Tag |
Content |
WERAM ID |
WERAM-Brr-0115 |
Ensembl Protein ID |
Bra022329.1-P |
Gene Name |
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Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
3.20e-117 |
392.3 |
147 |
459 |
HDAC |
Class-I |
9.90e-35 |
121.6 |
273 |
453 |
|
Organism |
Brassica rapa |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsiyles 96 +++ +de+ml h+ e + + hpE+p+R++ai +l++ag+ + +++ ++ar+ tk+elq+vH++e+v+ ++ +++l + + ++y+++ Bra022329.1-P 147 TAVGFDERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPgRCLPIHAREITKQELQMVHTSELVDAVNITSQLLYSYFT------TDTYANE 236 6799***********************************998769***************************99655554444......478**** PP class-2.txt 97 ksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylS 192 s++aarla+G + +l++++ +g++kngfa+vRPPGHHa ++amGFCl+nn+avaa ++q + +k+livDwDvHhGnGtqeif+++++vly+S Bra022329.1-P 237 YSARAARLAAGLCADLATEIYSGRVKNGFALVRPPGHHAGIKHAMGFCLHNNAAVAALVAQAAGA-RKVLIVDWDVHHGNGTQEIFEQNKSVLYIS 331 *********************************************************99887766.****************************** PP class-2.txt 193 lHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkql 288 lHR++ g+f+p g+ga+devg++ +eg+ vNv+w++g++gd++y++af++vvlpia+ F+Pd+v+vsaGfDaa+gdplg ++vt+++y+++t++l Bra022329.1-P 332 LHRHEGGNFYP--GTGAADEVGTNGAEGYCVNVPWSCGGVGDKDYIYAFQHVVLPIASAFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQML 425 ***********..*********************************************************************************** PP class-2.txt 289 lklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 +++gg+++++lEGGynl++i+++++av+k+Llg Bra022329.1-P 426 GDICGGKMLVILEGGYNLRSISSSATAVIKVLLG 459 ********************************96 PP
HDAC Class-I
class-1.txt 132 hhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlk.dg 224 hha ++a Gfc n+ +a l + ++vl +d d+hhG+g +e f++ + v+ +s+h+++ +f+PgtG ++vg++ y+vnvP + g Bra022329.1-P 273 HHAGIKHAMGFCLHNNAAVAALVAQAaGARKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGgNFYPGTGAADEVGTNGAEGYCVNVPWScGG 368 9************999888777666548899*******************************97527************************98368 PP class-1.txt 225 idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRcwtye 308 + D+ y f++v+ ++ +af+P+ v++ G D+ gD+lg+ +++ g++++ +++ + ++lv+ GGY+lr ++ t Bra022329.1-P 369 VGDKDYIYAFQHVVLPIASAFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQMLGDIcGGKMLVILEGGYNLRSISSSATAV 453 *********************************************************9987999************999776655 PP
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Protein Sequence (Fasta) | MVVETLDSSC DGSKRKHANG GEETHLDELS NGDNGVSSTK RARVSRGEMT FQDIYDADAL 60 LNEEDEEDDS DWEPLQQQMM PVEFVKWGCV NCTMSNPGDM VHCHICGEHK ESGILRHGYL 120 ASPFFKDTGL AEVEEKCGGS SSATSSTAVG FDERMLLHSE FEVKAQPHPE RPDRLRAIAA 180 SLATAGVFPG RCLPIHAREI TKQELQMVHT SELVDAVNIT SQLLYSYFTT DTYANEYSAR 240 AARLAAGLCA DLATEIYSGR VKNGFALVRP PGHHAGIKHA MGFCLHNNAA VAALVAQAAG 300 ARKVLIVDWD VHHGNGTQEI FEQNKSVLYI SLHRHEGGNF YPGTGAADEV GTNGAEGYCV 360 NVPWSCGGVG DKDYIYAFQH VVLPIASAFS PDFVIVSAGF DAARGDPLGC CDVTPAGYSR 420 MTQMLGDICG GKMLVILEGG YNLRSISSSA TAVIKVLLGE NSENDDLPIA TTPSKAGLET 480 VIEVMNIQMK FWPSLATAYS KLLSEWETRL IENKKNQVKR KLVRVPTWWK WGRKKFMYRC 540 LDSVEYFFSF KWQKELYYGA RAAPLDYLSI Protein Fasta Sequence
>Bra022329.1-P|Class-I|Brassica rapa MVVETLDSSCDGSKRKHANGGEETHLDELSNGDNGVSSTKRARVSRGEMTFQDIYDADALLNEEDEEDDSDWEPLQQQMMPVEFVKWGCVNCTMSNPGDMVHCHICGEHKESGILRHGYLASPFFKDTGLAEVEEKCGGSSSATSSTAVGFDERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPGRCLPIHAREITKQELQMVHTSELVDAVNITSQLLYSYFTTDTYANEYSARAARLAAGLCADLATEIYSGRVKNGFALVRPPGHHAGIKHAMGFCLHNNAAVAALVAQAAGARKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGNFYPGTGAADEVGTNGAEGYCVNVPWSCGGVGDKDYIYAFQHVVLPIASAFSPDFVIVSAGFDAARGDPLGCCDVTPAGYSRMTQMLGDICGGKMLVILEGGYNLRSISSSATAVIKVLLGENSENDDLPIATTPSKAGLETVIEVMNIQMKFWPSLATAYSKLLSEWETRLIENKKNQVKRKLVRVPTWWKWGRKKFMYRCLDSVEYFFSFKWQKELYYGARAAPLDYLSI
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Nucleotide Sequence (Fasta) | ATGGTTGTAG AAACTCTCGA CAGTTCCTGT GACGGTTCAA AGAGAAAACA TGCCAACGGT 60 GGTGAAGAAA CTCACCTCGA TGAGCTTAGC AATGGAGACA ATGGGGTTTC ATCAACCAAA 120 AGAGCTAGGG TTTCAAGAGG AGAGATGACG TTTCAGGATA TCTACGATGC AGATGCATTG 180 CTGAATGAAG AAGATGAGGA GGATGATAGT GATTGGGAGC CTTTGCAGCA GCAGATGATG 240 CCCGTTGAGT TTGTGAAATG GGGTTGCGTC AATTGCACTA TGTCGAATCC TGGTGATATG 300 GTCCATTGTC ATATATGTGG TGAGCACAAG GAATCTGGCA TCCTGAGGCA TGGATACTTA 360 GCATCTCCGT TTTTCAAAGA CACTGGTCTC GCCGAAGTCG AAGAGAAATG TGGAGGAAGC 420 TCATCTGCAA CTAGCTCAAC AGCTGTTGGT TTCGACGAGA GAATGTTGCT ACACTCTGAA 480 TTCGAAGTGA AGGCACAACC ACATCCCGAG AGACCTGATC GTCTTCGAGC TATAGCTGCT 540 AGTCTTGCCA CAGCTGGCGT CTTTCCTGGA AGATGCTTGC CTATTCATGC AAGGGAGATC 600 ACGAAACAAG AGCTCCAGAT GGTCCACACT TCAGAGCTTG TTGACGCTGT TAATATCACA 660 AGCCAGCTTC TCTACAGCTA CTTCACCACT GATACATATG CTAATGAGTA TTCAGCACGT 720 GCTGCTAGAC TTGCAGCTGG TTTATGCGCT GACCTTGCTA CAGAAATTTA CTCTGGCCGT 780 GTTAAAAATG GATTCGCTTT GGTGAGACCT CCTGGTCACC ATGCTGGCAT CAAACATGCT 840 ATGGGGTTTT GCCTTCACAA TAATGCAGCT GTTGCTGCAT TAGTAGCTCA GGCAGCAGGG 900 GCAAGGAAGG TGCTGATTGT GGACTGGGAT GTCCATCATG GAAATGGAAC CCAAGAGATA 960 TTCGAGCAAA ACAAATCTGT ATTGTACATT TCCTTGCACA GGCATGAAGG GGGAAACTTT 1020 TATCCTGGTA CTGGAGCTGC TGATGAGGTT GGTACAAATG GTGCTGAAGG TTATTGTGTA 1080 AATGTTCCAT GGAGTTGTGG TGGAGTTGGT GATAAAGACT ACATCTATGC CTTTCAGCAT 1140 GTGGTTCTAC CCATAGCTTC TGCATTTTCT CCAGATTTCG TCATCGTATC AGCTGGGTTT 1200 GATGCGGCTA GAGGAGACCC ATTAGGATGC TGTGATGTAA CTCCAGCTGG TTATTCTAGA 1260 ATGACACAGA TGTTGGGTGA TATCTGCGGT GGGAAAATGC TTGTTATTCT CGAGGGCGGC 1320 TACAATCTTC GCTCCATCTC TTCTTCTGCT ACAGCAGTGA TCAAGGTGCT TCTGGGTGAA 1380 AATTCTGAGA ACGATGACTT GCCTATAGCT ACCACGCCTT CAAAAGCCGG CTTGGAAACT 1440 GTTATTGAAG TAATGAATAT CCAAATGAAG TTCTGGCCAT CACTTGCTAC CGCCTACTCC 1500 AAATTACTCT CAGAGTGGGA AACACGTCTG ATCGAAAACA AAAAGAACCA GGTGAAAAGG 1560 AAGCTGGTTC GGGTTCCCAC TTGGTGGAAA TGGGGAAGGA AGAAGTTTAT GTACAGATGT 1620 CTCGATTCTG TTGAGTATTT CTTTAGCTTT AAGTGGCAGA AAGAATTGTA TTATGGAGCT 1680 CGTGCTGCTC CTTTGGATTA TCTGAGTATC TAA
1714Nucleotide Fasta Sequence
>Bra022329.1-P|Class-I|Brassica rapa ATGGTTGTAGAAACTCTCGACAGTTCCTGTGACGGTTCAAAGAGAAAACATGCCAACGGTGGTGAAGAAACTCACCTCGATGAGCTTAGCAATGGAGACAATGGGGTTTCATCAACCAAAAGAGCTAGGGTTTCAAGAGGAGAGATGACGTTTCAGGATATCTACGATGCAGATGCATTGCTGAATGAAGAAGATGAGGAGGATGATAGTGATTGGGAGCCTTTGCAGCAGCAGATGATGCCCGTTGAGTTTGTGAAATGGGGTTGCGTCAATTGCACTATGTCGAATCCTGGTGATATGGTCCATTGTCATATATGTGGTGAGCACAAGGAATCTGGCATCCTGAGGCATGGATACTTAGCATCTCCGTTTTTCAAAGACACTGGTCTCGCCGAAGTCGAAGAGAAATGTGGAGGAAGCTCATCTGCAACTAGCTCAACAGCTGTTGGTTTCGACGAGAGAATGTTGCTACACTCTGAATTCGAAGTGAAGGCACAACCACATCCCGAGAGACCTGATCGTCTTCGAGCTATAGCTGCTAGTCTTGCCACAGCTGGCGTCTTTCCTGGAAGATGCTTGCCTATTCATGCAAGGGAGATCACGAAACAAGAGCTCCAGATGGTCCACACTTCAGAGCTTGTTGACGCTGTTAATATCACAAGCCAGCTTCTCTACAGCTACTTCACCACTGATACATATGCTAATGAGTATTCAGCACGTGCTGCTAGACTTGCAGCTGGTTTATGCGCTGACCTTGCTACAGAAATTTACTCTGGCCGTGTTAAAAATGGATTCGCTTTGGTGAGACCTCCTGGTCACCATGCTGGCATCAAACATGCTATGGGGTTTTGCCTTCACAATAATGCAGCTGTTGCTGCATTAGTAGCTCAGGCAGCAGGGGCAAGGAAGGTGCTGATTGTGGACTGGGATGTCCATCATGGAAATGGAACCCAAGAGATATTCGAGCAAAACAAATCTGTATTGTACATTTCCTTGCACAGGCATGAAGGGGGAAACTTTTATCCTGGTACTGGAGCTGCTGATGAGGTTGGTACAAATGGTGCTGAAGGTTATTGTGTAAATGTTCCATGGAGTTGTGGTGGAGTTGGTGATAAAGACTACATCTATGCCTTTCAGCATGTGGTTCTACCCATAGCTTCTGCATTTTCTCCAGATTTCGTCATCGTATCAGCTGGGTTTGATGCGGCTAGAGGAGACCCATTAGGATGCTGTGATGTAACTCCAGCTGGTTATTCTAGAATGACACAGATGTTGGGTGATATCTGCGGTGGGAAAATGCTTGTTATTCTCGAGGGCGGCTACAATCTTCGCTCCATCTCTTCTTCTGCTACAGCAGTGATCAAGGTGCTTCTGGGTGAAAATTCTGAGAACGATGACTTGCCTATAGCTACCACGCCTTCAAAAGCCGGCTTGGAAACTGTTATTGAAGTAATGAATATCCAAATGAAGTTCTGGCCATCACTTGCTACCGCCTACTCCAAATTACTCTCAGAGTGGGAAACACGTCTGATCGAAAACAAAAAGAACCAGGTGAAAAGGAAGCTGGTTCGGGTTCCCACTTGGTGGAAATGGGGAAGGAAGAAGTTTATGTACAGATGTCTCGATTCTGTTGAGTATTTCTTTAGCTTTAAGTGGCAGAAAGAATTGTATTATGGAGCTCGTGCTGCTCCTTTGGATTATCTGAGTATCTAA
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Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |