Tag |
Content |
WERAM ID |
WERAM-Bro-0099 |
Ensembl Protein ID |
Bo5g118460.1 |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
2.10e-117 |
393.4 |
146 |
458 |
HDAC |
Class-I |
1.20e-34 |
121.9 |
271 |
452 |
|
Organism |
Brassica oleracea |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsiylesk 97 +++ +de+ml h+ e + + hpE+p+R++ai +l++ag+ + +++ ++ar+ tk+elq+vH++ehv+ ++ +++l + + ++y+++ Bo5g118460.1 146 TAVGFDERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPgRCLPIHAREITKQELQMVHTSEHVDAVNITSQLLYSYFT------TDTYANEY 236 6799***********************************998769***************************99655555444......478***** PP class-2.txt 98 sikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylSlH 194 s++aarla+G + +l++++ +g++kngfa+vRPPGHHa ++amGFCl+nn+avaa ++q + +k+livDwDvHhGnGtqeif+++++vly+SlH Bo5g118460.1 237 SARAARLAAGLCADLATEIYSGRVKNGFALVRPPGHHAGIKHAMGFCLHNNAAVAALVAQAAGA-RKVLIVDWDVHHGNGTQEIFEQNKSVLYISLH 332 ********************************************************99887766.******************************** PP class-2.txt 195 RydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkqllkl 291 R++ g+f+p g+ga+ evg++ +eg+ vNv+w++g++gd++y++af++vvlpia++F+Pd+v+vsaGfDaa+gdplg ++vt+++y+++t++l ++ Bo5g118460.1 333 RHEGGNFYP--GTGAAAEVGTNGAEGYCVNVPWSCGGVGDKDYIYAFQHVVLPIASQFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQMLGDI 427 *********..************************************************************************************** PP class-2.txt 292 aggrvvlvlEGGynlkaiaeaveavvkaLlg 322 +gg+++++lEGGynl++i+++++av+k+Llg Bo5g118460.1 428 CGGKMLVILEGGYNLRSISSSATAVIKVLLG 458 *****************************96 PP
HDAC Class-I
class-1.txt 131 lhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlk.dg 224 hha ++a Gfc n+ +a l + ++vl +d d+hhG+g +e f++ + v+ +s+h+++ +f+PgtG +vg++ y+vnvP + g Bo5g118460.1 271 GHHAGIKHAMGFCLHNNAAVAALVAQAaGARKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGgNFYPGTGAAAEVGTNGAEGYCVNVPWScGG 367 49************999888777666548899*******************************97527************************98368 PP class-1.txt 225 idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRcwtye 308 + D+ y f++v+ ++ + f+P+ v++ G D+ gD+lg+ +++ g++++ +++ + ++lv+ GGY+lr ++ t Bo5g118460.1 368 VGDKDYIYAFQHVVLPIASQFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQMLGDIcGGKMLVILEGGYNLRSISSSATAV 452 *********************************************************9987999************999776655 PP
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Protein Sequence (Fasta) | MVVETLDSSC DGSKRKHANG GEETHLDELS NGDTGVSSSK RARVSRGEMT FQDIYGADAL 60 LNEEDEEDDS DWEPVLQNIP VEFVKWCCVN CTMANPGDMV HCYICGEHKE SGILRHGYLA 120 SPFFKDTGLT EVEEKCGGSS SATSSTAVGF DERMLLHSEF EVKAQPHPER PDRLRAIAAS 180 LATAGVFPGR CLPIHAREIT KQELQMVHTS EHVDAVNITS QLLYSYFTTD TYANEYSARA 240 ARLAAGLCAD LATEIYSGRV KNGFALVRPP GHHAGIKHAM GFCLHNNAAV AALVAQAAGA 300 RKVLIVDWDV HHGNGTQEIF EQNKSVLYIS LHRHEGGNFY PGTGAAAEVG TNGAEGYCVN 360 VPWSCGGVGD KDYIYAFQHV VLPIASQFSP DFVIVSAGFD AARGDPLGCC DVTPAGYSRM 420 TQMLGDICGG KMLVILEGGY NLRSISSSAT AVIKVLLGEN PENDDLPIAT TPSKAGLETV 480 LDVMNIQMKF WPSLATAYSN LLSEWETRLI ENKKNQVKRK LVRVPTWWKW GRKKFMYRFL 540 SARI 544Protein Fasta Sequence
>Bo5g118460.1|Class-I|Brassica oleracea MVVETLDSSCDGSKRKHANGGEETHLDELSNGDTGVSSSKRARVSRGEMTFQDIYGADALLNEEDEEDDSDWEPVLQNIPVEFVKWCCVNCTMANPGDMVHCYICGEHKESGILRHGYLASPFFKDTGLTEVEEKCGGSSSATSSTAVGFDERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPGRCLPIHAREITKQELQMVHTSEHVDAVNITSQLLYSYFTTDTYANEYSARAARLAAGLCADLATEIYSGRVKNGFALVRPPGHHAGIKHAMGFCLHNNAAVAALVAQAAGARKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGNFYPGTGAAAEVGTNGAEGYCVNVPWSCGGVGDKDYIYAFQHVVLPIASQFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQMLGDICGGKMLVILEGGYNLRSISSSATAVIKVLLGENPENDDLPIATTPSKAGLETVLDVMNIQMKFWPSLATAYSNLLSEWETRLIENKKNQVKRKLVRVPTWWKWGRKKFMYRFLSARI
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Nucleotide Sequence (Fasta) | ATGGTTGTAG AAACTCTGGA CAGTTCCTGT GACGGTTCAA AGAGAAAACA TGCCAACGGT 60 GGTGAAGAAA CTCACCTCGA TGAGCTTAGC AATGGAGACA CTGGAGTTTC ATCATCTAAA 120 AGAGCTAGGG TTTCAAGAGG AGAAATGACG TTTCAGGATA TCTACGGTGC AGATGCATTG 180 CTGAATGAAG AAGATGAGGA GGATGATAGT GATTGGGAGC CTGTGCTGCA GAATATTCCC 240 GTTGAGTTTG TGAAATGGTG TTGCGTTAAT TGCACTATGG CGAATCCTGG TGATATGGTC 300 CATTGTTATA TATGTGGAGA GCACAAGGAA TCTGGCATCC TCAGGCATGG ATACTTAGCA 360 TCTCCTTTTT TCAAAGACAC TGGTCTCACT GAAGTCGAAG AGAAATGTGG AGGAAGCTCA 420 TCTGCAACTA GCTCAACAGC TGTTGGTTTC GACGAGAGAA TGTTGCTACA CTCTGAATTC 480 GAAGTGAAGG CACAACCACA TCCCGAGAGA CCTGATCGTC TTCGCGCTAT AGCTGCTAGT 540 CTTGCCACTG CTGGCGTCTT TCCTGGAAGA TGCTTGCCTA TTCATGCAAG GGAAATCACG 600 AAACAAGAGC TCCAGATGGT CCACACTTCA GAGCATGTTG ACGCTGTTAA TATCACAAGC 660 CAGCTTCTCT ACAGCTACTT CACCACTGAT ACATATGCTA ACGAGTATTC AGCACGTGCT 720 GCTAGACTTG CAGCAGGTTT ATGCGCTGAC CTTGCTACAG AAATTTACTC TGGCCGTGTA 780 AAAAATGGTT TCGCTTTGGT TAGACCTCCT GGTCACCATG CTGGCATCAA ACATGCTATG 840 GGGTTTTGCC TTCACAATAA TGCAGCTGTT GCTGCATTAG TAGCACAGGC AGCAGGGGCA 900 AGGAAGGTGC TGATTGTGGA CTGGGATGTC CATCATGGAA ATGGAACCCA AGAGATATTC 960 GAGCAAAACA AATCTGTACT GTACATTTCC TTGCACAGAC ATGAAGGGGG GAACTTTTAT 1020 CCTGGTACTG GAGCTGCTGC TGAGGTTGGT ACAAATGGTG CTGAAGGTTA TTGTGTAAAT 1080 GTTCCATGGA GTTGTGGTGG AGTTGGTGAT AAAGACTACA TCTATGCCTT TCAGCATGTG 1140 GTTTTACCCA TAGCTTCTCA ATTTTCTCCT GATTTTGTCA TCGTATCAGC TGGATTTGAT 1200 GCGGCTAGAG GAGACCCATT AGGATGCTGT GATGTAACTC CAGCTGGTTA TTCTCGAATG 1260 ACACAGATGT TGGGTGATAT CTGCGGTGGG AAAATGCTAG TTATTCTCGA GGGCGGCTAC 1320 AATCTTCGCT CCATCTCTTC TTCTGCTACA GCAGTGATCA AGGTGCTTCT GGGTGAAAAT 1380 CCTGAGAATG ACGACTTGCC TATAGCTACC ACGCCTTCAA AAGCCGGCTT AGAAACTGTT 1440 CTTGATGTAA TGAATATCCA AATGAAGTTC TGGCCATCAC TTGCTACCGC CTACTCCAAT 1500 TTACTCTCAG AGTGGGAAAC ACGTCTGATC GAAAACAAAA AGAACCAGGT GAAAAGGAAG 1560 CTCGTTCGTG TTCCCACTTG GTGGAAATGG GGAAGGAAGA AGTTTATGTA CCGGTTTCTC 1620 TCTGCTCGTA TATGA
1636Nucleotide Fasta Sequence
>Bo5g118460.1|Class-I|Brassica oleracea ATGGTTGTAGAAACTCTGGACAGTTCCTGTGACGGTTCAAAGAGAAAACATGCCAACGGTGGTGAAGAAACTCACCTCGATGAGCTTAGCAATGGAGACACTGGAGTTTCATCATCTAAAAGAGCTAGGGTTTCAAGAGGAGAAATGACGTTTCAGGATATCTACGGTGCAGATGCATTGCTGAATGAAGAAGATGAGGAGGATGATAGTGATTGGGAGCCTGTGCTGCAGAATATTCCCGTTGAGTTTGTGAAATGGTGTTGCGTTAATTGCACTATGGCGAATCCTGGTGATATGGTCCATTGTTATATATGTGGAGAGCACAAGGAATCTGGCATCCTCAGGCATGGATACTTAGCATCTCCTTTTTTCAAAGACACTGGTCTCACTGAAGTCGAAGAGAAATGTGGAGGAAGCTCATCTGCAACTAGCTCAACAGCTGTTGGTTTCGACGAGAGAATGTTGCTACACTCTGAATTCGAAGTGAAGGCACAACCACATCCCGAGAGACCTGATCGTCTTCGCGCTATAGCTGCTAGTCTTGCCACTGCTGGCGTCTTTCCTGGAAGATGCTTGCCTATTCATGCAAGGGAAATCACGAAACAAGAGCTCCAGATGGTCCACACTTCAGAGCATGTTGACGCTGTTAATATCACAAGCCAGCTTCTCTACAGCTACTTCACCACTGATACATATGCTAACGAGTATTCAGCACGTGCTGCTAGACTTGCAGCAGGTTTATGCGCTGACCTTGCTACAGAAATTTACTCTGGCCGTGTAAAAAATGGTTTCGCTTTGGTTAGACCTCCTGGTCACCATGCTGGCATCAAACATGCTATGGGGTTTTGCCTTCACAATAATGCAGCTGTTGCTGCATTAGTAGCACAGGCAGCAGGGGCAAGGAAGGTGCTGATTGTGGACTGGGATGTCCATCATGGAAATGGAACCCAAGAGATATTCGAGCAAAACAAATCTGTACTGTACATTTCCTTGCACAGACATGAAGGGGGGAACTTTTATCCTGGTACTGGAGCTGCTGCTGAGGTTGGTACAAATGGTGCTGAAGGTTATTGTGTAAATGTTCCATGGAGTTGTGGTGGAGTTGGTGATAAAGACTACATCTATGCCTTTCAGCATGTGGTTTTACCCATAGCTTCTCAATTTTCTCCTGATTTTGTCATCGTATCAGCTGGATTTGATGCGGCTAGAGGAGACCCATTAGGATGCTGTGATGTAACTCCAGCTGGTTATTCTCGAATGACACAGATGTTGGGTGATATCTGCGGTGGGAAAATGCTAGTTATTCTCGAGGGCGGCTACAATCTTCGCTCCATCTCTTCTTCTGCTACAGCAGTGATCAAGGTGCTTCTGGGTGAAAATCCTGAGAATGACGACTTGCCTATAGCTACCACGCCTTCAAAAGCCGGCTTAGAAACTGTTCTTGATGTAATGAATATCCAAATGAAGTTCTGGCCATCACTTGCTACCGCCTACTCCAATTTACTCTCAGAGTGGGAAACACGTCTGATCGAAAACAAAAAGAACCAGGTGAAAAGGAAGCTCGTTCGTGTTCCCACTTGGTGGAAATGGGGAAGGAAGAAGTTTATGTACCGGTTTCTCTCTGCTCGTATATGA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |