Tag |
Content |
WERAM ID |
WERAM-Sei-0111 |
Ensembl Protein ID |
Si029194m |
Gene Name |
SETIT_029194mg |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
1.10e-111 |
374.1 |
211 |
520 |
HDAC |
Class-I |
3.70e-35 |
123 |
232 |
513 |
|
Organism |
Setaria italica |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsiylesks 98 +++ +de+ml h+ le + + hpE+p+R++ai +l++ag+ + k+ + r+ tkeel++vH+ +h+e +e+++++ + + ++y++ +s Si029194m 211 TAIGFDERMLLHSELEIKPNPHPERPDRLRAIAASLAAAGIFPsKCALVPPREITKEELLMVHTPDHIESVEQTKNMLYSYFT------SDTYANGHS 302 6789***********************************999758*****************************665555444......478****** PP class-2.txt 99 ikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylSlHRy 196 + aa+la+G + +l++ +++g+++ngfa+vRPPGHHa ++amGFCl+nn+avaa +++ +kk+livDwDvHhGnGtqeif d++vly+SlHR+ Si029194m 303 ACAAKLAAGLCADLASLIVSGRVHNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRA-GAKKVLIVDWDVHHGNGTQEIFDGDSSVLYISLHRH 399 ******************************************************9776655.56********************************** PP class-2.txt 197 dkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkqllklagg 294 + g+f+p g+ga+devg +g+gf+vN++w+ g++gd++y++af++vvlpia eF+Pd+ ++saGfDaa+gdplg ++vt+ +y+ +t l++ ++g Si029194m 400 EYGNFYP--GTGAADEVGILDGQGFSVNIPWSRGGVGDNDYIFAFQTVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPMGYSIMTSLLSDCSKG 495 *******..***************************************************************************************** PP class-2.txt 295 rvvlvlEGGynlkaiaeaveavvka 319 r++++lEGGynl++i++++++vvk+ Si029194m 496 RLLVILEGGYNLRSISSSATEVVKV 520 ********************99986 PP
HDAC Class-I
class-1.txt 20 hpmkpkrlslt.heLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGasleaakkL 116 hp +p rl+ + +L+ + k +v p++ ++eell +h+ ++ie +++ ++ + ++ + ++ g+ + + c+ + sl + ++ Si029194m 232 HPERPDRLRAIaASLAAAGIFPSKCALVPPREITKEELLMVHTPDHIESVEQTKNMLYSYFT--SDTYANGHSACAAKLAAGLCADLA--SLIVSGRV 325 88888888765156666666778899999999999999999999998888877766666655..566777777766666666666554..34444444 PP class-1.txt 117 nkkeadiainwaGGlhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyg.eeffPgtGdlsdvgaekg 212 ++ a+ G hha ++a Gfc n+ +a l ++ k+vl +d d+hhG+g +e f + v+ +s+h+++ +f+PgtG ++vg +g Si029194m 326 HNG---FAMVRPPG-HHAGVKQAMGFCLHNNAAVAALAAKRaGAKKVLIVDWDVHHGNGTQEIFDGDSSVLYISLHRHEyGNFYPGTGAADEVGILDG 419 443...34434444.999999***********9999999996799******************************9865224**************** PP class-1.txt 213 kyyavnvPl.kdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRc 304 + ++vn+P + g+ D+ y f++v+ ++ f P++ ++ G D+ gD+lg+ +++ g++ + +++ + + llv+ GGY+lr ++ Si029194m 420 QGFSVNIPWsRGGVGDNDYIFAFQTVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPMGYSIMTSLLSDCsKGRLLVILEGGYNLRSISSS 513 ********83568*********************************************************99967899***********99865 PP
|
Protein Sequence (Fasta) | MASDMKPLSD QKDEIPSRSV ENCGVSKQAC HGKSQSCDSD VKPFCAEVIG ISSLIGSHTD 60 GKASKENCGA CSFTYDHADA IVEDVKVAVA RSGHAESADH DGCQTAKNRS CMAVDDLPQE 120 FEREQAGATL EELFFSNDEE EDDSDWDPSS SLVVNRWFCL NCTMPNVDEI TNCLNCHELK 180 GSVVGGYDAF KTQIAQAALV SPDTELPPVS TAIGFDERML LHSELEIKPN PHPERPDRLR 240 AIAASLAAAG IFPSKCALVP PREITKEELL MVHTPDHIES VEQTKNMLYS YFTSDTYANG 300 HSACAAKLAA GLCADLASLI VSGRVHNGFA MVRPPGHHAG VKQAMGFCLH NNAAVAALAA 360 KRAGAKKVLI VDWDVHHGNG TQEIFDGDSS VLYISLHRHE YGNFYPGTGA ADEVGILDGQ 420 GFSVNIPWSR GGVGDNDYIF AFQTVVLPIA AEFAPDITII SAGFDAARGD PLGCCDVTPM 480 GYSIMTSLLS DCSKGRLLVI LEGGYNLRSI SSSATEVVKV CRTVMLGWKQ ALHSGFHFET 540 APSKEGLKTV LQVLKIQQQF WPVLGPTYAS LQEQQGSVFS KSTNKTNELR KRKHSGGSGP 600 FWWKFGSKRL LYRVLYEGRY LRKIKVSGEG KTIDSAEP 638Protein Fasta Sequence
>Si029194m|Class-I|Setaria italica MASDMKPLSDQKDEIPSRSVENCGVSKQACHGKSQSCDSDVKPFCAEVIGISSLIGSHTDGKASKENCGACSFTYDHADAIVEDVKVAVARSGHAESADHDGCQTAKNRSCMAVDDLPQEFEREQAGATLEELFFSNDEEEDDSDWDPSSSLVVNRWFCLNCTMPNVDEITNCLNCHELKGSVVGGYDAFKTQIAQAALVSPDTELPPVSTAIGFDERMLLHSELEIKPNPHPERPDRLRAIAASLAAAGIFPSKCALVPPREITKEELLMVHTPDHIESVEQTKNMLYSYFTSDTYANGHSACAAKLAAGLCADLASLIVSGRVHNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRAGAKKVLIVDWDVHHGNGTQEIFDGDSSVLYISLHRHEYGNFYPGTGAADEVGILDGQGFSVNIPWSRGGVGDNDYIFAFQTVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPMGYSIMTSLLSDCSKGRLLVILEGGYNLRSISSSATEVVKVCRTVMLGWKQALHSGFHFETAPSKEGLKTVLQVLKIQQQFWPVLGPTYASLQEQQGSVFSKSTNKTNELRKRKHSGGSGPFWWKFGSKRLLYRVLYEGRYLRKIKVSGEGKTIDSAEP
|
Nucleotide Sequence (Fasta) | GCCGTCTCCC CCCTTCGGTT TCTCTCCGCC AGGAGGCCGC CGGTTTCCGC CCGCGGAATT 60 CCCCGCGGCG CGCCGCCGGC CCGCCCCGTT CGTCCCCCCA CCGGATCCGA GCTCGCCATC 120 TCTTGGTCAC CCTCTGCGTT CGGTCGACCC CTGGCTGGGA TTGGGGTTCC CCCCGGGCAT 180 CCGTTGCTTT CCTCACTCTC GTTGATTTGA GCCTCACACT GGATATTTTC TTATGGCATC 240 TGATATGAAA CCGCTTAGCG ACCAAAAGGA TGAGATACCC TCCCGTTCCG TGGAGAACTG 300 TGGAGTTTCC AAACAAGCTT GTCATGGCAA ATCCCAAAGC TGTGACAGCG ATGTAAAACC 360 ATTTTGTGCT GAAGTCATTG GAATTTCCTC ATTGATTGGG AGTCATACTG ATGGGAAGGC 420 TTCAAAAGAG AACTGTGGGG CATGCAGTTT CACTTATGAT CATGCTGATG CGATAGTAGA 480 AGATGTCAAG GTTGCCGTGG CAAGGTCAGG TCATGCTGAG AGTGCTGATC ATGATGGCTG 540 TCAGACTGCC AAAAATAGAA GTTGCATGGC TGTTGATGAT CTGCCGCAGG AGTTTGAGAG 600 AGAGCAAGCT GGGGCTACAC TTGAGGAGCT GTTTTTCTCT AATGATGAAG AGGAAGATGA 660 CAGTGACTGG GACCCTTCCA GTAGCCTTGT TGTGAATAGG TGGTTTTGCT TGAACTGCAC 720 AATGCCAAAT GTGGACGAGA TTACTAATTG CCTGAATTGC CATGAGCTTA AGGGATCAGT 780 TGTAGGTGGA TACGATGCTT TTAAAACTCA GATTGCACAG GCTGCTTTGG TATCTCCTGA 840 CACAGAATTA CCACCGGTGT CTACAGCGAT TGGTTTTGAT GAAAGAATGC TGCTCCACAG 900 TGAGCTAGAA ATCAAACCAA ATCCACATCC AGAAAGACCG GACCGCCTTC GCGCAATTGC 960 TGCCAGTCTT GCTGCTGCAG GAATCTTTCC CTCAAAATGT GCTTTGGTAC CCCCTCGGGA 1020 AATTACCAAG GAGGAACTCC TAATGGTTCA TACTCCAGAC CACATTGAAA GTGTTGAGCA 1080 GACAAAAAAC ATGCTTTACA GTTACTTCAC TTCGGATACT TATGCGAATG GACACTCAGC 1140 ATGTGCCGCC AAACTTGCAG CAGGACTATG TGCTGATCTT GCTAGTTTGA TAGTATCTGG 1200 GCGTGTTCAC AATGGCTTTG CAATGGTGAG ACCTCCTGGG CATCATGCAG GGGTGAAGCA 1260 AGCAATGGGT TTTTGTCTTC ACAACAATGC AGCAGTGGCT GCATTAGCTG CAAAAAGAGC 1320 AGGTGCAAAG AAAGTCCTCA TAGTTGACTG GGATGTGCAC CATGGAAATG GCACACAAGA 1380 GATATTCGAC GGGGACAGCT CTGTATTGTA CATATCACTA CATCGTCATG AGTATGGAAA 1440 CTTCTATCCT GGAACTGGAG CAGCAGATGA GGTTGGAATT CTCGATGGTC AAGGTTTCTC 1500 GGTTAATATA CCTTGGAGCC GTGGTGGTGT TGGAGACAAC GACTACATCT TTGCTTTTCA 1560 GACCGTGGTG CTTCCAATAG CTGCAGAATT TGCCCCAGAC ATCACAATAA TATCTGCAGG 1620 ATTCGATGCA GCTAGAGGTG ACCCTCTTGG TTGTTGTGAT GTTACTCCGA TGGGATACTC 1680 TATAATGACA TCCTTGTTAT CTGATTGCTC AAAGGGAAGA TTGTTGGTGA TACTTGAGGG 1740 AGGATACAAT CTTCGGTCGA TATCTTCATC AGCTACTGAA GTTGTTAAGG TATGCAGGAC 1800 TGTAATGCTA GGATGGAAAC AGGCCTTGCA TTCAGGTTTT CATTTTGAAA CTGCACCATC 1860 AAAAGAGGGC TTGAAGACTG TTTTACAAGT CCTGAAGATT CAGCAACAAT TTTGGCCAGT 1920 TTTAGGTCCA ACCTATGCAT CACTGCAGGA ACAGCAGGGG TCGGTTTTTT CCAAATCTAC 1980 TAACAAAACT AATGAGCTGA GGAAAAGGAA GCATTCAGGA GGATCAGGGC CCTTCTGGTG 2040 GAAGTTTGGA AGCAAAAGGC TTCTGTACAG AGTGCTATAT GAGGGCCGCT ATCTGAGGAA 2100 GATCAAGGTC TCTGGAGAAG GAAAAACTAT TGATTCAGCA GAGCCTTAGA CGATGCCCTG 2160 ACTGTTGTTC TTCTAGACAT GAACAGCTTT GTCTGACTGG GGTTCCTAAA GCAGCGTAGC 2220 TTGTGCTTAC CTAGAGTCAA GTTTTGACTG GTTACTTGAA TTGTGGTCGA CCGGTGTAGA 2280 TGCAGAAAGC CAGCAACCCC ATTTAGTTGA CATGTGTTGT TGTTCCAGCC GATGTATCAT 2340 GCTACCCCTT TTCTTGGCTG CTTCGTACCA TACTAGATGT TAGCCTCAGC GTTAGCAACA 2400 TAGCCTGATT GGAGTCTGCA TTCCCGTTAG AGTTATTTAG AATGCCATTG ATGTATGTAG 2460 CAGATCGTCT ATGGGAAAAC CTTGAACATT TGGAATGGCA TCCGAGTCTT TAGCTTCTAT 2520 CATTGTGTAC CGAGTTTGCG GATTCTGTGT GTGGCTGACT CAATGTCTGA TGCACATTTG 2580 TTACTCTGGG ATCTACC
2598Nucleotide Fasta Sequence
>Si029194m|Class-I|Setaria italica GCCGTCTCCCCCCTTCGGTTTCTCTCCGCCAGGAGGCCGCCGGTTTCCGCCCGCGGAATTCCCCGCGGCGCGCCGCCGGCCCGCCCCGTTCGTCCCCCCACCGGATCCGAGCTCGCCATCTCTTGGTCACCCTCTGCGTTCGGTCGACCCCTGGCTGGGATTGGGGTTCCCCCCGGGCATCCGTTGCTTTCCTCACTCTCGTTGATTTGAGCCTCACACTGGATATTTTCTTATGGCATCTGATATGAAACCGCTTAGCGACCAAAAGGATGAGATACCCTCCCGTTCCGTGGAGAACTGTGGAGTTTCCAAACAAGCTTGTCATGGCAAATCCCAAAGCTGTGACAGCGATGTAAAACCATTTTGTGCTGAAGTCATTGGAATTTCCTCATTGATTGGGAGTCATACTGATGGGAAGGCTTCAAAAGAGAACTGTGGGGCATGCAGTTTCACTTATGATCATGCTGATGCGATAGTAGAAGATGTCAAGGTTGCCGTGGCAAGGTCAGGTCATGCTGAGAGTGCTGATCATGATGGCTGTCAGACTGCCAAAAATAGAAGTTGCATGGCTGTTGATGATCTGCCGCAGGAGTTTGAGAGAGAGCAAGCTGGGGCTACACTTGAGGAGCTGTTTTTCTCTAATGATGAAGAGGAAGATGACAGTGACTGGGACCCTTCCAGTAGCCTTGTTGTGAATAGGTGGTTTTGCTTGAACTGCACAATGCCAAATGTGGACGAGATTACTAATTGCCTGAATTGCCATGAGCTTAAGGGATCAGTTGTAGGTGGATACGATGCTTTTAAAACTCAGATTGCACAGGCTGCTTTGGTATCTCCTGACACAGAATTACCACCGGTGTCTACAGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAGCTAGAAATCAAACCAAATCCACATCCAGAAAGACCGGACCGCCTTCGCGCAATTGCTGCCAGTCTTGCTGCTGCAGGAATCTTTCCCTCAAAATGTGCTTTGGTACCCCCTCGGGAAATTACCAAGGAGGAACTCCTAATGGTTCATACTCCAGACCACATTGAAAGTGTTGAGCAGACAAAAAACATGCTTTACAGTTACTTCACTTCGGATACTTATGCGAATGGACACTCAGCATGTGCCGCCAAACTTGCAGCAGGACTATGTGCTGATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCACAATGGCTTTGCAATGGTGAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGTTTTTGTCTTCACAACAATGCAGCAGTGGCTGCATTAGCTGCAAAAAGAGCAGGTGCAAAGAAAGTCCTCATAGTTGACTGGGATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAGCTCTGTATTGTACATATCACTACATCGTCATGAGTATGGAAACTTCTATCCTGGAACTGGAGCAGCAGATGAGGTTGGAATTCTCGATGGTCAAGGTTTCTCGGTTAATATACCTTGGAGCCGTGGTGGTGTTGGAGACAACGACTACATCTTTGCTTTTCAGACCGTGGTGCTTCCAATAGCTGCAGAATTTGCCCCAGACATCACAATAATATCTGCAGGATTCGATGCAGCTAGAGGTGACCCTCTTGGTTGTTGTGATGTTACTCCGATGGGATACTCTATAATGACATCCTTGTTATCTGATTGCTCAAAGGGAAGATTGTTGGTGATACTTGAGGGAGGATACAATCTTCGGTCGATATCTTCATCAGCTACTGAAGTTGTTAAGGTATGCAGGACTGTAATGCTAGGATGGAAACAGGCCTTGCATTCAGGTTTTCATTTTGAAACTGCACCATCAAAAGAGGGCTTGAAGACTGTTTTACAAGTCCTGAAGATTCAGCAACAATTTTGGCCAGTTTTAGGTCCAACCTATGCATCACTGCAGGAACAGCAGGGGTCGGTTTTTTCCAAATCTACTAACAAAACTAATGAGCTGAGGAAAAGGAAGCATTCAGGAGGATCAGGGCCCTTCTGGTGGAAGTTTGGAAGCAAAAGGCTTCTGTACAGAGTGCTATATGAGGGCCGCTATCTGAGGAAGATCAAGGTCTCTGGAGAAGGAAAAACTATTGATTCAGCAGAGCCTTAGACGATGCCCTGACTGTTGTTCTTCTAGACATGAACAGCTTTGTCTGACTGGGGTTCCTAAAGCAGCGTAGCTTGTGCTTACCTAGAGTCAAGTTTTGACTGGTTACTTGAATTGTGGTCGACCGGTGTAGATGCAGAAAGCCAGCAACCCCATTTAGTTGACATGTGTTGTTGTTCCAGCCGATGTATCATGCTACCCCTTTTCTTGGCTGCTTCGTACCATACTAGATGTTAGCCTCAGCGTTAGCAACATAGCCTGATTGGAGTCTGCATTCCCGTTAGAGTTATTTAGAATGCCATTGATGTATGTAGCAGATCGTCTATGGGAAAACCTTGAACATTTGGAATGGCATCCGAGTCTTTAGCTTCTATCATTGTGTACCGAGTTTGCGGATTCTGTGTGTGGCTGACTCAATGTCTGATGCACATTTGTTACTCTGGGATCTACC
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |