WERAM Information


Tag Content
WERAM ID WERAM-Brr-0115
Ensembl Protein ID Bra022329.1-P
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra022329 Bra022329.1 Bra022329.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 3.20e-117 392.3 147 459
HDAC Class-I 9.90e-35 121.6 273 453
Organism Brassica rapa
Domain Profile
  HDAC Class-II

    class-2.txt   2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsiyles 96 
+++ +de+ml h+ e + + hpE+p+R++ai +l++ag+ + +++ ++ar+ tk+elq+vH++e+v+ ++ +++l + + ++y+++
Bra022329.1-P 147 TAVGFDERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPgRCLPIHAREITKQELQMVHTSELVDAVNITSQLLYSYFT------TDTYANE 236
6799***********************************998769***************************99655554444......478**** PP
class-2.txt 97 ksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylS 192
s++aarla+G + +l++++ +g++kngfa+vRPPGHHa ++amGFCl+nn+avaa ++q + +k+livDwDvHhGnGtqeif+++++vly+S
Bra022329.1-P 237 YSARAARLAAGLCADLATEIYSGRVKNGFALVRPPGHHAGIKHAMGFCLHNNAAVAALVAQAAGA-RKVLIVDWDVHHGNGTQEIFEQNKSVLYIS 331
*********************************************************99887766.****************************** PP
class-2.txt 193 lHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkql 288
lHR++ g+f+p g+ga+devg++ +eg+ vNv+w++g++gd++y++af++vvlpia+ F+Pd+v+vsaGfDaa+gdplg ++vt+++y+++t++l
Bra022329.1-P 332 LHRHEGGNFYP--GTGAADEVGTNGAEGYCVNVPWSCGGVGDKDYIYAFQHVVLPIASAFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQML 425
***********..*********************************************************************************** PP
class-2.txt 289 lklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
+++gg+++++lEGGynl++i+++++av+k+Llg
Bra022329.1-P 426 GDICGGKMLVILEGGYNLRSISSSATAVIKVLLG 459
********************************96 PP

  HDAC Class-I

    class-1.txt 132 hhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlk.dg 224
hha ++a Gfc n+ +a l + ++vl +d d+hhG+g +e f++ + v+ +s+h+++ +f+PgtG ++vg++ y+vnvP + g
Bra022329.1-P 273 HHAGIKHAMGFCLHNNAAVAALVAQAaGARKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGgNFYPGTGAADEVGTNGAEGYCVNVPWScGG 368
9************999888777666548899*******************************97527************************98368 PP
class-1.txt 225 idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRcwtye 308
+ D+ y f++v+ ++ +af+P+ v++ G D+ gD+lg+ +++ g++++ +++ + ++lv+ GGY+lr ++ t
Bra022329.1-P 369 VGDKDYIYAFQHVVLPIASAFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQMLGDIcGGKMLVILEGGYNLRSISSSATAV 453
*********************************************************9987999************999776655 PP

Protein Sequence
(Fasta)
MVVETLDSSC DGSKRKHANG GEETHLDELS NGDNGVSSTK RARVSRGEMT FQDIYDADAL 60
LNEEDEEDDS DWEPLQQQMM PVEFVKWGCV NCTMSNPGDM VHCHICGEHK ESGILRHGYL 120
ASPFFKDTGL AEVEEKCGGS SSATSSTAVG FDERMLLHSE FEVKAQPHPE RPDRLRAIAA 180
SLATAGVFPG RCLPIHAREI TKQELQMVHT SELVDAVNIT SQLLYSYFTT DTYANEYSAR 240
AARLAAGLCA DLATEIYSGR VKNGFALVRP PGHHAGIKHA MGFCLHNNAA VAALVAQAAG 300
ARKVLIVDWD VHHGNGTQEI FEQNKSVLYI SLHRHEGGNF YPGTGAADEV GTNGAEGYCV 360
NVPWSCGGVG DKDYIYAFQH VVLPIASAFS PDFVIVSAGF DAARGDPLGC CDVTPAGYSR 420
MTQMLGDICG GKMLVILEGG YNLRSISSSA TAVIKVLLGE NSENDDLPIA TTPSKAGLET 480
VIEVMNIQMK FWPSLATAYS KLLSEWETRL IENKKNQVKR KLVRVPTWWK WGRKKFMYRC 540
LDSVEYFFSF KWQKELYYGA RAAPLDYLSI
Nucleotide Sequence
(Fasta)
ATGGTTGTAG AAACTCTCGA CAGTTCCTGT GACGGTTCAA AGAGAAAACA TGCCAACGGT 60
GGTGAAGAAA CTCACCTCGA TGAGCTTAGC AATGGAGACA ATGGGGTTTC ATCAACCAAA 120
AGAGCTAGGG TTTCAAGAGG AGAGATGACG TTTCAGGATA TCTACGATGC AGATGCATTG 180
CTGAATGAAG AAGATGAGGA GGATGATAGT GATTGGGAGC CTTTGCAGCA GCAGATGATG 240
CCCGTTGAGT TTGTGAAATG GGGTTGCGTC AATTGCACTA TGTCGAATCC TGGTGATATG 300
GTCCATTGTC ATATATGTGG TGAGCACAAG GAATCTGGCA TCCTGAGGCA TGGATACTTA 360
GCATCTCCGT TTTTCAAAGA CACTGGTCTC GCCGAAGTCG AAGAGAAATG TGGAGGAAGC 420
TCATCTGCAA CTAGCTCAAC AGCTGTTGGT TTCGACGAGA GAATGTTGCT ACACTCTGAA 480
TTCGAAGTGA AGGCACAACC ACATCCCGAG AGACCTGATC GTCTTCGAGC TATAGCTGCT 540
AGTCTTGCCA CAGCTGGCGT CTTTCCTGGA AGATGCTTGC CTATTCATGC AAGGGAGATC 600
ACGAAACAAG AGCTCCAGAT GGTCCACACT TCAGAGCTTG TTGACGCTGT TAATATCACA 660
AGCCAGCTTC TCTACAGCTA CTTCACCACT GATACATATG CTAATGAGTA TTCAGCACGT 720
GCTGCTAGAC TTGCAGCTGG TTTATGCGCT GACCTTGCTA CAGAAATTTA CTCTGGCCGT 780
GTTAAAAATG GATTCGCTTT GGTGAGACCT CCTGGTCACC ATGCTGGCAT CAAACATGCT 840
ATGGGGTTTT GCCTTCACAA TAATGCAGCT GTTGCTGCAT TAGTAGCTCA GGCAGCAGGG 900
GCAAGGAAGG TGCTGATTGT GGACTGGGAT GTCCATCATG GAAATGGAAC CCAAGAGATA 960
TTCGAGCAAA ACAAATCTGT ATTGTACATT TCCTTGCACA GGCATGAAGG GGGAAACTTT 1020
TATCCTGGTA CTGGAGCTGC TGATGAGGTT GGTACAAATG GTGCTGAAGG TTATTGTGTA 1080
AATGTTCCAT GGAGTTGTGG TGGAGTTGGT GATAAAGACT ACATCTATGC CTTTCAGCAT 1140
GTGGTTCTAC CCATAGCTTC TGCATTTTCT CCAGATTTCG TCATCGTATC AGCTGGGTTT 1200
GATGCGGCTA GAGGAGACCC ATTAGGATGC TGTGATGTAA CTCCAGCTGG TTATTCTAGA 1260
ATGACACAGA TGTTGGGTGA TATCTGCGGT GGGAAAATGC TTGTTATTCT CGAGGGCGGC 1320
TACAATCTTC GCTCCATCTC TTCTTCTGCT ACAGCAGTGA TCAAGGTGCT TCTGGGTGAA 1380
AATTCTGAGA ACGATGACTT GCCTATAGCT ACCACGCCTT CAAAAGCCGG CTTGGAAACT 1440
GTTATTGAAG TAATGAATAT CCAAATGAAG TTCTGGCCAT CACTTGCTAC CGCCTACTCC 1500
AAATTACTCT CAGAGTGGGA AACACGTCTG ATCGAAAACA AAAAGAACCA GGTGAAAAGG 1560
AAGCTGGTTC GGGTTCCCAC TTGGTGGAAA TGGGGAAGGA AGAAGTTTAT GTACAGATGT 1620
CTCGATTCTG TTGAGTATTT CTTTAGCTTT AAGTGGCAGA AAGAATTGTA TTATGGAGCT 1680
CGTGCTGCTC CTTTGGATTA TCTGAGTATC TAA 1714
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bro-0099 Bo5g118460.1 Brassica oleracea 96 0.0 951
WERAM-Arl-0060 fgenesh2_kg.3__ 2057__ AT3G18520.1 Arabidopsis lyrata 86 0.0 850
WERAM-Art-0072 AT3G18520.1 Arabidopsis thaliana 85 0.0 841
WERAM-Thc-0030 EOY20940 Theobroma cacao 63 0.0 644
WERAM-Viv-0105 VIT_17s0000g04120.t01 Vitis vinifera 71 5e-179 624
WERAM-Pot-0130 POPTR_0012s05730.1 Populus trichocarpa 67 1e-177 620
WERAM-Prp-0050 EMJ11455 Prunus persica 65 5e-173 605
WERAM-Sot-0015 PGSC0003DMT400014582 Solanum tuberosum 62 8e-173 604
WERAM-Sol-0057 Solyc03g119730.2.1 Solanum lycopersicum 62 4e-171 598
WERAM-Met-0113 KEH32089 Medicago truncatula 64 5e-168 588
WERAM-Glm-0224 GLYMA17G13000.1 Glycine max 62 8e-161 564
WERAM-Amt-0097 ERN15947 Amborella trichopoda 66 4e-160 562
WERAM-Mua-0121 GSMUA_Achr8P20260_001 Musa acuminata 63 1e-156 550
WERAM-Org-0071 ORGLA07G0034700.1 Oryza glaberrima 62 2e-145 513
WERAM-Orb-0071 OBART07G04070.1 Oryza barthii 62 5e-145 511
WERAM-Tra-0242 Traes_5DS_18DC37E47.1 Triticum aestivum 63 3e-143 506
WERAM-Orp-0068 OPUNC07G03920.1 Oryza punctata 63 4e-143 505
WERAM-Orbr-0079 OB07G13070.1 Oryza brachyantha 60 1e-142 504
WERAM-Orni-0070 ONIVA07G02650.1 Oryza nivara 62 4e-142 502
WERAM-Orr-0073 ORUFI07G03770.1 Oryza rufipogon 62 1e-141 501
WERAM-Orl-0056 KN539089.1_FGP007 Oryza longistaminata 62 2e-141 500
WERAM-Sem-0039 EFJ31239 Selaginella moellendorffii 59 4e-141 499
WERAM-Lep-0070 LPERR07G03600.1 Leersia perrieri 58 9e-141 498
WERAM-Ors-0064 OS07T0164100-01 Oryza sativa 62 1e-140 497
WERAM-Ori-0081 BGIOSGA024767-PA Oryza indica 62 1e-140 497
WERAM-Orgl-0069 OGLUM07G03480.1 Oryza glumaepatula 62 2e-140 496
WERAM-Sei-0111 Si029194m Setaria italica 59 2e-137 486
WERAM-Zem-0064 GRMZM2G107309_P01 Zea mays 60 9e-135 478
WERAM-Hov-0036 MLOC_37038.1 Hordeum vulgare 67 8e-134 474
WERAM-Sob-0016 Sb02g003690.1 Sorghum bicolor 60 8e-134 474
WERAM-Tru-0033 TRIUR3_17245-P1 Triticum urartu 55 7e-132 468
WERAM-Aet-0038 EMT15178 Aegilops tauschii 66 3e-130 462
WERAM-Php-0023 PP1S145_70V6.1 Physcomitrella patens 53 1e-123 441
WERAM-Brd-0030 BRADI1G56740.2 Brachypodium distachyon 68 4e-93 339
WERAM-Kop-0012 CAY68916 Komagataella pastoris 42 2e-74 277
WERAM-Caa-0034 KGT64501 Candida albicans 44 6e-73 272
WERAM-Orm-0067 OMERI07G02600.4 Oryza meridionalis 54 2e-72 271
WERAM-Usm-0012 UM02102P0 Ustilago maydis 39 6e-72 269
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 45 1e-71 268
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 43 2e-71 267
WERAM-Coi-0028 EAS30926 Coccidioides immitis 45 3e-71 266
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 44 6e-71 266
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 43 6e-71 266
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 42 6e-71 266
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 42 2e-70 264
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 45 3e-70 263
WERAM-Scp-0036 SPBC800.03.1:pep Schizosaccharomyces pombe 44 4e-70 263
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 43 5e-70 263
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 45 5e-70 263
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 43 6e-70 262
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 40 9e-70 261
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 45 1e-69 261
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 44 3e-69 260
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 44 3e-69 260
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 45 4e-69 259
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 47 1e-68 258
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 44 1e-68 258
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 43 2e-68 257
WERAM-Ran-0201 ENSRNOP00000063689.2 Rattus norvegicus 43 2e-68 257
WERAM-Asg-0010 AAS51704 Ashbya gossypii 43 3e-68 256
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 41 4e-68 256
WERAM-Pug-0031 EFP89333 Puccinia graminis 45 7e-68 255
WERAM-Sah-0012 ENSSHAP00000001165.1 Sarcophilus harrisii 45 1e-67 254
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 43 3e-67 253
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 43 3e-67 253
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 43 3e-67 253
WERAM-Cag-0018 CAG60803 Candida glabrata 41 3e-67 253
WERAM-Sac-0037 YNL021W Saccharomyces cerevisiae 41 4e-67 253
WERAM-Aso-0015 CADAORAP00001816 Aspergillus oryzae 43 5e-67 253
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 44 5e-67 253
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 40 6e-67 252
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 40 6e-67 252
WERAM-Zyt-0016 Mycgr3P37223 Zymoseptoria tritici 42 9e-67 252
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 41 2e-66 251
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 43 3e-66 250
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 44 4e-66 249
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 43 5e-66 249
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 43 1e-65 248
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 43 1e-65 248
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 41 2e-65 248
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 42 4e-65 246
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 41 4e-65 246
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 42 1e-64 244
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 40 2e-64 244
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 42 3e-64 243
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 43 3e-64 243
WERAM-Put-0014 PTTG_07163P0 Puccinia triticina 42 1e-63 241
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 43 1e-63 241
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 39 2e-63 240
WERAM-Orla-0013 ENSORLP00000001341.1 Oryzias latipes 40 3e-63 240
WERAM-Ved-0005 EGY17208 Verticillium dahliae 39 3e-63 240
WERAM-Mao-0002 MGG_01076T0 Magnaporthe oryzae 39 4e-63 239
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 39 7e-63 239
WERAM-Gaga-0067 ENSGALP00000010190.4 Gallus gallus 43 9e-63 238
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 42 1e-62 238
WERAM-Meg-0108 ENSMGAP00000010913.2 Meleagris gallopavo 43 2e-62 238
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 42 2e-62 237
WERAM-Fuo-0035 FOXG_13914P0 Fusarium oxysporum 37 5e-62 236
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 42 6e-62 236
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 40 6e-62 236
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 42 6e-62 236
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 42 7e-62 236
WERAM-Trv-0041 EHK18675 Trichoderma virens 39 9e-62 235
WERAM-Tag-0054 ENSTGUP00000003859.1 Taeniopygia guttata 42 9e-62 235
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 39 2e-61 234
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 41 3e-61 233
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 42 3e-61 233
WERAM-Pes-0124 ENSPSIP00000014863.1 Pelodiscus sinensis 42 3e-61 233
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 41 3e-61 233
WERAM-Anp-0061 ENSAPLP00000006782.1 Anas platyrhynchos 42 3e-61 233
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 41 4e-61 233
WERAM-Chg-0033 EAQ86725 Chaetomium globosum 39 4e-61 233
WERAM-Leo-0130 ENSLOCP00000016135.1 Lepisosteus oculatus 42 6e-61 232
WERAM-Gaa-0053 ENSGACP00000006953.1 Gasterosteus aculeatus 40 7e-61 232
WERAM-Phn-0010 SNOT_01279 Phaeosphaeria nodorum 50 8e-61 232
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 41 1e-60 231
WERAM-Nec-0012 EFNCRP00000001681 Neurospora crassa 41 1e-60 231
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 39 2e-60 231
WERAM-Trr-0039 EGR46026 Trichoderma reesei 38 2e-60 230
WERAM-Osl-0043 ABO96923 Ostreococcus lucimarinus 41 3e-60 230
WERAM-Asfu-0010 CADAFUAP00002902 Aspergillus fumigatus 39 4e-60 229
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 41 5e-60 229
WERAM-Gag-0014 GGTG_04308T0 Gaeumannomyces graminis 39 5e-60 229
WERAM-Nol-0078 ENSNLEP00000009627.2 Nomascus leucogenys 41 5e-60 229
WERAM-Poa-0196 ENSPPYP00000022747.2 Pongo abelii 41 6e-60 229
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 41 7e-60 229
WERAM-Tut-0056 ENSTTRP00000004443.1 Tursiops truncatus 41 1e-59 228
WERAM-Pat-0040 ENSPTRP00000008320.5 Pan troglodytes 41 4e-59 226
WERAM-Tas-0021 ENSTSYP00000002661.1 Tarsius syrichta 39 4e-59 226
WERAM-Map-0033 MAPG_10880T0 Magnaporthe poae 39 1e-58 225
Created Date 25-Jun-2016