4e-180 628
WERAM-Sot-0015 PGSC0003DMT400014582 Solanum tuberosum 63 8e-176 614
WERAM-Prp-0050 EMJ11455 Prunus persica 65 2e-174 609
WERAM-Sol-0057 Solyc03g119730.2.1 Solanum lycopersicum 62 6e-174 608
WERAM-Met-0113 KEH32089 Medicago truncatula 64 2e-172 602
WERAM-Glm-0224 GLYMA17G13000.1 Glycine max 64 8e-165 577
WERAM-Amt-0097 ERN15947 Amborella trichopoda 66 3e-163 572
WERAM-Mua-0121 GSMUA_Achr8P20260_001 Musa acuminata 63 1e-158 557
WERAM-Org-0071 ORGLA07G0034700.1 Oryza glaberrima 62 8e-148 521
WERAM-Orb-0071 OBART07G04070.1 Oryza barthii 62 2e-147 520
WERAM-Orp-0068 OPUNC07G03920.1 Oryza punctata 62 2e-145 513
WERAM-Tra-0242 Traes_5DS_18DC37E47.1 Triticum aestivum 63 8e-145 511
WERAM-Orbr-0079 OB07G13070.1 Oryza brachyantha 62 2e-144 509
WERAM-Orl-0056 KN539089.1_FGP007 Oryza longistaminata 62 5e-144 508
WERAM-Orr-0073 ORUFI07G03770.1 Oryza rufipogon 63 7e-144 508
WERAM-Orni-0070 ONIVA07G02650.1 Oryza nivara 63 8e-144 508
WERAM-Sem-0039 EFJ31239 Selaginella moellendorffii 60 5e-143 505
WERAM-Ors-0064 OS07T0164100-01 Oryza sativa 62 5e-143 505
WERAM-Ori-0081 BGIOSGA024767-PA Oryza indica 62 5e-143 505
WERAM-Orgl-0069 OGLUM07G03480.1 Oryza glumaepatula 62 8e-143 504
WERAM-Lep-0070 LPERR07G03600.1 Leersia perrieri 61 2e-142 503
WERAM-Sei-0111 Si029194m Setaria italica 61 2e-137 486
WERAM-Zem-0064 GRMZM2G107309_P01 Zea mays 60 4e-137 485
WERAM-Sob-0016 Sb02g003690.1 Sorghum bicolor 60 8e-136 481
WERAM-Hov-0036 MLOC_37038.1 Hordeum vulgare 68 1e-135 481
WERAM-Tru-0033 TRIUR3_17245-P1 Triticum urartu 55 6e-134 475
WERAM-Aet-0038 EMT15178 Aegilops tauschii 66 1e-131 467
WERAM-Php-0023 PP1S145_70V6.1 Physcomitrella patens 54 5e-128 455
WERAM-Brd-0030 BRADI1G56740.2 Brachypodium distachyon 68 3e-94 343
WERAM-Kop-0012 CAY68916 Komagataella pastoris 43 7e-77 285
WERAM-Caa-0034 KGT64501 Candida albicans 44 4e-75 280
WERAM-Orm-0067 OMERI07G02600.4 Oryza meridionalis 54 8e-74 275
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 44 4e-73 273
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 42 9e-73 271
WERAM-Coi-0028 EAS30926 Coccidioides immitis 45 9e-73 271
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 44 2e-72 270
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 42 8e-72 268
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 42 9e-72 268
WERAM-Usm-0012 UM02102P0 Ustilago maydis 45 2e-71 267
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 45 2e-71 267
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 43 3e-71 266
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 43 4e-71 266
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 43 4e-71 266
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 45 6e-71 265
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 44 1e-70 265
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 45 2e-70 264
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 44 2e-70 263
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 45 2e-70 263
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 45 3e-70 263
WERAM-Scp-0036 SPBC800.03.1:pep Schizosaccharomyces pombe 45 3e-70 263
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 41 4e-70 263
WERAM-Asg-0010 AAS51704 Ashbya gossypii 42 7e-70 262
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 43 1e-69 261
WERAM-Ran-0209 ENSRNOP00000009295.5 Rattus norvegicus 43 2e-69 261
WERAM-Pug-0031 EFP89333 Puccinia graminis 45 2e-69 261
WERAM-Cag-0018 CAG60803 Candida glabrata 41 2e-69 261
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 40 3e-69 260
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 41 3e-69 259
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 48 4e-69 259
WERAM-Sah-0012 ENSSHAP00000001165.1 Sarcophilus harrisii 46 7e-69 259
WERAM-Sac-0037 YNL021W Saccharomyces cerevisiae 41 8e-69 258
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 45 9e-69 258
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 44 1e-68 258
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 40 2e-68 257
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 43 2e-68 257
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 43 2e-68 257
WERAM-Zyt-0016 Mycgr3P37223 Zymoseptoria tritici 42 4e-68 256
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 44 7e-68 255
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 43 3e-67 253
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 43 3e-67 253
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 44 6e-67 252
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 44 7e-67 252
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 43 8e-67 252
WERAM-Aso-0015 CADAORAP00001816 Aspergillus oryzae 42 2e-66 250
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 42 4e-66 249
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 41 6e-66 249
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 41 8e-66 248
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 42 1e-65 248
WERAM-Mao-0002 MGG_01076T0 Magnaporthe oryzae 39 1e-65 248
WERAM-Ved-0005 EGY17208 Verticillium dahliae 39 1e-65 248
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 42 2e-65 247
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 43 3e-65 247
WERAM-Put-0014 PTTG_07163P0 Puccinia triticina 42 3e-65 246
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 43 4e-65 246
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 41 9e-65 245
WERAM-Orla-0013 ENSORLP00000001341.1 Oryzias latipes 40 9e-65 245
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 40 2e-64 244
WERAM-Trv-0041 EHK18675 Trichoderma virens 40 1e-63 241
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 42 1e-63 241
WERAM-Fuo-0035 FOXG_13914P0 Fusarium oxysporum 37 2e-63 241
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 39 2e-63 241
WERAM-Chg-0033 EAQ86725 Chaetomium globosum 40 5e-63 239
WERAM-Osl-0043 ABO96923 Ostreococcus lucimarinus 41 9e-63 238
WERAM-Gaga-0067 ENSGALP00000010190.4 Gallus gallus 42 1e-62 238
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 40 1e-62 238
WERAM-Nec-0012 EFNCRP00000001681 Neurospora crassa 41 2e-62 238
WERAM-Tag-0054 ENSTGUP00000003859.1 Taeniopygia guttata 42 2e-62 237
WERAM-Meg-0108 ENSMGAP00000010913.2 Meleagris gallopavo 43 2e-62 237
WERAM-Trr-0039 EGR46026 Trichoderma reesei 38 2e-62 237
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 42 2e-62 237
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 42 4e-62 236
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 42 4e-62 236
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 42 5e-62 236
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 42 5e-62 236
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 39 5e-62 236
WERAM-Gaa-0053 ENSGACP00000006953.1 Gasterosteus aculeatus 40 6e-62 236
WERAM-Pes-0124 ENSPSIP00000014863.1 Pelodiscus sinensis 42 1e-61 234
WERAM-Asfu-0010 CADAFUAP00002902 Aspergillus fumigatus 39 2e-61 234
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 41 2e-61 234
WERAM-Leo-0130 ENSLOCP00000016135.1 Lepisosteus oculatus 41 2e-61 234
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 41 2e-61 234
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 41 2e-61 234
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 39 4e-61 233
WERAM-Anp-0061 ENSAPLP00000006782.1 Anas platyrhynchos 42 4e-61 233
WERAM-Phn-0010 SNOT_01279 Phaeosphaeria nodorum 50 7e-61 232
WERAM-Gag-0014 GGTG_04308T0 Gaeumannomyces graminis 39 7e-61 232
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 41 9e-61 232
WERAM-Poa-0196 ENSPPYP00000022747.2 Pongo abelii 41 1e-60 231
WERAM-Nol-0078 ENSNLEP00000009627.2 Nomascus leucogenys 41 2e-60 231
WERAM-Loa-0049 ENSLAFP00000003605.3 Loxodonta africana 43 2e-60 231
WERAM-Tut-0056 ENSTTRP00000004443.1 Tursiops truncatus 46 4e-60 229
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 37 6e-60 229
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 41 8e-60 229
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 41 9e-60 228
WERAM-Chr-0002 EDP00159 Chlamydomonas reinhardtii 56 9e-60 228
WERAM-Pat-0158 ENSPTRP00000032389.5 Pan troglodytes 37 1e-59 228
Created Date 25-Jun-2016