Tag |
Content |
WERAM ID |
WERAM-Sot-0015 |
Ensembl Protein ID |
PGSC0003DMT400014582 |
Gene Name |
PGSC0003DMG400005706 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
1.30e-114 |
384.1 |
203 |
515 |
HDAC |
Class-I |
1.40e-34 |
121.6 |
322 |
509 |
|
Organism |
Solanum tuberosum |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvds 89 +++ +de+ml h+ + +++ hpE+p+R+++i +l++ag+ + k+ + ar+ t+eelq+vHsee +e ++++++++ + + PGSC0003DMT400014582 203 TAVGFDERMLLHTEVVMKSHPHPERPDRLRSIAASLATAGIFPgKCYPIPAREITREELQMVHSEENIEAVDNTKRMHASYF------T 285 6799***********************************999779****************************955555544......4 PP class-2.txt 90 dsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGt 178 ++y++++s+ aarla+G + +l++++ +g++kngfa+vRPPGHHa ++amGFCl+nn+a+aa+ +q + kk+livDwDvHhGnGt PGSC0003DMT400014582 286 PDTYANEHSACAARLAAGLCADLASAIYSGRVKNGFALVRPPGHHAGVKQAMGFCLHNNAAIAASAAQAAGA-KKVLIVDWDVHHGNGT 373 589*************************************************************99988776.**************** PP class-2.txt 179 qeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaae 267 qeif+++++vly+SlHR++ g+f+p g+ga+devg+ +eg+ vN++w+ g++ d++y++af++vvlpia +F+Pdl ++saGfDaa+ PGSC0003DMT400014582 374 QEIFERSKSVLYISLHRHEGGRFYP--GTGAADEVGSMGAEGYCVNIPWSRGGVSDNDYIFAFEQVVLPIALDFNPDLTIISAGFDAAR 460 *************************..************************************************************** PP class-2.txt 268 gdplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 gdplg ++vt+++ya++t+ l+ l+gg+++++lEGGynl++i+++++av+k+Llg PGSC0003DMT400014582 461 GDPLGCCDVTPAGYASMTQILSALSGGKLLVILEGGYNLRSISSSATAVIKVLLG 515 *****************************************************96 PP
HDAC Class-I
class-1.txt 124 ainwaGGlhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgae 210 a+ hha ++a Gfc n+ +a + k+vl +d d+hhG+g +e f+ ++ v+ +s+h+++ f+PgtG ++vg PGSC0003DMT400014582 322 ALVRPP-GHHAGVKQAMGFCLHNNAAIAASAAQAaGAKKVLIVDWDVHHGNGTQEIFERSKSVLYISLHRHEGgRFYPGTGAADEVGSM 409 333333.3999999*************99988775899********************************97526************** PP class-1.txt 211 kgkyyavnvPl.kdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpllvlGGGGYt 297 y+vn+P + g+ D+ y f++v+ ++ f+P+ ++ G D+ gD+lg+ +++ g+a++ +++ +llv+ GGY+ PGSC0003DMT400014582 410 GAEGYCVNIPWsRGGVSDNDYIFAFEQVVLPIALDFNPDLTIISAGFDAARGDPLGCCDVTPAGYASMTQILSALsGGKLLVILEGGYN 498 **********83568**********************************************************997789********** PP class-1.txt 298 lrnvaRcwtye 308 lr ++ t PGSC0003DMT400014582 499 LRSISSSATAV 509 **999776655 PP
|
Protein Sequence (Fasta) | MILVQKCVTS SEGNEISESS NMSYLTGGKT ETNLPNQSEV VLCQDLNGRL DGVGSAVVCD 60 YTCHNDGQSG EVSQLCTRDS DGISGLNADP AAITKSAKHE SDMTLEDMYN ARYNFDEDDD 120 DSDWEPSEKQ IEVLKWFCVN CTMINVEDVG NCEVCGEHRE SGILSHGFFA SPYLPLEDVN 180 QDELPVTEDS EDSCKQSSLS SSTAVGFDER MLLHTEVVMK SHPHPERPDR LRSIAASLAT 240 AGIFPGKCYP IPAREITREE LQMVHSEENI EAVDNTKRMH ASYFTPDTYA NEHSACAARL 300 AAGLCADLAS AIYSGRVKNG FALVRPPGHH AGVKQAMGFC LHNNAAIAAS AAQAAGAKKV 360 LIVDWDVHHG NGTQEIFERS KSVLYISLHR HEGGRFYPGT GAADEVGSMG AEGYCVNIPW 420 SRGGVSDNDY IFAFEQVVLP IALDFNPDLT IISAGFDAAR GDPLGCCDVT PAGYASMTQI 480 LSALSGGKLL VILEGGYNLR SISSSATAVI KVLLGESPTI DIENTVPSKA GLRSVLDVLK 540 IQMNFWPTLE ANFTKLHSEW GSYAFQDTRE QSKKRRRTGL PIWWRWGRKR LLYRILSKQL 600 RAKSSCNFSC Protein Fasta Sequence
>PGSC0003DMT400014582|Class-I|Solanum tuberosum MILVQKCVTSSEGNEISESSNMSYLTGGKTETNLPNQSEVVLCQDLNGRLDGVGSAVVCDYTCHNDGQSGEVSQLCTRDSDGISGLNADPAAITKSAKHESDMTLEDMYNARYNFDEDDDDSDWEPSEKQIEVLKWFCVNCTMINVEDVGNCEVCGEHRESGILSHGFFASPYLPLEDVNQDELPVTEDSEDSCKQSSLSSSTAVGFDERMLLHTEVVMKSHPHPERPDRLRSIAASLATAGIFPGKCYPIPAREITREELQMVHSEENIEAVDNTKRMHASYFTPDTYANEHSACAARLAAGLCADLASAIYSGRVKNGFALVRPPGHHAGVKQAMGFCLHNNAAIAASAAQAAGAKKVLIVDWDVHHGNGTQEIFERSKSVLYISLHRHEGGRFYPGTGAADEVGSMGAEGYCVNIPWSRGGVSDNDYIFAFEQVVLPIALDFNPDLTIISAGFDAARGDPLGCCDVTPAGYASMTQILSALSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPTIDIENTVPSKAGLRSVLDVLKIQMNFWPTLEANFTKLHSEWGSYAFQDTREQSKKRRRTGLPIWWRWGRKRLLYRILSKQLRAKSSCNFSC
|
Nucleotide Sequence (Fasta) | ATTAAACACT TATTTTTTAG ATAGGTAACA GTGATATTTA TAGAACACTT TTTTTTGAGA 60 CAAGGGTAAC TTTGTATTCA CACCAAAAAA TTCATCATCC CAAAAAATGA TGAATAGGAA 120 ACTTACATCC CACCCATGGG TATACTTTAC AAGTGTCCTT TAAAATCAAC TAAATCTACT 180 ATATCCCCTA CAAGATTCTG TTTATAGAAC ACTTTGAAGC GTCACATTAG TGTTATAGTG 240 AAGGACACAC TAAAGTGTAA TAGAGGAAGA GAGGACTGCT TTGGCCTTTG CAGTTCGTAA 300 AATCAGAAGT TTTTGTCCAA ACTTTATGGC TACTAATTAG TATTTGATAT TTGACATAGA 360 TGATTGTGAT CATTGTGGAG AAATGATCTT AGTGCAAAAA TGTGTTACTA GTTCTGAAGG 420 CAATGAGATC TCAGAATCAT CTAACATGAG CTATTTAACT GGTGGAAAGA CTGAAACCAA 480 TCTTCCAAAT CAATCAGAAG TTGTTCTATG TCAAGATTTA AATGGAAGAT TAGACGGGGT 540 TGGCTCCGCA GTTGTTTGTG ATTATACTTG TCATAATGAT GGACAATCTG GGGAGGTGTC 600 ACAACTTTGT ACTAGAGACT CAGATGGGAT CTCCGGTTTG AATGCTGATC CAGCTGCTAT 660 AACTAAAAGT GCTAAGCACG AAAGTGATAT GACCTTGGAA GATATGTATA ATGCTCGGTA 720 TAATTTTGAC GAGGATGATG ATGACAGTGA CTGGGAACCA TCAGAAAAGC AAATAGAAGT 780 TCTGAAGTGG TTCTGTGTCA ATTGTACAAT GATCAATGTC GAGGATGTTG GCAATTGTGA 840 AGTATGTGGA GAACACAGAG AATCTGGGAT ACTCAGTCAT GGATTTTTTG CATCTCCATA 900 TCTGCCTTTA GAGGATGTCA ACCAAGATGA GTTGCCTGTA ACTGAAGATT CTGAAGATTC 960 GTGCAAGCAA AGTTCTTTAT CATCCTCCAC TGCTGTAGGG TTTGACGAGA GGATGTTGCT 1020 TCACACAGAA GTTGTAATGA AGTCTCATCC ACATCCTGAG AGACCAGATC GTCTTCGATC 1080 CATTGCAGCT AGCCTTGCAA CAGCAGGTAT ATTCCCAGGG AAGTGCTATC CCATTCCTGC 1140 AAGAGAAATC ACAAGGGAAG AACTCCAGAT GGTACACTCC GAGGAAAATA TTGAAGCCGT 1200 TGATAACACC AAGCGTATGC ATGCCAGTTA TTTCACACCT GATACATATG CAAATGAACA 1260 TTCAGCATGT GCTGCCAGGC TTGCAGCAGG TTTATGTGCT GACCTTGCTT CAGCAATTTA 1320 CTCTGGACGT GTCAAAAATG GTTTTGCTCT GGTTCGTCCT CCTGGCCACC ATGCTGGTGT 1380 GAAACAGGCC ATGGGCTTCT GTCTCCACAA CAATGCAGCA ATTGCTGCAT CAGCAGCTCA 1440 GGCGGCTGGT GCAAAGAAGG TGTTAATAGT TGATTGGGAT GTGCATCATG GGAATGGCAC 1500 ACAAGAAATA TTTGAGAGAA GCAAATCAGT TTTGTATATA TCATTGCACA GACATGAGGG 1560 TGGAAGATTC TACCCTGGTA CAGGAGCTGC AGATGAGGTT GGTTCTATGG GTGCAGAAGG 1620 GTACTGTGTG AATATTCCTT GGAGCCGTGG GGGAGTGAGT GACAATGACT ACATTTTTGC 1680 ATTTGAGCAA GTCGTGCTTC CCATAGCTTT GGACTTTAAT CCAGACTTAA CTATCATTTC 1740 GGCAGGATTT GATGCTGCTA GGGGTGATCC CCTTGGCTGC TGTGATGTAA CTCCTGCTGG 1800 TTATGCATCA ATGACTCAGA TATTGAGTGC ATTGTCAGGT GGAAAATTGC TTGTTATTCT 1860 GGAAGGCGGC TACAATCTTC GCTCAATTTC ATCATCAGCT ACAGCAGTGA TTAAGGTCTT 1920 GCTTGGTGAA AGTCCAACGA TTGACATAGA AAATACTGTA CCTTCCAAAG CTGGACTGCG 1980 AAGTGTTTTG GATGTTCTAA AGATTCAGAT GAACTTCTGG CCTACACTGG AGGCGAACTT 2040 CACTAAATTG CATTCGGAGT GGGGATCCTA TGCTTTTCAG GATACAAGAG AACAGAGTAA 2100 AAAAAGACGC AGGACTGGTT TACCAATATG GTGGAGATGG GGACGAAAGA GGCTGTTGTA 2160 TCGCATACTG TCCAAGCAGC TGCGTGCAAA GTCCTCTTGT AATTTTTCTT GTTGATGTTG 2220 ATTCTCGTTG TAAGCTACAG GCATTAGGTC TAGACTGTGT TGTTGTTTTG TAAGCCTGCC 2280 CTACTGTTTC TTTTTTTCTT GTTTTGTTTA GTCATTGTAC CTCTTAACTA AATCTCTCCC 2340 TTGACGTACT CGGATAGTTG TTATTTTGCA GTGTTCTATT TCTAATCCAT CAACGTGCGT 2400 ATGAGTGATT ATGGTTTAAT AGAACCTGCA GCAATCAAAT AACAACAAAC ATATCA
2457Nucleotide Fasta Sequence
>PGSC0003DMT400014582|Class-I|Solanum tuberosum ATTAAACACTTATTTTTTAGATAGGTAACAGTGATATTTATAGAACACTTTTTTTTGAGACAAGGGTAACTTTGTATTCACACCAAAAAATTCATCATCCCAAAAAATGATGAATAGGAAACTTACATCCCACCCATGGGTATACTTTACAAGTGTCCTTTAAAATCAACTAAATCTACTATATCCCCTACAAGATTCTGTTTATAGAACACTTTGAAGCGTCACATTAGTGTTATAGTGAAGGACACACTAAAGTGTAATAGAGGAAGAGAGGACTGCTTTGGCCTTTGCAGTTCGTAAAATCAGAAGTTTTTGTCCAAACTTTATGGCTACTAATTAGTATTTGATATTTGACATAGATGATTGTGATCATTGTGGAGAAATGATCTTAGTGCAAAAATGTGTTACTAGTTCTGAAGGCAATGAGATCTCAGAATCATCTAACATGAGCTATTTAACTGGTGGAAAGACTGAAACCAATCTTCCAAATCAATCAGAAGTTGTTCTATGTCAAGATTTAAATGGAAGATTAGACGGGGTTGGCTCCGCAGTTGTTTGTGATTATACTTGTCATAATGATGGACAATCTGGGGAGGTGTCACAACTTTGTACTAGAGACTCAGATGGGATCTCCGGTTTGAATGCTGATCCAGCTGCTATAACTAAAAGTGCTAAGCACGAAAGTGATATGACCTTGGAAGATATGTATAATGCTCGGTATAATTTTGACGAGGATGATGATGACAGTGACTGGGAACCATCAGAAAAGCAAATAGAAGTTCTGAAGTGGTTCTGTGTCAATTGTACAATGATCAATGTCGAGGATGTTGGCAATTGTGAAGTATGTGGAGAACACAGAGAATCTGGGATACTCAGTCATGGATTTTTTGCATCTCCATATCTGCCTTTAGAGGATGTCAACCAAGATGAGTTGCCTGTAACTGAAGATTCTGAAGATTCGTGCAAGCAAAGTTCTTTATCATCCTCCACTGCTGTAGGGTTTGACGAGAGGATGTTGCTTCACACAGAAGTTGTAATGAAGTCTCATCCACATCCTGAGAGACCAGATCGTCTTCGATCCATTGCAGCTAGCCTTGCAACAGCAGGTATATTCCCAGGGAAGTGCTATCCCATTCCTGCAAGAGAAATCACAAGGGAAGAACTCCAGATGGTACACTCCGAGGAAAATATTGAAGCCGTTGATAACACCAAGCGTATGCATGCCAGTTATTTCACACCTGATACATATGCAAATGAACATTCAGCATGTGCTGCCAGGCTTGCAGCAGGTTTATGTGCTGACCTTGCTTCAGCAATTTACTCTGGACGTGTCAAAAATGGTTTTGCTCTGGTTCGTCCTCCTGGCCACCATGCTGGTGTGAAACAGGCCATGGGCTTCTGTCTCCACAACAATGCAGCAATTGCTGCATCAGCAGCTCAGGCGGCTGGTGCAAAGAAGGTGTTAATAGTTGATTGGGATGTGCATCATGGGAATGGCACACAAGAAATATTTGAGAGAAGCAAATCAGTTTTGTATATATCATTGCACAGACATGAGGGTGGAAGATTCTACCCTGGTACAGGAGCTGCAGATGAGGTTGGTTCTATGGGTGCAGAAGGGTACTGTGTGAATATTCCTTGGAGCCGTGGGGGAGTGAGTGACAATGACTACATTTTTGCATTTGAGCAAGTCGTGCTTCCCATAGCTTTGGACTTTAATCCAGACTTAACTATCATTTCGGCAGGATTTGATGCTGCTAGGGGTGATCCCCTTGGCTGCTGTGATGTAACTCCTGCTGGTTATGCATCAATGACTCAGATATTGAGTGCATTGTCAGGTGGAAAATTGCTTGTTATTCTGGAAGGCGGCTACAATCTTCGCTCAATTTCATCATCAGCTACAGCAGTGATTAAGGTCTTGCTTGGTGAAAGTCCAACGATTGACATAGAAAATACTGTACCTTCCAAAGCTGGACTGCGAAGTGTTTTGGATGTTCTAAAGATTCAGATGAACTTCTGGCCTACACTGGAGGCGAACTTCACTAAATTGCATTCGGAGTGGGGATCCTATGCTTTTCAGGATACAAGAGAACAGAGTAAAAAAAGACGCAGGACTGGTTTACCAATATGGTGGAGATGGGGACGAAAGAGGCTGTTGTATCGCATACTGTCCAAGCAGCTGCGTGCAAAGTCCTCTTGTAATTTTTCTTGTTGATGTTGATTCTCGTTGTAAGCTACAGGCATTAGGTCTAGACTGTGTTGTTGTTTTGTAAGCCTGCCCTACTGTTTCTTTTTTTCTTGTTTTGTTTAGTCATTGTACCTCTTAACTAAATCTCTCCCTTGACGTACTCGGATAGTTGTTATTTTGCAGTGTTCTATTTCTAATCCATCAACGTGCGTATGAGTGATTATGGTTTAATAGAACCTGCAGCAATCAAATAACAACAAACATATCA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |