Tag |
Content |
WERAM ID |
WERAM-Bro-0054 |
Ensembl Protein ID |
Bo3g071540.1 |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
1.10e-115 |
387.8 |
122 |
656 |
HDAC |
Class-I |
3.90e-35 |
123.4 |
247 |
428 |
|
Organism |
Brassica oleracea |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsiylesk 97 +++ +de+ml h+ e ++ h+E+p+R++ai +l++ag+ + + + ++ar+ tk+elq+vH++ehv+ ++t+++l+++ +s ++y+++ Bo3g071540.1 122 TAVGFDERMLLHSEFEVKELPHVERPDRLRAIAASLATAGVFPgRSFPIHAREITKQELQMVHTSEHVDAVGTTSQLQHSYFTS------DTYANEY 212 6799***********************************9987699****************************7777666554......78***** PP class-2.txt 98 sikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylSlH 194 s++aarla+G + +l++++++g++kngfa+vRPPGHHa + amGFCl+nn+avaa ++q + +k+livDwDvHhGnGtqeif+k+++v+y+SlH Bo3g071540.1 213 SARAARLAAGLCADLAKEIFSGRVKNGFALVRPPGHHAGIKDAMGFCLHNNAAVAALVAQAAGA-RKVLIVDWDVHHGNGTQEIFEKNKSVMYISLH 308 ********************************************************99887766.******************************** PP class-2.txt 195 RydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkqllkl 291 R++ g+f+p g+ga++evg+ +eg+ vNv+w++ ++gd++y++af++vvlpia+ F+Pd+v+vsaGfDaa+gdplg ++vt+++y+++t++l +l Bo3g071540.1 309 RHEGGKFYP--GTGAANEVGTYGAEGYCVNVPWSCSGVGDRDYIYAFQHVVLPIASAFSPDFVIVSAGFDAAKGDPLGCCKVTPAGYSRMTQMLGDL 403 *********..************************************************************************************** PP class-2.txt 292 aggrvvlvlEGGynlkaiaeaveavvkaLlg 322 +gg+++++lEGGynl++++++++av+k+L+g Bo3g071540.1 404 CGGKMLVILEGGYNLRSMSSSATAVIKVLMG 434 ****************************986 PP class-2.txt 53 katkeelqlvHseehvelletae.klekeeles................ltvdsdsiy 93 k+++ee++l+ e e+ + +lek+++++ ++v +++y Bo3g071540.1 599 KKELEEMALLRRELEEERAKVRAmRLEKKRMKEakvlksevkrlrksrtDCVAREKMY 656 3333333333322111111111112222222221111122222322333333444444 PP
HDAC Class-I
class-1.txt 131 lhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlk.dg 224 hha ++a Gfc n+ +a l + ++vl +d d+hhG+g +e f++ + vm +s+h+++ +f+PgtG ++vg+ y+vnvP + g Bo3g071540.1 247 GHHAGIKDAMGFCLHNNAAVAALVAQAaGARKVLIVDWDVHHGNGTQEIFEKNKSVMYISLHRHEGgKFYPGTGAANEVGTYGAEGYCVNVPWScSG 343 49************999888777666548899*******************************97527************************9758* PP class-1.txt 225 idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRcwtye 308 + D+ y f++v+ ++ +af+P+ v++ G D+ gD+lg+ +++ g++++ +++ + ++lv+ GGY+lr ++ t Bo3g071540.1 344 VGDRDYIYAFQHVVLPIASAFSPDFVIVSAGFDAAKGDPLGCCKVTPAGYSRMTQMLGDLcGGKMLVILEGGYNLRSMSSSATAV 428 **********************************************************998899*************99776655 PP
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Protein Sequence (Fasta) | MVVESLESSC EVSKRKHGDS GDGIILLDEF SNGDVNSVSS VSSKRAKVSR EMTFQEDSDW 60 EPMQQTKPVE SVKWFCVNCT MPNPAQGVIL SHGCFASLFC KDNGLTQVEE KRGGSSPSTS 120 STAVGFDERM LLHSEFEVKE LPHVERPDRL RAIAASLATA GVFPGRSFPI HAREITKQEL 180 QMVHTSEHVD AVGTTSQLQH SYFTSDTYAN EYSARAARLA AGLCADLAKE IFSGRVKNGF 240 ALVRPPGHHA GIKDAMGFCL HNNAAVAALV AQAAGARKVL IVDWDVHHGN GTQEIFEKNK 300 SVMYISLHRH EGGKFYPGTG AANEVGTYGA EGYCVNVPWS CSGVGDRDYI YAFQHVVLPI 360 ASAFSPDFVI VSAGFDAAKG DPLGCCKVTP AGYSRMTQML GDLCGGKMLV ILEGGYNLRS 420 MSSSATAVIK VLMGENAEND LPIATAPPSR ACLRTVLDVM NIQMKFWPSL ATSYSKLLSE 480 WEASRLEKRA EPRREAVVTQ GAVDAEAVVV DEAAPSEFAF NFSYSGDGSL LDDKEACGEL 540 FRLFRLEPDP SRDLSPPDET NLYNEYALSV ARSIASVNAM VAEYENALRT ARADLEEQKK 600 ELEEMALLRR ELEEERAKVR AMRLEKKRMK EAKVLKSEVK RLRKSRTDCV AREKMYNELV 660 AKSASCFEKM RKSIVLELNQ VSGILSADRE TLADSNDDDD EHEI 704Protein Fasta Sequence
>Bo3g071540.1|Class-I|Brassica oleracea MVVESLESSCEVSKRKHGDSGDGIILLDEFSNGDVNSVSSVSSKRAKVSREMTFQEDSDWEPMQQTKPVESVKWFCVNCTMPNPAQGVILSHGCFASLFCKDNGLTQVEEKRGGSSPSTSSTAVGFDERMLLHSEFEVKELPHVERPDRLRAIAASLATAGVFPGRSFPIHAREITKQELQMVHTSEHVDAVGTTSQLQHSYFTSDTYANEYSARAARLAAGLCADLAKEIFSGRVKNGFALVRPPGHHAGIKDAMGFCLHNNAAVAALVAQAAGARKVLIVDWDVHHGNGTQEIFEKNKSVMYISLHRHEGGKFYPGTGAANEVGTYGAEGYCVNVPWSCSGVGDRDYIYAFQHVVLPIASAFSPDFVIVSAGFDAAKGDPLGCCKVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSMSSSATAVIKVLMGENAENDLPIATAPPSRACLRTVLDVMNIQMKFWPSLATSYSKLLSEWEASRLEKRAEPRREAVVTQGAVDAEAVVVDEAAPSEFAFNFSYSGDGSLLDDKEACGELFRLFRLEPDPSRDLSPPDETNLYNEYALSVARSIASVNAMVAEYENALRTARADLEEQKKELEEMALLRRELEEERAKVRAMRLEKKRMKEAKVLKSEVKRLRKSRTDCVAREKMYNELVAKSASCFEKMRKSIVLELNQVSGILSADRETLADSNDDDDEHEI
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Nucleotide Sequence (Fasta) | ATGGTTGTAG AATCTCTCGA GAGTTCCTGT GAGGTTTCAA AGAGGAAACA TGGAGACAGT 60 GGTGACGGAA TTATCCTCCT CGATGAGTTT AGCAATGGAG ACGTGAATTC TGTATCTAGT 120 GTTTCATCCA AAAGAGCTAA GGTTTCAAGA GAAATGACGT TTCAAGAAGA TAGTGATTGG 180 GAGCCTATGC AGCAGACAAA GCCTGTTGAG TCTGTGAAGT GGTTTTGCGT CAATTGCACT 240 ATGCCAAACC CTGCACAAGG AGTCATCCTG AGTCATGGAT GTTTTGCATC TCTGTTTTGC 300 AAAGATAATG GTCTCACCCA AGTTGAAGAG AAACGTGGAG GTAGCTCGCC TTCAACCAGC 360 TCAACAGCTG TTGGTTTCGA CGAGAGAATG TTGCTACACT CTGAATTCGA AGTGAAGGAA 420 CTTCCACATG TTGAGAGACC TGACCGTCTT CGAGCTATAG CTGCCAGTCT CGCCACAGCT 480 GGCGTTTTTC CTGGAAGAAG CTTTCCTATT CATGCAAGGG AAATCACTAA ACAAGAACTC 540 CAGATGGTAC ACACTTCAGA GCATGTTGAT GCTGTTGGTA CTACAAGCCA GCTTCAACAT 600 AGCTACTTCA CCTCTGACAC ATATGCTAAT GAGTATTCAG CACGTGCTGC TAGACTTGCA 660 GCAGGTTTGT GCGCTGATCT AGCTAAAGAA ATCTTCTCTG GCCGTGTCAA AAATGGTTTC 720 GCTTTGGTTA GACCTCCAGG TCATCACGCT GGCATCAAAG ATGCTATGGG GTTTTGCCTT 780 CACAATAATG CAGCTGTTGC TGCATTAGTA GCACAAGCAG CAGGGGCAAG GAAGGTGCTC 840 ATTGTGGACT GGGATGTCCA TCATGGAAAT GGAACTCAAG AGATATTCGA AAAAAACAAA 900 TCTGTAATGT ACATTTCCTT GCACAGACAT GAAGGAGGAA AGTTCTATCC GGGTACTGGA 960 GCTGCTAATG AGGTTGGTAC ATATGGCGCT GAAGGTTATT GTGTGAATGT TCCATGGAGT 1020 TGTAGTGGAG TTGGTGATAG AGACTATATA TATGCCTTTC AGCATGTAGT TCTTCCAATA 1080 GCTTCTGCAT TCTCTCCTGA TTTTGTAATC GTATCAGCGG GGTTTGATGC AGCTAAAGGA 1140 GACCCACTAG GATGCTGTAA AGTGACTCCG GCTGGTTATT CTCGAATGAC ACAGATGTTG 1200 GGTGATCTCT GCGGCGGGAA AATGCTAGTT ATTCTCGAGG GCGGCTACAA TCTTCGCTCC 1260 ATGTCTTCTT CTGCTACAGC AGTGATCAAG GTGCTTATGG GAGAAAATGC GGAGAACGAC 1320 TTGCCTATAG CTACAGCTCC TCCTTCAAGA GCCTGCCTGC GAACCGTTCT TGATGTAATG 1380 AATATCCAAA TGAAGTTCTG GCCTTCACTT GCTACCTCCT ACTCCAAGTT ACTATCAGAG 1440 TGGGAAGCAA GTAGGCTAGA GAAAAGAGCG GAGCCTAGGA GAGAGGCGGT TGTGACTCAG 1500 GGGGCCGTGG ATGCGGAGGC TGTCGTGGTG GATGAGGCAG CTCCGTCTGA GTTCGCGTTT 1560 AATTTCAGCT ACTCCGGTGA TGGTTCGCTT CTCGATGACA AAGAAGCTTG TGGGGAACTG 1620 TTCCGTTTGT TCCGTCTTGA ACCTGATCCG TCCAGAGATC TCTCCCCTCC TGATGAGACC 1680 AATTTGTACA ATGAGTATGC TCTCAGTGTT GCTAGGTCAA TAGCGAGTGT GAACGCGATG 1740 GTAGCTGAGT ATGAGAATGC GCTCAGGACT GCTAGGGCTG ACCTTGAAGA GCAGAAAAAG 1800 GAGCTTGAGG AGATGGCCTT GCTGCGCAGA GAGCTGGAAG AAGAGAGGGC GAAGGTTCGA 1860 GCGATGCGTT TGGAGAAAAA GCGCATGAAG GAGGCTAAGG TCTTAAAGTC TGAAGTTAAA 1920 CGTCTCAGGA AGTCACGGAC TGATTGTGTT GCGAGGGAGA AGATGTACAA TGAGCTGGTT 1980 GCCAAGTCTG CTTCTTGTTT TGAGAAGATG AGGAAGTCGA TTGTATTAGA GCTGAACCAG 2040 GTATCAGGAA TCCTCTCTGC TGATCGTGAG ACTCTGGCGG ATAGTAACGA CGATGATGAT 2100 GAGCACGAGA TTTAA
2116Nucleotide Fasta Sequence
>Bo3g071540.1|Class-I|Brassica oleracea ATGGTTGTAGAATCTCTCGAGAGTTCCTGTGAGGTTTCAAAGAGGAAACATGGAGACAGTGGTGACGGAATTATCCTCCTCGATGAGTTTAGCAATGGAGACGTGAATTCTGTATCTAGTGTTTCATCCAAAAGAGCTAAGGTTTCAAGAGAAATGACGTTTCAAGAAGATAGTGATTGGGAGCCTATGCAGCAGACAAAGCCTGTTGAGTCTGTGAAGTGGTTTTGCGTCAATTGCACTATGCCAAACCCTGCACAAGGAGTCATCCTGAGTCATGGATGTTTTGCATCTCTGTTTTGCAAAGATAATGGTCTCACCCAAGTTGAAGAGAAACGTGGAGGTAGCTCGCCTTCAACCAGCTCAACAGCTGTTGGTTTCGACGAGAGAATGTTGCTACACTCTGAATTCGAAGTGAAGGAACTTCCACATGTTGAGAGACCTGACCGTCTTCGAGCTATAGCTGCCAGTCTCGCCACAGCTGGCGTTTTTCCTGGAAGAAGCTTTCCTATTCATGCAAGGGAAATCACTAAACAAGAACTCCAGATGGTACACACTTCAGAGCATGTTGATGCTGTTGGTACTACAAGCCAGCTTCAACATAGCTACTTCACCTCTGACACATATGCTAATGAGTATTCAGCACGTGCTGCTAGACTTGCAGCAGGTTTGTGCGCTGATCTAGCTAAAGAAATCTTCTCTGGCCGTGTCAAAAATGGTTTCGCTTTGGTTAGACCTCCAGGTCATCACGCTGGCATCAAAGATGCTATGGGGTTTTGCCTTCACAATAATGCAGCTGTTGCTGCATTAGTAGCACAAGCAGCAGGGGCAAGGAAGGTGCTCATTGTGGACTGGGATGTCCATCATGGAAATGGAACTCAAGAGATATTCGAAAAAAACAAATCTGTAATGTACATTTCCTTGCACAGACATGAAGGAGGAAAGTTCTATCCGGGTACTGGAGCTGCTAATGAGGTTGGTACATATGGCGCTGAAGGTTATTGTGTGAATGTTCCATGGAGTTGTAGTGGAGTTGGTGATAGAGACTATATATATGCCTTTCAGCATGTAGTTCTTCCAATAGCTTCTGCATTCTCTCCTGATTTTGTAATCGTATCAGCGGGGTTTGATGCAGCTAAAGGAGACCCACTAGGATGCTGTAAAGTGACTCCGGCTGGTTATTCTCGAATGACACAGATGTTGGGTGATCTCTGCGGCGGGAAAATGCTAGTTATTCTCGAGGGCGGCTACAATCTTCGCTCCATGTCTTCTTCTGCTACAGCAGTGATCAAGGTGCTTATGGGAGAAAATGCGGAGAACGACTTGCCTATAGCTACAGCTCCTCCTTCAAGAGCCTGCCTGCGAACCGTTCTTGATGTAATGAATATCCAAATGAAGTTCTGGCCTTCACTTGCTACCTCCTACTCCAAGTTACTATCAGAGTGGGAAGCAAGTAGGCTAGAGAAAAGAGCGGAGCCTAGGAGAGAGGCGGTTGTGACTCAGGGGGCCGTGGATGCGGAGGCTGTCGTGGTGGATGAGGCAGCTCCGTCTGAGTTCGCGTTTAATTTCAGCTACTCCGGTGATGGTTCGCTTCTCGATGACAAAGAAGCTTGTGGGGAACTGTTCCGTTTGTTCCGTCTTGAACCTGATCCGTCCAGAGATCTCTCCCCTCCTGATGAGACCAATTTGTACAATGAGTATGCTCTCAGTGTTGCTAGGTCAATAGCGAGTGTGAACGCGATGGTAGCTGAGTATGAGAATGCGCTCAGGACTGCTAGGGCTGACCTTGAAGAGCAGAAAAAGGAGCTTGAGGAGATGGCCTTGCTGCGCAGAGAGCTGGAAGAAGAGAGGGCGAAGGTTCGAGCGATGCGTTTGGAGAAAAAGCGCATGAAGGAGGCTAAGGTCTTAAAGTCTGAAGTTAAACGTCTCAGGAAGTCACGGACTGATTGTGTTGCGAGGGAGAAGATGTACAATGAGCTGGTTGCCAAGTCTGCTTCTTGTTTTGAGAAGATGAGGAAGTCGATTGTATTAGAGCTGAACCAGGTATCAGGAATCCTCTCTGCTGATCGTGAGACTCTGGCGGATAGTAACGACGATGATGATGAGCACGAGATTTAA
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Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |