Tag |
Content |
WERAM ID |
WERAM-Sol-0057 |
Ensembl Protein ID |
Solyc03g119730.2.1 |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
6.90e-113 |
377.8 |
203 |
515 |
HDAC |
Class-I |
8.40e-35 |
121.6 |
224 |
509 |
|
Organism |
Solanum lycopersicum |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsds 91 +++ +de+ml h+ + +++ hpE+p+R+++i +l++ag+ + k++ + ar+ t+eelq++Hsee +e ++++++++ + + + Solyc03g119730.2.1 203 TAVGFDERMLLHTEVVLKSHPHPERPDRLRTIAASLATAGIFPgKCHPIPAREITREELQMIHSEENIEAVDNTKRMHASYF------TPD 287 6799***********************************999779****************************955555544......458 PP class-2.txt 92 iylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeif 182 +y+++ s+ aarla+G + +l++++ +g +kngfa+vRPPGHHa ++amGFCl+nn+a+aa+ +q + kk+livDwDvHhGnGtqeif Solyc03g119730.2.1 288 TYANEYSACAARLAAGLCADLASAIYSGCVKNGFALVRPPGHHAGVKQAMGFCLHNNAAIAASAAQAAGA-KKVLIVDWDVHHGNGTQEIF 377 9*************************************************************99988776.******************** PP class-2.txt 183 ykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgg 273 +++++vly+SlHR++ g+f+p g+ga+devg+ +eg+ vN++w+ g++ d++y++af++vvlpia +F+Pd+ ++saGfDaa+gdplg Solyc03g119730.2.1 378 ERSKSVLYISLHRHEGGRFYP--GTGAADEVGSMGAEGYCVNIPWSRGGVSDNDYIFAFEQVVLPIALDFNPDFTIISAGFDAARGDPLGC 466 *********************..******************************************************************** PP class-2.txt 274 lsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 ++vt+++ya++t++l+ l+gg+++++lEGGynl++i+++++av+k+Llg Solyc03g119730.2.1 467 CDVTPAGYASMTQMLSALSGGKLLVILEGGYNLRSISSSATAVIKVLLG 515 ***********************************************96 PP
HDAC Class-I
class-1.txt 20 hpmkpkrlslt.heLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGas 109 hp +p rl+ + +L+++ k + + +++ ++eel+ hsee+ie + + + +a+ ++ ++ ++ + c+ + a Solyc03g119730.2.1 224 HPERPDRLRTIaASLATAGIFPGKCHPIPAREITREELQMIHSEENIEAVDNTKRMHASYFTP--DTYANEYSACAARLAAGLCADLASAI 312 555666655441344444444555666666666666666666666666666666555555542..23333333333333333333333332 PP class-1.txt 110 leaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.eff 198 ++ ++ a+ hha ++a Gfc n+ +a + k+vl +d d+hhG+g +e f+ ++ v+ +s+h+++ f+ Solyc03g119730.2.1 313 YSGCV-----KNGFALVRPP-GHHAGVKQAMGFCLHNNAAIAASAAQAaGAKKVLIVDWDVHHGNGTQEIFERSKSVLYISLHRHEGgRFY 397 22222.....2223333333.499999**************99988775899********************************97526** PP class-1.txt 199 PgtGdlsdvgaekgkyyavnvPl.kdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlp 287 PgtG ++vg y+vn+P + g+ D+ y f++v+ ++ f+P+ ++ G D+ gD+lg+ +++ g+a++ +++ + Solyc03g119730.2.1 398 PGTGAADEVGSMGAEGYCVNIPWsRGGVSDNDYIFAFEQVVLPIALDFNPDFTIISAGFDAARGDPLGCCDVTPAGYASMTQMLSALsGGK 488 **********************83568**********************************************************997789 PP class-1.txt 288 llvlGGGGYtlrnvaRcwtye 308 llv+ GGY+lr ++ t Solyc03g119730.2.1 489 LLVILEGGYNLRSISSSATAV 509 ************999776655 PP
|
Protein Sequence (Fasta) | MILVQKCVTN SEGNEISESS KMSNLTGGKT ETNLPNQSGV ALCQDLNGRL DGVGSAVVCD 60 YTCHNDGQSG EVSQLGTRDS DGISGLNADP AAITKSAKHE SDMTLEDMYN ARYNFDEDDD 120 DSDWEPSEKQ IEVLKWFCVN CSMINVEDVG NCEVCGEHRE SGILRHGFFA SPYLPVEDIN 180 QDELPVTEDS EDSCKQSSLS SSTAVGFDER MLLHTEVVLK SHPHPERPDR LRTIAASLAT 240 AGIFPGKCHP IPAREITREE LQMIHSEENI EAVDNTKRMH ASYFTPDTYA NEYSACAARL 300 AAGLCADLAS AIYSGCVKNG FALVRPPGHH AGVKQAMGFC LHNNAAIAAS AAQAAGAKKV 360 LIVDWDVHHG NGTQEIFERS KSVLYISLHR HEGGRFYPGT GAADEVGSMG AEGYCVNIPW 420 SRGGVSDNDY IFAFEQVVLP IALDFNPDFT IISAGFDAAR GDPLGCCDVT PAGYASMTQM 480 LSALSGGKLL VILEGGYNLR SISSSATAVI KVLLGESPVI DIDKAVPSKA GLRSVLDVLK 540 IQMNFWPTLE ANFTKLHSQW GSYAFQDTRE QSKKRRRTGL PIWWRLGRKR LLYRVLSKQL 600 RAKSSCNFSC Protein Fasta Sequence
>Solyc03g119730.2.1|Class-I|Solanum lycopersicum MILVQKCVTNSEGNEISESSKMSNLTGGKTETNLPNQSGVALCQDLNGRLDGVGSAVVCDYTCHNDGQSGEVSQLGTRDSDGISGLNADPAAITKSAKHESDMTLEDMYNARYNFDEDDDDSDWEPSEKQIEVLKWFCVNCSMINVEDVGNCEVCGEHRESGILRHGFFASPYLPVEDINQDELPVTEDSEDSCKQSSLSSSTAVGFDERMLLHTEVVLKSHPHPERPDRLRTIAASLATAGIFPGKCHPIPAREITREELQMIHSEENIEAVDNTKRMHASYFTPDTYANEYSACAARLAAGLCADLASAIYSGCVKNGFALVRPPGHHAGVKQAMGFCLHNNAAIAASAAQAAGAKKVLIVDWDVHHGNGTQEIFERSKSVLYISLHRHEGGRFYPGTGAADEVGSMGAEGYCVNIPWSRGGVSDNDYIFAFEQVVLPIALDFNPDFTIISAGFDAARGDPLGCCDVTPAGYASMTQMLSALSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPVIDIDKAVPSKAGLRSVLDVLKIQMNFWPTLEANFTKLHSQWGSYAFQDTREQSKKRRRTGLPIWWRLGRKRLLYRVLSKQLRAKSSCNFSC
|
Nucleotide Sequence (Fasta) | ATGATCTTAG TGCAAAAATG TGTTACTAAT TCTGAAGGCA ATGAGATCTC AGAATCATCT 60 AAAATGAGCA ATTTAACTGG TGGAAAGACT GAAACCAATC TTCCAAATCA ATCGGGAGTT 120 GCTCTATGTC AAGATTTAAA TGGAAGATTA GACGGGGTTG GCTCCGCGGT TGTTTGTGAT 180 TATACTTGTC ATAATGATGG ACAATCTGGG GAGGTGTCAC AACTTGGTAC TAGAGACTCA 240 GATGGGATCT CTGGTTTGAA TGCTGATCCA GCTGCTATAA CTAAAAGTGC TAAGCACGAA 300 AGTGATATGA CCTTGGAGGA TATGTATAAT GCTCGGTATA ATTTTGACGA GGATGATGAT 360 GACAGTGACT GGGAACCATC AGAAAAGCAA ATAGAAGTTC TGAAGTGGTT CTGTGTCAAT 420 TGTTCAATGA TCAATGTCGA GGATGTTGGC AATTGTGAAG TATGCGGAGA ACACAGAGAA 480 TCTGGGATAC TCAGGCATGG ATTTTTTGCA TCTCCATATC TGCCTGTAGA AGATATCAAC 540 CAAGATGAAT TGCCTGTAAC TGAAGATTCT GAAGATTCAT GCAAGCAAAG TTCTTTATCA 600 TCCTCCACTG CTGTAGGGTT TGACGAGAGG ATGTTGCTTC ACACAGAAGT CGTATTGAAG 660 TCTCATCCAC ATCCTGAGAG ACCAGACCGT CTTCGAACCA TTGCAGCTAG CCTTGCAACA 720 GCAGGTATAT TCCCAGGGAA GTGCCATCCC ATTCCTGCAA GAGAGATTAC TAGGGAAGAA 780 CTCCAGATGA TACACTCAGA GGAAAATATT GAAGCCGTTG ATAACACCAA GCGTATGCAT 840 GCCAGTTATT TCACACCTGA TACCTATGCA AATGAATATT CAGCATGTGC TGCCAGGCTT 900 GCAGCAGGTT TATGTGCTGA CCTTGCTTCA GCAATTTACT CTGGATGCGT CAAAAATGGT 960 TTTGCTCTGG TTCGTCCTCC TGGCCACCAT GCTGGTGTGA AACAGGCCAT GGGCTTCTGT 1020 CTCCACAACA ATGCAGCAAT TGCTGCATCA GCAGCTCAGG CGGCTGGTGC AAAGAAGGTG 1080 TTAATAGTTG ATTGGGATGT GCATCATGGG AATGGCACAC AAGAAATATT TGAGAGAAGC 1140 AAATCGGTTT TGTATATATC ATTGCATAGA CATGAGGGTG GAAGATTCTA CCCTGGTACA 1200 GGAGCTGCAG ATGAGGTTGG TTCTATGGGT GCAGAAGGAT ACTGTGTGAA TATTCCTTGG 1260 AGCCGTGGGG GAGTGAGTGA CAATGACTAC ATTTTTGCAT TTGAGCAAGT CGTGCTTCCC 1320 ATAGCTTTGG ATTTCAATCC AGACTTTACT ATCATTTCAG CAGGATTTGA TGCTGCTAGG 1380 GGTGACCCCC TTGGCTGCTG TGACGTAACT CCTGCTGGTT ATGCATCAAT GACTCAGATG 1440 TTGAGTGCAT TGTCAGGTGG AAAATTGCTT GTTATTTTGG AAGGCGGCTA CAATCTTCGC 1500 TCAATTTCAT CATCAGCTAC AGCAGTGATT AAGGTCTTGC TTGGTGAAAG TCCAGTGATT 1560 GACATAGACA AAGCTGTACC TTCCAAAGCT GGACTGCGAA GTGTTTTGGA TGTTCTAAAG 1620 ATTCAGATGA ACTTCTGGCC TACACTGGAG GCAAACTTCA CTAAATTGCA TTCGCAGTGG 1680 GGATCCTATG CTTTTCAGGA CACAAGAGAA CAGAGTAAAA AAAGACGCAG GACTGGTTTA 1740 CCAATATGGT GGAGATTGGG ACGAAAGAGG CTGTTGTATC GCGTACTGTC CAAGCAGCTG 1800 CGTGCAAAGT CCTCTTGTAA TTTTTCTTGT TGATGTTGAT CCTTGTTGTA AGCTAAAGGC 1860 ATTAGGTCTA GACTGTTGTT GTTTTGTAAG CCTGCCCTAC TGTTCCTTTT TTTCTTGTTT 1920 TGTTTAGTCA TTGTACCTCT AACTAAATCT CTCCCTGGAC GTTCTCGGAT GGTAGTTATC 1980 TTGCAGTGTT CTATTTCTAA TCCATCAACG TGCGTACGAG TTATTATGGT TTAATAAAAA 2040 TAACAAC
2048Nucleotide Fasta Sequence
>Solyc03g119730.2.1|Class-I|Solanum lycopersicum ATGATCTTAGTGCAAAAATGTGTTACTAATTCTGAAGGCAATGAGATCTCAGAATCATCTAAAATGAGCAATTTAACTGGTGGAAAGACTGAAACCAATCTTCCAAATCAATCGGGAGTTGCTCTATGTCAAGATTTAAATGGAAGATTAGACGGGGTTGGCTCCGCGGTTGTTTGTGATTATACTTGTCATAATGATGGACAATCTGGGGAGGTGTCACAACTTGGTACTAGAGACTCAGATGGGATCTCTGGTTTGAATGCTGATCCAGCTGCTATAACTAAAAGTGCTAAGCACGAAAGTGATATGACCTTGGAGGATATGTATAATGCTCGGTATAATTTTGACGAGGATGATGATGACAGTGACTGGGAACCATCAGAAAAGCAAATAGAAGTTCTGAAGTGGTTCTGTGTCAATTGTTCAATGATCAATGTCGAGGATGTTGGCAATTGTGAAGTATGCGGAGAACACAGAGAATCTGGGATACTCAGGCATGGATTTTTTGCATCTCCATATCTGCCTGTAGAAGATATCAACCAAGATGAATTGCCTGTAACTGAAGATTCTGAAGATTCATGCAAGCAAAGTTCTTTATCATCCTCCACTGCTGTAGGGTTTGACGAGAGGATGTTGCTTCACACAGAAGTCGTATTGAAGTCTCATCCACATCCTGAGAGACCAGACCGTCTTCGAACCATTGCAGCTAGCCTTGCAACAGCAGGTATATTCCCAGGGAAGTGCCATCCCATTCCTGCAAGAGAGATTACTAGGGAAGAACTCCAGATGATACACTCAGAGGAAAATATTGAAGCCGTTGATAACACCAAGCGTATGCATGCCAGTTATTTCACACCTGATACCTATGCAAATGAATATTCAGCATGTGCTGCCAGGCTTGCAGCAGGTTTATGTGCTGACCTTGCTTCAGCAATTTACTCTGGATGCGTCAAAAATGGTTTTGCTCTGGTTCGTCCTCCTGGCCACCATGCTGGTGTGAAACAGGCCATGGGCTTCTGTCTCCACAACAATGCAGCAATTGCTGCATCAGCAGCTCAGGCGGCTGGTGCAAAGAAGGTGTTAATAGTTGATTGGGATGTGCATCATGGGAATGGCACACAAGAAATATTTGAGAGAAGCAAATCGGTTTTGTATATATCATTGCATAGACATGAGGGTGGAAGATTCTACCCTGGTACAGGAGCTGCAGATGAGGTTGGTTCTATGGGTGCAGAAGGATACTGTGTGAATATTCCTTGGAGCCGTGGGGGAGTGAGTGACAATGACTACATTTTTGCATTTGAGCAAGTCGTGCTTCCCATAGCTTTGGATTTCAATCCAGACTTTACTATCATTTCAGCAGGATTTGATGCTGCTAGGGGTGACCCCCTTGGCTGCTGTGACGTAACTCCTGCTGGTTATGCATCAATGACTCAGATGTTGAGTGCATTGTCAGGTGGAAAATTGCTTGTTATTTTGGAAGGCGGCTACAATCTTCGCTCAATTTCATCATCAGCTACAGCAGTGATTAAGGTCTTGCTTGGTGAAAGTCCAGTGATTGACATAGACAAAGCTGTACCTTCCAAAGCTGGACTGCGAAGTGTTTTGGATGTTCTAAAGATTCAGATGAACTTCTGGCCTACACTGGAGGCAAACTTCACTAAATTGCATTCGCAGTGGGGATCCTATGCTTTTCAGGACACAAGAGAACAGAGTAAAAAAAGACGCAGGACTGGTTTACCAATATGGTGGAGATTGGGACGAAAGAGGCTGTTGTATCGCGTACTGTCCAAGCAGCTGCGTGCAAAGTCCTCTTGTAATTTTTCTTGTTGATGTTGATCCTTGTTGTAAGCTAAAGGCATTAGGTCTAGACTGTTGTTGTTTTGTAAGCCTGCCCTACTGTTCCTTTTTTTCTTGTTTTGTTTAGTCATTGTACCTCTAACTAAATCTCTCCCTGGACGTTCTCGGATGGTAGTTATCTTGCAGTGTTCTATTTCTAATCCATCAACGTGCGTACGAGTTATTATGGTTTAATAAAAATAACAAC
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |