Tag |
Content |
WERAM ID |
WERAM-Zem-0064 |
Ensembl Protein ID |
GRMZM2G107309_P01 |
Gene Name |
hda110 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
1.20e-110 |
371.3 |
204 |
516 |
HDAC |
Class-I |
2.20e-34 |
121.1 |
224 |
509 |
|
Organism |
Zea mays |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeaglle.kleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsi 92 +++ +de+ml h+ le + + hpE+p+R++ai +l++ag+ + k+ + r+ tkeel++vHs +h+e +e+++++ + + ++ GRMZM2G107309_P01 204 TAIGFDERMLLHSELEVKPNPHPERPDRLRAIAASLAAAGIFPsKCALVPPREITKEELLMVHSPDHIESVEQTKNMLYSYFT------SDT 289 6789***********************************999758*****************************665555444......478 PP class-2.txt 93 ylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifyk 184 y++ +s+ aa+la+G + +l++ +++g+++ngfa+vRPPGHHa ++amGFCl+nn+avaa +++ +kk+livDwDvHhGnGtqeif GRMZM2G107309_P01 290 YANGHSACAAKLAAGLCADLASLIVSGRVRNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRA-GAKKVLIVDWDVHHGNGTQEIFDG 380 ************************************************************9776655.56********************** PP class-2.txt 185 dpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsv 276 d+ vly+SlHR+++g+f+p g+ga++evg +g+gf+vN++w+ g++gd +y++af++vvlpia+eF+ d+ ++saGfDaa+gdplg ++v GRMZM2G107309_P01 381 DKTVLYISLHRHEDGNFYP--GTGAAHEVGVLDGQGFSVNIPWSRGGVGDDDYIFAFQTVVLPIASEFAADITIISAGFDAARGDPLGCCDV 470 *******************..*********************************************************************** PP class-2.txt 277 takcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 t+++y+ +t l + ++gr++++lEGGynl++i++++++vvk+Llg GRMZM2G107309_P01 471 TPTGYSWMTSLLAGSSNGRLLVILEGGYNLRSISSSATEVVKVLLG 516 ********************************************96 PP
HDAC Class-I
class-1.txt 19 khpmkpkrlslt.heLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGas 109 hp +p rl+ + +L+ + k +v p++ ++eell +hs ++ie +++ ++ + ++ + ++ g+ + + c+ + s GRMZM2G107309_P01 224 PHPERPDRLRAIaASLAAAGIFPSKCALVPPREITKEELLMVHSPDHIESVEQTKNMLYSYFT--SDTYANGHSACAAKLAAGLCADLA--S 311 588888888765156666666778899999999999999999999998888877766666655..566777777766666666666554..4 PP class-1.txt 110 leaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effP 199 l + ++ ++ a+ G hha ++a Gfc n+ +a l ++ k+vl +d d+hhG+g +e f + v+ +s+h++++ +f+P GRMZM2G107309_P01 312 LIVSGRVRNG---FALVRPPG-HHAGVKQAMGFCLHNNAAVAALAAKRaGAKKVLIVDWDVHHGNGTQEIFDGDKTVLYISLHRHEDgNFYP 399 4444444444...34444444.999999***********9999999996799*********************************984699* PP class-1.txt 200 gtGdlsdvgaekgkyyavnvPl.kdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvk.sfnlpll 289 gtG ++vg+ +g+ ++vn+P + g+ D+ y f++v+ ++ + f ++ ++ G D+ gD+lg+ +++ +g++ + +++ s n ll GRMZM2G107309_P01 400 GTGAAHEVGVLDGQGFSVNIPWsRGGVGDDDYIFAFQTVVLPIASEFAADITIISAGFDAARGDPLGCCDVTPTGYSWMTSLLAgSSNGRLL 491 *********************83568****************************************************99988625699*** PP class-1.txt 290 vlGGGGYtlrnvaRcwty 307 v+ GGY+lr ++ t GRMZM2G107309_P01 492 VILEGGYNLRSISSSATE 509 **********99976665 PP
|
Protein Sequence (Fasta) | MRPPSSGKKT EVSHSVGKCG VSDQACHGKC QSCGIDAKPF CAGVNEVSLL TGSHTDVEAS 60 KENRGACSLN NDRADALEEE ANVSTARIGH VESADPGGSV GVEKEIFMAV NEESEGEQAG 120 ATLEDLFFFN GEEDDDSDWE PASRLVVNRW FCLNCTMPNV DKITYCMNCR ELPGSVVDGY 180 DVFKKQIAQT ALLSADTGLL PVSTAIGFDE RMLLHSELEV KPNPHPERPD RLRAIAASLA 240 AAGIFPSKCA LVPPREITKE ELLMVHSPDH IESVEQTKNM LYSYFTSDTY ANGHSACAAK 300 LAAGLCADLA SLIVSGRVRN GFALVRPPGH HAGVKQAMGF CLHNNAAVAA LAAKRAGAKK 360 VLIVDWDVHH GNGTQEIFDG DKTVLYISLH RHEDGNFYPG TGAAHEVGVL DGQGFSVNIP 420 WSRGGVGDDD YIFAFQTVVL PIASEFAADI TIISAGFDAA RGDPLGCCDV TPTGYSWMTS 480 LLAGSSNGRL LVILEGGYNL RSISSSATEV VKVLLGEGPN RASFVVSPSK EALSTVSQVL 540 KIQQQFWPVL GPTYASLQAQ QGSVSSNHSN ELKKRKRPGG GPGPFWWKMG SKRLLYEALI 600 EPRSRPRKLK GSTGSAAP 618Protein Fasta Sequence
>GRMZM2G107309_P01|Class-I|Zea mays MRPPSSGKKTEVSHSVGKCGVSDQACHGKCQSCGIDAKPFCAGVNEVSLLTGSHTDVEASKENRGACSLNNDRADALEEEANVSTARIGHVESADPGGSVGVEKEIFMAVNEESEGEQAGATLEDLFFFNGEEDDDSDWEPASRLVVNRWFCLNCTMPNVDKITYCMNCRELPGSVVDGYDVFKKQIAQTALLSADTGLLPVSTAIGFDERMLLHSELEVKPNPHPERPDRLRAIAASLAAAGIFPSKCALVPPREITKEELLMVHSPDHIESVEQTKNMLYSYFTSDTYANGHSACAAKLAAGLCADLASLIVSGRVRNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRAGAKKVLIVDWDVHHGNGTQEIFDGDKTVLYISLHRHEDGNFYPGTGAAHEVGVLDGQGFSVNIPWSRGGVGDDDYIFAFQTVVLPIASEFAADITIISAGFDAARGDPLGCCDVTPTGYSWMTSLLAGSSNGRLLVILEGGYNLRSISSSATEVVKVLLGEGPNRASFVVSPSKEALSTVSQVLKIQQQFWPVLGPTYASLQAQQGSVSSNHSNELKKRKRPGGGPGPFWWKMGSKRLLYEALIEPRSRPRKLKGSTGSAAP
|
Nucleotide Sequence (Fasta) | GGACAGAGCC GCCCGGTCGC CCTTTCTTCA TCTCCCATCT TAATTTCCTC GCAGCGCCGG 60 CGCTCATCTT CCGCTTTCTC CCTTACTCGC GCTCAGCACG CAGGCGACGG CGTCGGCGCT 120 CAGGTCGGGC TCTGGGCGAC GGCGTCATCG GCTTCTCCTC CCGCCTCTCT CCAGTCGCCT 180 CGCGCCCTCG CCTCCGGTCC TCCGCACACC GGCCGGTGAC CCTGCGTGCG TGCCTCTCTC 240 TCTCTCTCCC CCTTCCCGCC TCCGGTGGAT CGTCAACGCC GCCCGGCCCG GGTGGCAGCA 300 CCGCGCGCGA CCTGAGGGGT GAGGGCAGCG GGAGCCAGCA GCCGCTGCTC CACCAAGGCG 360 GTCGCGCCGC TTTTGGAGCG CTTATGCCCC CCGGTCCGCT GAGCGCTTAG TGCAGTTTTT 420 TTGGAACATG AGACCTCCTA GCAGTGGCAA AAAGACTGAG GTCTCCCATA GCGTGGGGAA 480 ATGTGGGGTT TCTGATCAAG CTTGTCATGG CAAATGCCAA AGCTGTGGCA TTGATGCAAA 540 ACCTTTTTGT GCTGGAGTGA ACGAAGTCTC CTTGTTGACT GGCAGTCACA CTGATGTGGA 600 GGCCTCAAAA GAGAACCGTG GAGCATGCAG TTTGAACAAT GATCGTGCTG ATGCTCTAGA 660 AGAAGAGGCC AATGTTTCCA CAGCTAGGAT AGGTCATGTT GAGAGTGCTG ACCCTGGTGG 720 CTCTGTGGGT GTAGAAAAGG AAATTTTCAT GGCTGTTAAT GAGGAGTCTG AGGGGGAGCA 780 AGCTGGGGCA ACACTGGAGG ATCTGTTTTT CTTTAATGGT GAAGAGGATG ATGACAGTGA 840 TTGGGAACCT GCTAGTCGCC TTGTTGTGAA TAGATGGTTT TGCTTGAACT GCACAATGCC 900 AAATGTGGAC AAGATTACAT ATTGCATGAA TTGCCGTGAG CTTCCAGGAT CTGTTGTAGA 960 TGGATATGAT GTCTTCAAAA AGCAAATTGC ACAAACAGCT TTGTTATCTG CTGACACAGG 1020 GTTGCTGCCA GTGTCTACGG CGATTGGTTT TGATGAAAGA ATGCTGCTCC ACAGTGAGCT 1080 AGAAGTTAAA CCAAATCCAC ATCCAGAAAG ACCGGATCGC CTTCGCGCCA TTGCTGCAAG 1140 TCTTGCTGCT GCAGGGATCT TTCCCTCAAA ATGTGCTTTG GTACCTCCTC GAGAAATCAC 1200 GAAGGAGGAA CTTCTTATGG TTCATAGTCC AGACCACATT GAAAGTGTCG AGCAGACAAA 1260 GAACATGCTT TACAGTTACT TCACTTCGGA TACTTACGCA AATGGACATT CAGCATGTGC 1320 TGCCAAACTT GCAGCTGGAT TATGTGCTGA TCTTGCTAGT TTGATAGTAT CTGGGCGTGT 1380 TCGCAATGGC TTTGCGCTGG TAAGACCTCC TGGGCATCAT GCAGGGGTGA AGCAAGCAAT 1440 GGGGTTTTGT CTTCACAACA ATGCAGCAGT AGCTGCGTTA GCTGCAAAAA GAGCAGGTGC 1500 CAAGAAAGTC CTCATAGTTG ACTGGGATGT GCACCATGGA AATGGCACAC AAGAGATATT 1560 CGACGGGGAC AAAACAGTCT TGTACATATC ATTACATCGT CATGAGGATG GAAACTTTTA 1620 CCCTGGAACT GGAGCTGCTC ATGAGGTGGG AGTTCTTGAT GGTCAAGGAT TCTCAGTTAA 1680 TATACCTTGG AGCCGTGGTG GTGTTGGAGA TGATGACTAC ATCTTTGCTT TTCAGACTGT 1740 GGTGCTTCCA ATAGCTTCAG AGTTTGCCGC AGACATCACT ATAATATCTG CAGGATTCGA 1800 TGCAGCTAGA GGTGACCCTC TGGGTTGTTG TGACGTCACT CCAACTGGAT ACTCTTGGAT 1860 GACATCCCTG CTAGCTGGTT CCTCAAATGG AAGATTGTTG GTGATACTTG AGGGAGGATA 1920 CAATCTCCGG TCGATATCCT CATCAGCTAC TGAAGTTGTT AAGGTCCTAC TTGGGGAGGG 1980 TCCCAATCGT GCTTCATTTG TAGTTTCACC ATCAAAAGAG GCCTTGAGTA CTGTTTCTCA 2040 AGTCCTGAAG ATTCAACAAC AGTTTTGGCC AGTTTTAGGT CCAACATACG CATCACTACA 2100 GGCGCAGCAG GGGTCGGTTT CTTCCAATCA TAGTAATGAG CTGAAGAAAA GGAAGCGTCC 2160 AGGAGGAGGA CCAGGGCCCT TCTGGTGGAA GATGGGAAGC AAAAGGCTTC TATACGAAGC 2220 GCTTATTGAG CCTCGCAGCC GTCCGAGGAA ACTCAAGGGG TCAACTGGTT CAGCAGCGCC 2280 TTAGACTTAG ATGGGCAGTT TGCTGGCCGT TGATCTTCTA GACATGAACA GGGTAGCTCG 2340 CTGACCGCGT TTCCTCAAGC AGAGTAGGCT GCGTTTACCT AGAAAACCTA GTTTTGGCTG 2400 GTTACTTGCA TGATGGTCGA CCGTTTCAGA TGGAGTTTGA CAGCAAACCC GTTGTGTTAA 2460 CCATGCGTGG CGTATCAGCC GATGTTTCAT GCATGCTACT GTCTTTTTCT TTGGTTGGTT 2520 TCGTACCATA GATAGACGTG TGTAGCGACC ATCGATGGAA AAAAACCTTG CACATCTGGA 2580 ACGGCATGCA TCTCAGTTAT TAGCCCCTGC TGTTGCACAT GCATTTTTTT TTTGCGGATT 2640 TTCTGTGCGA CTTGACTGCG ACGTCTGATG TGCATTTGTT ACACATCAGA
2691Nucleotide Fasta Sequence
>GRMZM2G107309_P01|Class-I|Zea mays GGACAGAGCCGCCCGGTCGCCCTTTCTTCATCTCCCATCTTAATTTCCTCGCAGCGCCGGCGCTCATCTTCCGCTTTCTCCCTTACTCGCGCTCAGCACGCAGGCGACGGCGTCGGCGCTCAGGTCGGGCTCTGGGCGACGGCGTCATCGGCTTCTCCTCCCGCCTCTCTCCAGTCGCCTCGCGCCCTCGCCTCCGGTCCTCCGCACACCGGCCGGTGACCCTGCGTGCGTGCCTCTCTCTCTCTCTCCCCCTTCCCGCCTCCGGTGGATCGTCAACGCCGCCCGGCCCGGGTGGCAGCACCGCGCGCGACCTGAGGGGTGAGGGCAGCGGGAGCCAGCAGCCGCTGCTCCACCAAGGCGGTCGCGCCGCTTTTGGAGCGCTTATGCCCCCCGGTCCGCTGAGCGCTTAGTGCAGTTTTTTTGGAACATGAGACCTCCTAGCAGTGGCAAAAAGACTGAGGTCTCCCATAGCGTGGGGAAATGTGGGGTTTCTGATCAAGCTTGTCATGGCAAATGCCAAAGCTGTGGCATTGATGCAAAACCTTTTTGTGCTGGAGTGAACGAAGTCTCCTTGTTGACTGGCAGTCACACTGATGTGGAGGCCTCAAAAGAGAACCGTGGAGCATGCAGTTTGAACAATGATCGTGCTGATGCTCTAGAAGAAGAGGCCAATGTTTCCACAGCTAGGATAGGTCATGTTGAGAGTGCTGACCCTGGTGGCTCTGTGGGTGTAGAAAAGGAAATTTTCATGGCTGTTAATGAGGAGTCTGAGGGGGAGCAAGCTGGGGCAACACTGGAGGATCTGTTTTTCTTTAATGGTGAAGAGGATGATGACAGTGATTGGGAACCTGCTAGTCGCCTTGTTGTGAATAGATGGTTTTGCTTGAACTGCACAATGCCAAATGTGGACAAGATTACATATTGCATGAATTGCCGTGAGCTTCCAGGATCTGTTGTAGATGGATATGATGTCTTCAAAAAGCAAATTGCACAAACAGCTTTGTTATCTGCTGACACAGGGTTGCTGCCAGTGTCTACGGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAGCTAGAAGTTAAACCAAATCCACATCCAGAAAGACCGGATCGCCTTCGCGCCATTGCTGCAAGTCTTGCTGCTGCAGGGATCTTTCCCTCAAAATGTGCTTTGGTACCTCCTCGAGAAATCACGAAGGAGGAACTTCTTATGGTTCATAGTCCAGACCACATTGAAAGTGTCGAGCAGACAAAGAACATGCTTTACAGTTACTTCACTTCGGATACTTACGCAAATGGACATTCAGCATGTGCTGCCAAACTTGCAGCTGGATTATGTGCTGATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGGTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGGTTTTGTCTTCACAACAATGCAGCAGTAGCTGCGTTAGCTGCAAAAAGAGCAGGTGCCAAGAAAGTCCTCATAGTTGACTGGGATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGAACTGGAGCTGCTCATGAGGTGGGAGTTCTTGATGGTCAAGGATTCTCAGTTAATATACCTTGGAGCCGTGGTGGTGTTGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGCTTCCAATAGCTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAGGATTCGATGCAGCTAGAGGTGACCCTCTGGGTTGTTGTGACGTCACTCCAACTGGATACTCTTGGATGACATCCCTGCTAGCTGGTTCCTCAAATGGAAGATTGTTGGTGATACTTGAGGGAGGATACAATCTCCGGTCGATATCCTCATCAGCTACTGAAGTTGTTAAGGTCCTACTTGGGGAGGGTCCCAATCGTGCTTCATTTGTAGTTTCACCATCAAAAGAGGCCTTGAGTACTGTTTCTCAAGTCCTGAAGATTCAACAACAGTTTTGGCCAGTTTTAGGTCCAACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCTGGTGGAAGATGGGAAGCAAAAGGCTTCTATACGAAGCGCTTATTGAGCCTCGCAGCCGTCCGAGGAAACTCAAGGGGTCAACTGGTTCAGCAGCGCCTTAGACTTAGATGGGCAGTTTGCTGGCCGTTGATCTTCTAGACATGAACAGGGTAGCTCGCTGACCGCGTTTCCTCAAGCAGAGTAGGCTGCGTTTACCTAGAAAACCTAGTTTTGGCTGGTTACTTGCATGATGGTCGACCGTTTCAGATGGAGTTTGACAGCAAACCCGTTGTGTTAACCATGCGTGGCGTATCAGCCGATGTTTCATGCATGCTACTGTCTTTTTCTTTGGTTGGTTTCGTACCATAGATAGACGTGTGTAGCGACCATCGATGGAAAAAAACCTTGCACATCTGGAACGGCATGCATCTCAGTTATTAGCCCCTGCTGTTGCACATGCATTTTTTTTTTGCGGATTTTCTGTGCGACTTGACTGCGACGTCTGATGTGCATTTGTTACACATCAGA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |