Tag |
Content |
WERAM ID |
WERAM-Orl-0056 |
Ensembl Protein ID |
KN539089.1_FGP007 |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
8.90e-114 |
380.6 |
580 |
892 |
HDAC |
Class-I |
6.10e-37 |
128.5 |
600 |
885 |
|
Organism |
Oryza longistaminata |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsi 92 +++ +de+ml h+ +e + + hpE+p+R++ai +l++ag+ + k++ + r+ tkeel+ vH+++h++ +e+++++ + + ++ KN539089.1_FGP007 580 TAVGFDERMLLHSEIEIKPNPHPERPDRLRAIAASLAAAGIFPsKCVMVPPREITKEELLRVHTSDHIDSVEQTKNMLYSYFT------SDT 665 6799***********************************999758*****************************665555444......478 PP class-2.txt 93 ylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifyk 184 y++ +s+ aa+la+G + +l++ +++g+++ngfa+vRPPGHHa ++amGFCl+nn+avaa +q+ +kk+livDwDvHhGnGtqeif KN539089.1_FGP007 666 YANGHSACAAKLAAGICADLANLIVSGRVHNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAQRAG-AKKVLIVDWDVHHGNGTQEIFDG 756 ************************************************************98777665.5********************** PP class-2.txt 185 dpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsv 276 d++vly+SlHR+++gsf+p g+ga++evg +g+gf+vN++w+ g++gd++y++af++vvlpia eF+Pd+ ++saGfDaa+gdplg ++v KN539089.1_FGP007 757 DNSVLYISLHRHEDGSFYP--GTGAAHEVGVMDGQGFSVNIPWSRGGVGDNDYIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDV 846 *******************..*********************************************************************** PP class-2.txt 277 takcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 t+++y++++ +l+ ++g+++++lEGGynl++i++++++vvk+Llg KN539089.1_FGP007 847 TPAGYSRMASMLTACSQGKLLVILEGGYNLRSISSSATEVVKVLLG 892 ********************************************96 PP
HDAC Class-I
class-1.txt 19 khpmkpkrlslth.eLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGas 109 hp +p rl+ + +L+ + k +v p++ ++eell++h+ ++i+ +++ ++ + ++ + ++ g+ + + c KN539089.1_FGP007 600 PHPERPDRLRAIAaSLAAAGIFPSKCVMVPPREITKEELLRVHTSDHIDSVEQTKNMLYSYFT--SDTYANGHSACAAKLAAGIC------- 682 589999999866516666666778888999999999********9999999887776666666..55677777666554444444....... PP class-1.txt 110 leaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkygee.f 197 + a+ + +++ + a+ G hha ++a Gfc n+ +a l ++ k+vl +d d+hhG+g +e f + v+ +s+h+++++ f KN539089.1_FGP007 683 ADLANLIVSGRVHngFAMVRPPG-HHAGVKQAMGFCLHNNAAVAALAAQRaGAKKVLIVDWDVHHGNGTQEIFDGDNSVLYISLHRHEDGsF 773 44444444443330044444444.999999**********99999999886799*********************************98549 PP class-1.txt 198 fPgtGdlsdvgaekgkyyavnvPl.kdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlp 287 +PgtG ++vg+ +g+ ++vn+P + g+ D+ y fk+v+ ++ f P++ ++ G D+ gD+lg+ +++ g++++ +++ + + KN539089.1_FGP007 774 YPGTGAAHEVGVMDGQGFSVNIPWsRGGVGDNDYIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMASMLTACsQGK 865 9**********************83568*******************************************************999987889 PP class-1.txt 288 llvlGGGGYtlrnvaRcwty 307 llv+ GGY+lr ++ t KN539089.1_FGP007 866 LLVILEGGYNLRSISSSATE 885 ************99976665 PP
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Protein Sequence (Fasta) | MNNLLTDSFE LPRGGSSRDG DIEMGMQADP SDNLKGFLKK VDAIESLIAK LTNLLHKLQT 60 ANEESKAVTK ARDMKAIKQR MEKDIDEVGK IARMAKTKVD ELEKDNLSNR QKPGCGKGSA 120 VDRSREQTTG VHKAMNSCSS TMLAKFYRAV KKKLKERMDD FQVLREAIRQ EYRDVVERRV 180 FTVTGSRPDE ETVDNLIETG RSEQIFQEAI QQQGRGQILD TVAEIQERHD AVRDLERKLL 240 ELQQIFMDMA VLVDAQGDMI NNIETHVSNA TNHIQQGVSA LQNAKKLQKN SRKWMCYAII 300 LLLIIVVIIV VAVIQPWKKA HSSGDAVSSS SSSTSSALKY LPSNRAPCRK SKFLSTLVFP 360 MLIFVVSQLQ IALHALMASD MRSLNSQKGQ SCGVSDQACH SKSKSGNDGK PSHAKANGVS 420 SLSGSHNDEK ILKENSVACN LNSDHANPLS VDGTKVSTAR SELIDSSGHD GCLHVKNESC 480 MACDDLLQES DKEQPGGTLE DLFSFNDEED DDSDWEPSAR LALSRWFCLN CTVPNMEGFT 540 HCQNCDELKG SVVVGYDAFK AHLAQAALLS ADAALPSVST AVGFDERMLL HSEIEIKPNP 600 HPERPDRLRA IAASLAAAGI FPSKCVMVPP REITKEELLR VHTSDHIDSV EQTKNMLYSY 660 FTSDTYANGH SACAAKLAAG ICADLANLIV SGRVHNGFAM VRPPGHHAGV KQAMGFCLHN 720 NAAVAALAAQ RAGAKKVLIV DWDVHHGNGT QEIFDGDNSV LYISLHRHED GSFYPGTGAA 780 HEVGVMDGQG FSVNIPWSRG GVGDNDYIFA FKHVVLPIAA EFAPDITIIS AGFDAARGDP 840 LGCCDVTPAG YSRMASMLTA CSQGKLLVIL EGGYNLRSIS SSATEVVKVL LGDSPVYDTD 900 ATEPSEEGIQ TVLQVLSIQQ QFWPVLVPSF ASVLALQRSV FSRYTTEVNK MKRKHAGGAG 960 PFWWKWGSKR LLYEVLFEGR CLRKTKDTGK EKLNDEAEP 999Protein Fasta Sequence
>KN539089.1_FGP007|Class-I|Oryza longistaminata MNNLLTDSFELPRGGSSRDGDIEMGMQADPSDNLKGFLKKVDAIESLIAKLTNLLHKLQTANEESKAVTKARDMKAIKQRMEKDIDEVGKIARMAKTKVDELEKDNLSNRQKPGCGKGSAVDRSREQTTGVHKAMNSCSSTMLAKFYRAVKKKLKERMDDFQVLREAIRQEYRDVVERRVFTVTGSRPDEETVDNLIETGRSEQIFQEAIQQQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVLVDAQGDMINNIETHVSNATNHIQQGVSALQNAKKLQKNSRKWMCYAIILLLIIVVIIVVAVIQPWKKAHSSGDAVSSSSSSTSSALKYLPSNRAPCRKSKFLSTLVFPMLIFVVSQLQIALHALMASDMRSLNSQKGQSCGVSDQACHSKSKSGNDGKPSHAKANGVSSLSGSHNDEKILKENSVACNLNSDHANPLSVDGTKVSTARSELIDSSGHDGCLHVKNESCMACDDLLQESDKEQPGGTLEDLFSFNDEEDDDSDWEPSARLALSRWFCLNCTVPNMEGFTHCQNCDELKGSVVVGYDAFKAHLAQAALLSADAALPSVSTAVGFDERMLLHSEIEIKPNPHPERPDRLRAIAASLAAAGIFPSKCVMVPPREITKEELLRVHTSDHIDSVEQTKNMLYSYFTSDTYANGHSACAAKLAAGICADLANLIVSGRVHNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAQRAGAKKVLIVDWDVHHGNGTQEIFDGDNSVLYISLHRHEDGSFYPGTGAAHEVGVMDGQGFSVNIPWSRGGVGDNDYIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMASMLTACSQGKLLVILEGGYNLRSISSSATEVVKVLLGDSPVYDTDATEPSEEGIQTVLQVLSIQQQFWPVLVPSFASVLALQRSVFSRYTTEVNKMKRKHAGGAGPFWWKWGSKRLLYEVLFEGRCLRKTKDTGKEKLNDEAEP
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Nucleotide Sequence (Fasta) | ATGAACAATC TCCTCACCGA TTCGTTTGAG CTCCCTCGGG GAGGCTCTTC AAGAGATGGG 60 GACATTGAAA TGGGAATGCA AGCTGATCCT TCAGACAATC TAAAAGGTTT CTTGAAAAAG 120 GTTGACGCAA TTGAAAGCCT AATTGCTAAG CTGACGAATC TCTTGCATAA GCTTCAGACT 180 GCAAATGAGG AATCCAAAGC GGTTACAAAA GCAAGGGACA TGAAAGCAAT TAAACAGAGG 240 ATGGAGAAAG ATATTGATGA AGTGGGGAAA ATCGCTCGCA TGGCAAAGAC AAAAGTTGAT 300 GAATTGGAAA AAGATAACTT ATCAAACAGA CAAAAGCCTG GATGCGGGAA AGGATCTGCG 360 GTAGATCGAT CAAGAGAACA GACTACTGGA GTGCATAAAG CCATGAATAG TTGTTCATCC 420 ACTATGCTTG CTAAATTCTA CAGAGCAGTG AAAAAGAAAT TGAAGGAGCG CATGGATGAT 480 TTTCAGGTTT TGAGAGAAGC AATCCGGCAG GAGTATCGTG ATGTCGTTGA AAGAAGGGTG 540 TTTACAGTAA CTGGTAGTCG TCCTGATGAA GAGACAGTTG ACAATTTAAT AGAGACTGGA 600 AGAAGTGAGC AAATTTTCCA AGAAGCTATC CAACAGCAGG GAAGAGGCCA AATACTGGAC 660 ACTGTTGCAG AGATACAGGA ACGTCACGAT GCTGTAAGAG ATCTAGAGAG GAAGCTTCTG 720 GAGTTGCAGC AGATATTCAT GGATATGGCA GTTTTGGTTG ATGCTCAAGG AGACATGATC 780 AACAACATAG AGACACATGT TTCAAATGCT ACCAACCACA TACAACAAGG CGTCAGTGCT 840 CTACAGAACG CGAAGAAGCT CCAGAAGAAC TCCAGGAAGT GGATGTGCTA CGCCATCATC 900 CTCCTGCTCA TCATAGTGGT GATCATTGTC GTCGCCGTCA TCCAGCCATG GAAGAAGGCT 960 CACTCATCTG GTGATGCAGT ATCGTCTTCG TCGTCGTCGA CGTCCAGTGC CTTGAAATAC 1020 TTGCCGTCCA ACAGGGCTCC CTGTCGGAAG TCCAAATTCT TATCCACTCT TGTGTTTCCT 1080 ATGCTGATCT TTGTCGTATC ACAATTACAG ATTGCGTTGC ATGCTCTGAT GGCGTCTGAT 1140 ATGAGGTCAC TCAACAGCCA AAAGGGACAG AGTTGTGGAG TTTCAGACCA AGCTTGCCAC 1200 AGCAAAAGCA AAAGCGGCAA TGATGGAAAA CCATCACATG CTAAAGCAAA TGGAGTTTCC 1260 TCGTTGAGCG GGAGTCATAA TGATGAGAAA ATTTTGAAAG AGAACTCTGT AGCATGCAAT 1320 TTAAATTCCG ACCATGCCAA TCCTTTATCA GTAGATGGGA CCAAAGTTTC TACAGCAAGG 1380 TCGGAACTTA TTGACAGTTC AGGTCATGAT GGTTGTCTGC ATGTCAAGAA TGAAAGCTGT 1440 ATGGCTTGTG ATGATCTGCT TCAAGAGTCT GACAAAGAAC AGCCTGGGGG TACACTGGAG 1500 GATCTATTTT CCTTTAATGA TGAAGAGGAT GATGACAGTG ACTGGGAACC CTCTGCTCGC 1560 CTTGCTTTGA GCAGGTGGTT TTGCTTGAAC TGTACAGTGC CAAACATGGA GGGGTTTACA 1620 CATTGTCAGA ATTGCGATGA GCTTAAGGGA TCTGTGGTAG TTGGATATGA TGCTTTCAAA 1680 GCTCATCTTG CACAGGCAGC TTTGTTATCT GCTGACGCAG CGCTGCCATC AGTATCTACA 1740 GCTGTCGGTT TTGATGAAAG AATGTTGCTC CATAGTGAGA TAGAGATTAA ACCAAATCCA 1800 CATCCAGAAA GGCCTGACCG CCTTCGTGCA ATCGCTGCCA GTCTTGCTGC TGCAGGTATC 1860 TTCCCTTCAA AATGTGTCAT GGTACCTCCT CGAGAAATCA CTAAGGAAGA ACTCCTAAGG 1920 GTCCATACTT CAGATCACAT TGACAGTGTT GAGCAGACAA AGAACATGCT TTACAGTTAC 1980 TTCACTTCAG ATACCTATGC AAATGGACAC TCAGCATGTG CTGCCAAACT TGCAGCAGGG 2040 ATATGTGCTG ATCTTGCTAA CTTGATAGTA TCTGGGCGTG TTCACAATGG ATTTGCAATG 2100 GTGAGACCTC CTGGCCATCA TGCAGGGGTG AAACAAGCCA TGGGTTTTTG TCTTCACAAT 2160 AACGCAGCAG TGGCTGCATT AGCTGCACAA AGAGCTGGTG CCAAGAAAGT CTTAATAGTT 2220 GACTGGGATG TCCACCATGG CAATGGAACA CAGGAGATAT TTGATGGGGA CAATTCTGTC 2280 TTGTACATAT CATTACATCG GCATGAGGAT GGAAGCTTCT ACCCTGGAAC TGGGGCAGCA 2340 CATGAGGTGG GAGTTATGGA TGGCCAAGGA TTCTCAGTCA ATATACCTTG GAGCCGTGGT 2400 GGTGTTGGAG ACAATGACTA CATATTTGCT TTTAAGCATG TGGTGCTTCC GATAGCTGCA 2460 GAATTTGCTC CAGACATCAC CATCATATCT GCAGGATTTG ATGCAGCAAG GGGTGACCCT 2520 CTGGGTTGTT GTGATGTCAC TCCTGCTGGA TATTCTAGGA TGGCGTCCAT GCTAACTGCT 2580 TGTTCACAGG GAAAATTGTT GGTTATACTT GAGGGAGGAT ACAATCTTCG GTCTATATCC 2640 TCATCAGCTA CTGAAGTTGT TAAGGTCCTA CTTGGGGATA GTCCTGTTTA TGATACAGAT 2700 GCAACTGAAC CATCAGAGGA GGGCATACAG ACTGTCTTAC AAGTCCTGAG TATCCAGCAG 2760 CAATTTTGGC CAGTTTTAGT TCCATCCTTT GCATCAGTTC TGGCACTGCA GCGGTCGGTT 2820 TTTTCCAGAT ATACCACTGA AGTAAACAAG ATGAAAAGGA AGCATGCAGG AGGGGCAGGA 2880 CCCTTCTGGT GGAAATGGGG GAGTAAAAGG CTACTGTACG AAGTGCTATT TGAGGGCCGC 2940 TGTCTGAGGA AAACCAAGGA TACAGGCAAA GAAAAATTGA ATGATGAAGC AGAGCCCTAA 3000
3001Nucleotide Fasta Sequence
>KN539089.1_FGP007|Class-I|Oryza longistaminata ATGAACAATCTCCTCACCGATTCGTTTGAGCTCCCTCGGGGAGGCTCTTCAAGAGATGGGGACATTGAAATGGGAATGCAAGCTGATCCTTCAGACAATCTAAAAGGTTTCTTGAAAAAGGTTGACGCAATTGAAAGCCTAATTGCTAAGCTGACGAATCTCTTGCATAAGCTTCAGACTGCAAATGAGGAATCCAAAGCGGTTACAAAAGCAAGGGACATGAAAGCAATTAAACAGAGGATGGAGAAAGATATTGATGAAGTGGGGAAAATCGCTCGCATGGCAAAGACAAAAGTTGATGAATTGGAAAAAGATAACTTATCAAACAGACAAAAGCCTGGATGCGGGAAAGGATCTGCGGTAGATCGATCAAGAGAACAGACTACTGGAGTGCATAAAGCCATGAATAGTTGTTCATCCACTATGCTTGCTAAATTCTACAGAGCAGTGAAAAAGAAATTGAAGGAGCGCATGGATGATTTTCAGGTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAGACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAAGCTATCCAACAGCAGGGAAGAGGCCAAATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACAACATAGAGACACATGTTTCAAATGCTACCAACCACATACAACAAGGCGTCAGTGCTCTACAGAACGCGAAGAAGCTCCAGAAGAACTCCAGGAAGTGGATGTGCTACGCCATCATCCTCCTGCTCATCATAGTGGTGATCATTGTCGTCGCCGTCATCCAGCCATGGAAGAAGGCTCACTCATCTGGTGATGCAGTATCGTCTTCGTCGTCGTCGACGTCCAGTGCCTTGAAATACTTGCCGTCCAACAGGGCTCCCTGTCGGAAGTCCAAATTCTTATCCACTCTTGTGTTTCCTATGCTGATCTTTGTCGTATCACAATTACAGATTGCGTTGCATGCTCTGATGGCGTCTGATATGAGGTCACTCAACAGCCAAAAGGGACAGAGTTGTGGAGTTTCAGACCAAGCTTGCCACAGCAAAAGCAAAAGCGGCAATGATGGAAAACCATCACATGCTAAAGCAAATGGAGTTTCCTCGTTGAGCGGGAGTCATAATGATGAGAAAATTTTGAAAGAGAACTCTGTAGCATGCAATTTAAATTCCGACCATGCCAATCCTTTATCAGTAGATGGGACCAAAGTTTCTACAGCAAGGTCGGAACTTATTGACAGTTCAGGTCATGATGGTTGTCTGCATGTCAAGAATGAAAGCTGTATGGCTTGTGATGATCTGCTTCAAGAGTCTGACAAAGAACAGCCTGGGGGTACACTGGAGGATCTATTTTCCTTTAATGATGAAGAGGATGATGACAGTGACTGGGAACCCTCTGCTCGCCTTGCTTTGAGCAGGTGGTTTTGCTTGAACTGTACAGTGCCAAACATGGAGGGGTTTACACATTGTCAGAATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAGCGCTGCCATCAGTATCTACAGCTGTCGGTTTTGATGAAAGAATGTTGCTCCATAGTGAGATAGAGATTAAACCAAATCCACATCCAGAAAGGCCTGACCGCCTTCGTGCAATCGCTGCCAGTCTTGCTGCTGCAGGTATCTTCCCTTCAAAATGTGTCATGGTACCTCCTCGAGAAATCACTAAGGAAGAACTCCTAAGGGTCCATACTTCAGATCACATTGACAGTGTTGAGCAGACAAAGAACATGCTTTACAGTTACTTCACTTCAGATACCTATGCAAATGGACACTCAGCATGTGCTGCCAAACTTGCAGCAGGGATATGTGCTGATCTTGCTAACTTGATAGTATCTGGGCGTGTTCACAATGGATTTGCAATGGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGTCTTCACAATAACGCAGCAGTGGCTGCATTAGCTGCACAAAGAGCTGGTGCCAAGAAAGTCTTAATAGTTGACTGGGATGTCCACCATGGCAATGGAACACAGGAGATATTTGATGGGGACAATTCTGTCTTGTACATATCATTACATCGGCATGAGGATGGAAGCTTCTACCCTGGAACTGGGGCAGCACATGAGGTGGGAGTTATGGATGGCCAAGGATTCTCAGTCAATATACCTTGGAGCCGTGGTGGTGTTGGAGACAATGACTACATATTTGCTTTTAAGCATGTGGTGCTTCCGATAGCTGCAGAATTTGCTCCAGACATCACCATCATATCTGCAGGATTTGATGCAGCAAGGGGTGACCCTCTGGGTTGTTGTGATGTCACTCCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGGATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAGGTCCTACTTGGGGATAGTCCTGTTTATGATACAGATGCAACTGAACCATCAGAGGAGGGCATACAGACTGTCTTACAAGTCCTGAGTATCCAGCAGCAATTTTGGCCAGTTTTAGTTCCATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATACCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTTCTGGTGGAAATGGGGGAGTAAAAGGCTACTGTACGAAGTGCTATTTGAGGGCCGCTGTCTGAGGAAAACCAAGGATACAGGCAAAGAAAAATTGAATGATGAAGCAGAGCCCTAA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |