Tag |
Content |
WERAM ID |
WERAM-Sob-0016 |
Ensembl Protein ID |
Sb02g003690.1 |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
5.40e-111 |
371.7 |
210 |
522 |
HDAC |
Class-I |
5.90e-34 |
118.9 |
66 |
515 |
|
Organism |
Sorghum bicolor |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsiyles 96 +++ +de+ml h+ le + + hpE+p+R++ai +l++ag+ + k+ + r+ tkeel++vHs +h+e +e+++++ + + ++y++ Sb02g003690.1 210 TAIGFDERMLLHSELEVKPNPHPERPDRLRAIAASLAAAGIFPsKCALVPPREITKEELLMVHSPDHIESVEQTKNMLYSYFT------SDTYANG 299 6789***********************************999758*****************************665555444......478**** PP class-2.txt 97 ksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylS 192 +s+ aa+la+G + +l++ +++g+++ngfa+vRPPGHHa ++amGFCl+nn+avaa +++ +kk+livDwDvHhGnGtqeif+ d+ vly+S Sb02g003690.1 300 HSACAAKLAAGLCADLASLMVSGRVRNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRA-GAKKVLIVDWDVHHGNGTQEIFEGDKTVLYIS 394 ********************************************************9776655.56****************************** PP class-2.txt 193 lHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkql 288 lHR+++g+f+p g+ga++evg +g+gf+vN++w+ g++gd++y++af++vvlpia eF+ d+ ++saGfDaa+gdplgg++vt+ +y+ +t l Sb02g003690.1 395 LHRHEDGNFYP--GTGAAHEVGVLDGQGFSVNIPWSRGGVGDNDYIFAFQTVVLPIAAEFAADITIISAGFDAARGDPLGGCDVTPVGYSWMTSLL 488 ***********..*********************************************************************************** PP class-2.txt 289 lklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 + ++gr++++lEGGynl++i++++++vvk+Llg Sb02g003690.1 489 ADCSNGRLLVILEGGYNLQSISSSATEVVKVLLG 522 ********************************96 PP
HDAC Class-I
class-1.txt 253 qcGaDslagDrlgefnlsikghaecvk 279 +cGa sl++Dr + + +kg + + Sb02g003690.1 66 NCGACSLNNDRADSLEEEVKGSTARIG 92 6**********9999999998876665 PP class-1.txt 19 khpmkpkrlslt.heLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGasleaa 113 hp +p rl+ + +L+ + k +v p++ ++eell +hs ++ie +++ ++ + ++ + ++ g+ + + c+ + sl + Sb02g003690.1 230 PHPERPDRLRAIaASLAAAGIFPSKCALVPPREITKEELLMVHSPDHIESVEQTKNMLYSYFT--SDTYANGHSACAAKLAAGLCADLA--SLMVS 321 588899999865156667777788999999999999999999999999988887766666665..567888887777776677776654..45555 PP class-1.txt 114 kkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdv 207 ++ ++ a+ G hha ++a Gfc n+ +a l ++ k+vl +d d+hhG+g +e f+ + v+ +s+h++++ +f+PgtG ++v Sb02g003690.1 322 GRVRNGF---ALVRPPG-HHAGVKQAMGFCLHNNAAVAALAAKRaGAKKVLIVDWDVHHGNGTQEIFEGDKTVLYISLHRHEDgNFYPGTGAAHEV 413 5555544...4444444.999999***********9999999996799*********************************984699********* PP class-1.txt 208 gaekgkyyavnvPl.kdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpllvlGGGGYtlrnv 301 g+ +g+ ++vn+P + g+ D+ y f++v+ ++ f ++ ++ G D+ gD+lg +++ g++ + +++ + n llv+ GGY+l+ + Sb02g003690.1 414 GVLDGQGFSVNIPWsRGGVGDNDYIFAFQTVVLPIAAEFAADITIISAGFDAARGDPLGGCDVTPVGYSWMTSLLADCsNGRLLVILEGGYNLQSI 509 *************83568*********************************************************9997999************99 PP class-1.txt 302 aRcwty 307 + t Sb02g003690.1 510 SSSATE 515 876665 PP
|
Protein Sequence (Fasta) | MASDMRAPSS GKKSETSHGM KCGVSDQACH GKCQSCDIAA KPICSGVDGV SSLTGSHTDV 60 KASKENCGAC SLNNDRADSL EEEVKGSTAR IGHVESADPD GCVDVKKESF MAVDDLPQEF 120 EGEQVGATLE DLFFFNGEEE DDSDWEPASR LVEDRWFCFN CTMPIVDQIT HCMNCRELKE 180 SAVDGYDVFK KQIAQTALLS ADTELLPVST AIGFDERMLL HSELEVKPNP HPERPDRLRA 240 IAASLAAAGI FPSKCALVPP REITKEELLM VHSPDHIESV EQTKNMLYSY FTSDTYANGH 300 SACAAKLAAG LCADLASLMV SGRVRNGFAL VRPPGHHAGV KQAMGFCLHN NAAVAALAAK 360 RAGAKKVLIV DWDVHHGNGT QEIFEGDKTV LYISLHRHED GNFYPGTGAA HEVGVLDGQG 420 FSVNIPWSRG GVGDNDYIFA FQTVVLPIAA EFAADITIIS AGFDAARGDP LGGCDVTPVG 480 YSWMTSLLAD CSNGRLLVIL EGGYNLQSIS SSATEVVKVL LGDGPNRASF VGSPSREALK 540 TVSQVLKIQQ RFWPVLGPTY ASLQAQQGSV SSNHITKRNE LKKRKHSGGL GPFWWKLGSK 600 RLLYEALFEH RRQRKIKGSG EGKATGFSST LDG 633Protein Fasta Sequence
>Sb02g003690.1|Class-I|Sorghum bicolor MASDMRAPSSGKKSETSHGMKCGVSDQACHGKCQSCDIAAKPICSGVDGVSSLTGSHTDVKASKENCGACSLNNDRADSLEEEVKGSTARIGHVESADPDGCVDVKKESFMAVDDLPQEFEGEQVGATLEDLFFFNGEEEDDSDWEPASRLVEDRWFCFNCTMPIVDQITHCMNCRELKESAVDGYDVFKKQIAQTALLSADTELLPVSTAIGFDERMLLHSELEVKPNPHPERPDRLRAIAASLAAAGIFPSKCALVPPREITKEELLMVHSPDHIESVEQTKNMLYSYFTSDTYANGHSACAAKLAAGLCADLASLMVSGRVRNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRAGAKKVLIVDWDVHHGNGTQEIFEGDKTVLYISLHRHEDGNFYPGTGAAHEVGVLDGQGFSVNIPWSRGGVGDNDYIFAFQTVVLPIAAEFAADITIISAGFDAARGDPLGGCDVTPVGYSWMTSLLADCSNGRLLVILEGGYNLQSISSSATEVVKVLLGDGPNRASFVGSPSREALKTVSQVLKIQQRFWPVLGPTYASLQAQQGSVSSNHITKRNELKKRKHSGGLGPFWWKLGSKRLLYEALFEHRRQRKIKGSGEGKATGFSSTLDG
|
Nucleotide Sequence (Fasta) | ATGGCATCTG ATATGAGAGC ACCTAGCAGT GGCAAAAAGA GTGAGACCTC CCATGGCATG 60 AAGTGTGGGG TCTCTGATCA AGCTTGTCAT GGCAAATGCC AAAGCTGTGA CATTGCTGCA 120 AAACCTATTT GTTCTGGAGT GGATGGAGTC TCCTCGTTGA CTGGTAGTCA TACTGATGTG 180 AAGGCCTCAA AAGAGAACTG TGGAGCATGC AGTCTGAACA ATGATCGTGC TGATTCTTTA 240 GAAGAAGAGG TAAAGGGTTC CACAGCGAGG ATAGGTCATG TTGAGAGTGC TGATCCTGAT 300 GGCTGTGTGG ATGTAAAAAA GGAAAGTTTC ATGGCTGTTG ATGATCTACC ACAGGAGTTT 360 GAGGGGGAGC AAGTTGGGGC AACACTGGAG GATCTGTTTT TCTTTAATGG TGAAGAGGAA 420 GATGACAGTG ATTGGGAACC TGCTAGTCGC CTTGTTGAGG ATAGATGGTT TTGCTTTAAC 480 TGCACAATGC CGATTGTGGA CCAGATTACA CATTGCATGA ATTGCCGTGA GCTTAAGGAA 540 TCTGCAGTAG ATGGATATGA TGTTTTCAAA AAACAAATTG CACAGACAGC TTTGTTATCT 600 GCCGACACAG AGTTGCTGCC AGTATCTACA GCGATTGGTT TTGATGAAAG AATGCTGCTC 660 CACAGTGAGC TAGAAGTTAA ACCAAATCCG CATCCAGAAA GACCGGATCG CCTTCGCGCC 720 ATTGCTGCAA GTCTTGCTGC TGCAGGGATC TTTCCCTCAA AATGTGCTTT GGTACCTCCT 780 CGAGAAATCA CGAAGGAGGA ACTCCTTATG GTTCATAGTC CAGACCACAT TGAAAGTGTC 840 GAGCAGACAA AGAACATGCT TTACAGTTAC TTCACTTCGG ATACTTATGC AAATGGACAT 900 TCAGCATGTG CTGCCAAACT TGCAGCTGGA TTATGTGCTG ATCTTGCTAG TTTGATGGTA 960 TCTGGGCGTG TTCGTAATGG TTTTGCTCTG GTAAGACCTC CTGGGCATCA TGCAGGGGTG 1020 AAGCAAGCAA TGGGTTTTTG TCTTCACAAC AATGCAGCAG TGGCTGCTTT AGCTGCAAAA 1080 AGAGCAGGTG CCAAGAAAGT CCTCATAGTT GACTGGGATG TGCACCATGG AAATGGCACA 1140 CAAGAGATAT TCGAAGGGGA TAAAACAGTC TTGTACATAT CATTACATCG TCATGAGGAT 1200 GGAAACTTTT ACCCTGGAAC TGGAGCAGCT CATGAGGTGG GAGTTCTGGA TGGTCAAGGA 1260 TTCTCAGTTA ATATACCTTG GAGCCGTGGT GGTGTTGGAG ACAATGACTA CATCTTTGCT 1320 TTTCAGACTG TGGTGCTTCC AATAGCTGCA GAGTTTGCCG CAGACATCAC TATAATATCT 1380 GCAGGATTCG ATGCAGCTAG AGGTGACCCT CTAGGTGGTT GTGATGTCAC TCCAGTTGGA 1440 TACTCTTGGA TGACATCCCT GCTAGCTGAT TGCTCAAATG GAAGATTGTT GGTGATACTT 1500 GAGGGAGGAT ACAATCTCCA GTCGATATCC TCATCAGCTA CTGAAGTTGT TAAGGTCCTA 1560 CTTGGGGATG GTCCAAATCG TGCTTCATTT GTAGGTTCAC CATCAAGAGA GGCCTTGAAG 1620 ACTGTTTCTC AAGTCCTGAA GATTCAACAA CGATTTTGGC CAGTTTTAGG TCCAACATAT 1680 GCATCACTAC AGGCACAGCA GGGGTCGGTT TCTTCCAATC ATATCACCAA ACGTAATGAG 1740 CTGAAGAAAA GGAAGCATTC AGGAGGATTA GGGCCCTTCT GGTGGAAGTT GGGAAGCAAA 1800 AGGCTTCTGT ACGAAGCGCT TTTTGAGCAC CGTCGTCAGA GGAAAATCAA GGGGTCCGGA 1860 GAAGGAAAAG CAACTGGTTT CAGCAGTACC TTAGATGGGT AGTTCGCTGA CTGTTGATCT 1920 TCTAGGCATG AACAGGGTAG TTCGCTGACT GGGTTTCCTA AAGCAGAGTA GCTTGCGTTT 1980 ACCTAGAGCC TAGTTTTGAC TGGTTACTTG GTCTGCCGTT TCAGATGAAG TTTGACAGCA 2040 ACCCGTTGTG TTAACATGCG TGGTGTATCA ACCGAAGTTT CATGTTACCA TCTTTTTCTT 2100 TGGTTGGTTC GTACCATAGA TGTATGTACT GGTCATCGAT AGAAAAACCT TGCTGATCTG 2160 GAATGGCATG CGTCTCAGTT ATTAAACCCT GTTATTGCAT ATGGATTTTT GCGATTTTCT 2220 GCATGATTGA CTGCGACGTC TGATGTGCAT TTGTTACTCA ACTGATTCAC CGTC
2275Nucleotide Fasta Sequence
>Sb02g003690.1|Class-I|Sorghum bicolor ATGGCATCTGATATGAGAGCACCTAGCAGTGGCAAAAAGAGTGAGACCTCCCATGGCATGAAGTGTGGGGTCTCTGATCAAGCTTGTCATGGCAAATGCCAAAGCTGTGACATTGCTGCAAAACCTATTTGTTCTGGAGTGGATGGAGTCTCCTCGTTGACTGGTAGTCATACTGATGTGAAGGCCTCAAAAGAGAACTGTGGAGCATGCAGTCTGAACAATGATCGTGCTGATTCTTTAGAAGAAGAGGTAAAGGGTTCCACAGCGAGGATAGGTCATGTTGAGAGTGCTGATCCTGATGGCTGTGTGGATGTAAAAAAGGAAAGTTTCATGGCTGTTGATGATCTACCACAGGAGTTTGAGGGGGAGCAAGTTGGGGCAACACTGGAGGATCTGTTTTTCTTTAATGGTGAAGAGGAAGATGACAGTGATTGGGAACCTGCTAGTCGCCTTGTTGAGGATAGATGGTTTTGCTTTAACTGCACAATGCCGATTGTGGACCAGATTACACATTGCATGAATTGCCGTGAGCTTAAGGAATCTGCAGTAGATGGATATGATGTTTTCAAAAAACAAATTGCACAGACAGCTTTGTTATCTGCCGACACAGAGTTGCTGCCAGTATCTACAGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAGCTAGAAGTTAAACCAAATCCGCATCCAGAAAGACCGGATCGCCTTCGCGCCATTGCTGCAAGTCTTGCTGCTGCAGGGATCTTTCCCTCAAAATGTGCTTTGGTACCTCCTCGAGAAATCACGAAGGAGGAACTCCTTATGGTTCATAGTCCAGACCACATTGAAAGTGTCGAGCAGACAAAGAACATGCTTTACAGTTACTTCACTTCGGATACTTATGCAAATGGACATTCAGCATGTGCTGCCAAACTTGCAGCTGGATTATGTGCTGATCTTGCTAGTTTGATGGTATCTGGGCGTGTTCGTAATGGTTTTGCTCTGGTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGTTTTTGTCTTCACAACAATGCAGCAGTGGCTGCTTTAGCTGCAAAAAGAGCAGGTGCCAAGAAAGTCCTCATAGTTGACTGGGATGTGCACCATGGAAATGGCACACAAGAGATATTCGAAGGGGATAAAACAGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCAGCTCATGAGGTGGGAGTTCTGGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTGGTGGTGTTGGAGACAATGACTACATCTTTGCTTTTCAGACTGTGGTGCTTCCAATAGCTGCAGAGTTTGCCGCAGACATCACTATAATATCTGCAGGATTCGATGCAGCTAGAGGTGACCCTCTAGGTGGTTGTGATGTCACTCCAGTTGGATACTCTTGGATGACATCCCTGCTAGCTGATTGCTCAAATGGAAGATTGTTGGTGATACTTGAGGGAGGATACAATCTCCAGTCGATATCCTCATCAGCTACTGAAGTTGTTAAGGTCCTACTTGGGGATGGTCCAAATCGTGCTTCATTTGTAGGTTCACCATCAAGAGAGGCCTTGAAGACTGTTTCTCAAGTCCTGAAGATTCAACAACGATTTTGGCCAGTTTTAGGTCCAACATATGCATCACTACAGGCACAGCAGGGGTCGGTTTCTTCCAATCATATCACCAAACGTAATGAGCTGAAGAAAAGGAAGCATTCAGGAGGATTAGGGCCCTTCTGGTGGAAGTTGGGAAGCAAAAGGCTTCTGTACGAAGCGCTTTTTGAGCACCGTCGTCAGAGGAAAATCAAGGGGTCCGGAGAAGGAAAAGCAACTGGTTTCAGCAGTACCTTAGATGGGTAGTTCGCTGACTGTTGATCTTCTAGGCATGAACAGGGTAGTTCGCTGACTGGGTTTCCTAAAGCAGAGTAGCTTGCGTTTACCTAGAGCCTAGTTTTGACTGGTTACTTGGTCTGCCGTTTCAGATGAAGTTTGACAGCAACCCGTTGTGTTAACATGCGTGGTGTATCAACCGAAGTTTCATGTTACCATCTTTTTCTTTGGTTGGTTCGTACCATAGATGTATGTACTGGTCATCGATAGAAAAACCTTGCTGATCTGGAATGGCATGCGTCTCAGTTATTAAACCCTGTTATTGCATATGGATTTTTGCGATTTTCTGCATGATTGACTGCGACGTCTGATGTGCATTTGTTACTCAACTGATTCACCGTC
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |