WERAM Information


Tag Content
WERAM ID WERAM-Gam-0130
Ensembl Protein ID ENSGMOP00000013657.1
Gene Name hdac4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSGMOG00000012763.1 ENSGMOT00000014018.1 ENSGMOP00000013657.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 1.10e-108 363.4 52 892
HDAC Class-I 5.50e-20 72.3 572 773
Organism Gadus morhua
Domain Profile
  HDAC Class-II

           class-2.txt 54 atkeelqlvHseehvelletae.klekeelesltvdsdsiyl 94
+++e l+l H++e++e+ ++ e + ++e+e+++ ++ + l
ENSGMOP00000013657.1 52 QQQELLALKHQQELLEHQRKMEsHRMEQEMEKQQREQKLLLL 93
455666777888888888777766667777765555444433 PP
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeeles...... 84
+glvyd+ m khq++++n+++hpE+++Riq+i+srlqe+gl+ ++e++++rka++eelq+vHse+hv l++t+ +k + ++
ENSGMOP00000013657.1 554 TGLVYDSLMQKHQCMCGNTNSHPEHAGRIQSIWSRLQETGLRAQCECIRGRKASLEELQTVHSEAHVLLYGTNPLRQKLDCKRsvtpmf 642
79***********************************************************************544444444489**** PP
class-2.txt 85 .......ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkil 166
++vdsd+i++e++s++aarlavG+v+elv kv++gelkngfavvRPPGHHaeest+mGFC+fn+va+aa+llqq+l+v++il
ENSGMOP00000013657.1 643 vrlpcggVGVDSDTIWNEVHSSSAARLAVGSVVELVLKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAARLLQQRLSVNRIL 731
***************************************************************************************** PP
class-2.txt 167 ivDwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavde 212
ivDwDvHhGnGtq++fy+dp+vlylS+HRyd+g+ffp gsga+de
ENSGMOP00000013657.1 732 IVDWDVHHGNGTQQAFYDDPNVLYLSIHRYDDGNFFP--GSGAPDE 775
*************************************..9999987 PP
class-2.txt 279 kcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
+++lt+ql++laggrvvl+lEGG++l+ai++a+ea+v aLlg
ENSGMOP00000013657.1 849 XXFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVAALLG 892
579***************************************96 PP

  HDAC Class-I

           class-1.txt  17 gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenae....elskelkkf...nvgedc.Pvfdg 97 
+++hp r++ + + + + gl + e ++ +kas eel+++hse+++ + + ++ +++ + + +vg d+ + ++
ENSGMOP00000013657.1 572 TNSHPEHAGRIQSIWSRLQETGLRAQCECIRGRKASLEELQTVHSEAHVLLYGTNPLRQKLdckrSVTPMFVRLpcgGVGVDSdTIWNE 660
568899999999999999999************************99986554333333222222333333333222566665236677 PP
class-1.txt 98 lfey..cqlitGasleaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgveeafy 180
+++ ++l G+ +e + k+ ++e + a+ G hha s Gfcy n + +a l++ + +r+l +d d+hhG+g ++afy
ENSGMOP00000013657.1 661 VHSSsaARLAVGSVVELVLKVATGELKngFAVVRPPG-HHAEESTPMGFCYFNSVAIAARLLQQrlSVNRILIVDWDVHHGNGTQQAFY 748
7654114567888899999999887661255555555.*******************987776645789******************** PP
class-1.txt 181 ttdrvmtvsfhkyge.effPgtGdl 204
v+ +s+h+y++ +ffPg+G
ENSGMOP00000013657.1 749 DDPNVLYLSIHRYDDgNFFPGSGAP 773
*************9746*****975 PP

Protein Sequence
(Fasta)
LSLSLSLSLV DINSALPLRL PPAAIPMDLR VGLPCPPWAS SPLGLPCLLP QQQQELLALK 60
HQQELLEHQR KMESHRMEQE MEKQQREQKL LLLKNKERGQ ESAVASTEVK MRLQEFVLNK 120
KKALAQRSIN QGGIPNDAPY WYRKTQHSSL DQSSPPQTGL SPYNHPVLGV YNPRDDFPLR 180
KTASEPNLKL RSRLKQKVSE RRSSPLLRRR DSPITAAKKR SLDMADSVCS SAPGSGPSSP 240
NNNSSSNIPN ENGIAVCSSA EVSLAQRLSS SSADGGSLSQ LSLYCSPSLP NITLGLPATS 300
TPSPAANXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 360
XXXXXXXGLS IPSAAASMSK LQRQHRPLGR TQSAPLPQGS ATPPHAQVLA LQQLHLNKMM 420
GKPCEAGVVR QHQSHPEETE EELREQQDTE GGALPAGVSV KQEPPDPQEL LEEGPWDMER 480
QSDHELLFRQ ALLLEQQRIH QLRNYQASME AAGLSITFPG HRPLSRAQSS PASAPSFPLS 540
VAPPDPPAKT HFTTGLVYDS LMQKHQCMCG NTNSHPEHAG RIQSIWSRLQ ETGLRAQCEC 600
IRGRKASLEE LQTVHSEAHV LLYGTNPLRQ KLDCKRSVTP MFVRLPCGGV GVDSDTIWNE 660
VHSSSAARLA VGSVVELVLK VATGELKNGF AVVRPPGHHA EESTPMGFCY FNSVAIAARL 720
LQQRLSVNRI LIVDWDVHHG NGTQQAFYDD PNVLYLSIHR YDDGNFFPGS GAPDEXXXXX 780
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 840
XXXXXXXXXX FGHLTRQLMT LAGGRVVLAL EGGHDLTAIC DASEACVAAL LGQELDPLPK 900
AVLEQRPNPN AVRSLGKVIE VHSKYWRAVQ RCNQLGLSLL EAKRGDSEEA ETVHAMASLS 960
VANSNAMEHR QQEEPMEEGE PL 982
Nucleotide Sequence
(Fasta)
CTCTCTCTCT CTCTCTCTCT CTCTCTAGTG GACATCAACT CCGCCCTTCC GCTGCGTCTC 60
CCTCCGGCTG CCATCCCCAT GGACCTCCGG GTGGGTCTCC CATGTCCCCC CTGGGCCAGC 120
AGCCCCCTGG GCCTCCCATG TCTCCTTCCG CAGCAGCAGC AGGAGCTGCT GGCCTTGAAG 180
CACCAGCAGG AGCTGCTTGA GCACCAGAGG AAGATGGAGA GCCACCGGAT GGAGCAGGAG 240
ATGGAGAAGC AGCAGCGGGA GCAGAAGCTG CTGCTGCTGA AGAACAAGGA GCGGGGACAA 300
GAGAGTGCGG TGGCAAGCAC AGAGGTGAAG ATGCGTCTGC AGGAGTTCGT CCTGAACAAG 360
AAGAAAGCAC TGGCCCAGCG CAGCATCAAC CAGGGAGGAA TCCCCAACGA CGCCCCCTAC 420
TGGTACCGGA AAACCCAGCA CAGTTCTCTG GATCAGAGCT CGCCCCCCCA GACGGGCCTG 480
TCCCCCTACA ACCACCCCGT CCTGGGGGTG TACAACCCCC GAGACGACTT CCCCCTGCGC 540
AAGACCGCGT CGGAGCCCAA CCTGAAGCTG CGCTCCAGGC TGAAGCAGAA GGTGAGTGAG 600
AGGCGGAGCA GCCCACTCCT ACGGCGCCGC GACAGCCCCA TCACCGCCGC CAAGAAACGC 660
TCGCTGGATA TGGCAGACTC TGTTTGTAGC AGTGCTCCCG GCTCTGGCCC CAGCTCCCCG 720
AACAACAACA GCTCCTCTAA TATCCCCAAC GAGAACGGCA TCGCTGTGTG CTCCAGCGCC 780
GAGGTGTCCT TGGCCCAGCG GCTGAGCAGC AGCAGTGCGG ACGGGGGCTC CCTCAGCCAG 840
CTGTCCCTAT ACTGCTCCCC CTCCCTGCCT AACATCACCC TGGGCCTGCC CGCCACCTCC 900
ACGCCCAGCC CTGCCGCCAA CNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 960
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1020
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1080
NNNNNNNNNN NNNNNNNNNN NGGACTCTCC ATCCCGTCGG CGGCAGCCTC GATGTCTAAG 1140
CTCCAGCGGC AGCACCGGCC CCTGGGGCGG ACCCAGTCGG CGCCCCTGCC CCAGGGCAGC 1200
GCCACGCCCC CCCACGCCCA GGTGCTGGCC CTGCAGCAGC TGCACCTCAA CAAGATGATG 1260
GGTAAGCCGT GCGAGGCGGG CGTGGTCCGG CAGCACCAGA GCCACCCAGA GGAGACGGAG 1320
GAGGAGCTGA GGGAGCAGCA GGACACCGAG GGGGGAGCCC TCCCCGCCGG GGTCAGCGTC 1380
AAACAGGAGC CCCCCGACCC CCAGGAGCTC TTGGAGGAGG GGCCCTGGGA CATGGAGAGG 1440
CAGTCGGACC ATGAGCTGCT CTTCAGACAG GCCCTCCTAT TGGAGCAGCA GAGGATTCAC 1500
CAGCTGAGGA ACTACCAGGC GTCCATGGAG GCTGCCGGCC TGTCAATCAC CTTCCCCGGG 1560
CACCGCCCCC TCTCCCGCGC CCAATCATCT CCTGCCTCCG CCCCCTCCTT CCCCCTCAGT 1620
GTCGCGCCCC CCGACCCGCC CGCCAAAACT CACTTCACTA CAGGCCTGGT GTACGACTCC 1680
CTGATGCAGA AGCACCAATG CATGTGTGGG AACACCAACA GCCACCCGGA GCACGCCGGG 1740
CGCATCCAGA GCATCTGGTC GCGACTGCAG GAGACGGGGC TGCGGGCGCA GTGTGAGTGT 1800
ATCCGGGGGA GGAAGGCTAG TTTGGAGGAG CTCCAGACTG TCCACTCTGA AGCGCACGTC 1860
CTGCTGTACG GAACCAACCC TCTACGGCAG AAACTGGACT GTAAGCGCTC TGTCACGCCC 1920
ATGTTCGTCA GGCTGCCCTG CGGAGGAGTG GGGGTGGACA GTGACACCAT ATGGAATGAG 1980
GTGCACTCAT CCAGCGCGGC ACGGCTAGCG GTCGGCTCTG TGGTGGAACT GGTGCTGAAG 2040
GTGGCCACCG GGGAGCTGAA GAACGGCTTC GCCGTTGTCC GACCTCCCGG ACATCACGCC 2100
GAGGAGAGCA CTCCCATGGG ATTCTGTTAT TTCAACTCAG TGGCGATCGC TGCAAGGCTG 2160
CTGCAGCAGC GACTCAGCGT CAACAGAATC CTCATCGTGG ACTGGGACGT TCACCATGGC 2220
AACGGCACCC AGCAGGCATT CTACGACGAC CCCAACGTCC TCTACCTGTC CATCCATCGC 2280
TATGACGACG GGAACTTCTT CCCCGGCAGC GGAGCACCCG ATGAGNNNNN NNNNNNNNNN 2340
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 2400
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 2460
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 2520
NNNNNNNNNN NNNNNNNNNN NNNNNNNNGT TTCGGTCACC TGACCCGTCA GCTGATGACC 2580
CTCGCCGGGG GGAGGGTGGT TCTGGCGTTG GAGGGGGGTC ACGACCTCAC CGCAATCTGT 2640
GACGCTTCGG AGGCTTGTGT GGCTGCCCTG CTGGGCCAGG AGCTGGATCC GCTGCCCAAG 2700
GCGGTCCTGG AGCAGCGGCC CAACCCCAAC GCCGTCCGAT CCCTGGGGAA GGTCATCGAG 2760
GTGCACAGTA AGTACTGGCG TGCTGTGCAG CGCTGCAACC AGCTGGGTCT CTCCCTGCTG 2820
GAGGCCAAGC GAGGCGACTC GGAGGAGGCA GAGACCGTCC ACGCCATGGC CTCGCTCTCT 2880
GTTGCCAATA GCAACGCTAT GGAGCACAGG CAACAGGAGG AACCAATGGA AGAGGGGGAA 2940
CCACTGTAG
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Gaa-0148 ENSGACP00000019223.1 Gasterosteus aculeatus 89 7e-175 612
WERAM-Pof-0042 ENSPFOP00000003781.2 Poecilia formosa 82 2e-168 590
WERAM-Orn-0012 ENSONIP00000001222.1 Oreochromis niloticus 80 6e-168 589
WERAM-Ten-0099 ENSTNIP00000000138.1 Tetraodon nigroviridis 81 4e-167 586
WERAM-Tar-0171 ENSTRUP00000035900.1 Takifugu rubripes 81 1e-166 584
WERAM-Xim-0085 ENSXMAP00000008038.1 Xiphophorus maculatus 79 5e-165 579
WERAM-Dar-0198 ENSDARP00000131327.1 Danio rerio 73 4e-156 550
WERAM-Leo-0082 ENSLOCP00000011105.1 Lepisosteus oculatus 70 1e-152 538
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 70 8e-148 522
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 69 2e-147 521
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 69 4e-147 520
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 69 5e-147 519
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 69 1e-146 518
WERAM-Anc-0099 ENSACAP00000009498.3 Anolis carolinensis 68 3e-146 516
WERAM-Lac-0062 ENSLACP00000008432.1 Latimeria chalumnae 70 2e-145 514
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 70 2e-145 514
WERAM-Myl-0159 ENSMLUP00000013297.2 Myotis lucifugus 71 9e-144 508
WERAM-Bot-0159 ENSBTAP00000023621.5 Bos taurus 71 2e-143 508
WERAM-Asm-0202 ENSAMXP00000018862.1 Astyanax mexicanus 84 4e-143 506
WERAM-Caf-0133 ENSCAFP00000018541.3 Canis familiaris 71 6e-143 506
WERAM-Fec-0140 ENSFCAP00000013207.3 Felis catus 70 1e-142 504
WERAM-Ict-0095 ENSSTOP00000009983.2 Ictidomys tridecemlineatus 70 2e-142 504
WERAM-Pes-0174 ENSPSIP00000020522.1 Pelodiscus sinensis 67 2e-142 504
WERAM-Hos-0025 ENSP00000264606.3 Homo sapiens 70 2e-142 504
WERAM-Pat-0104 ENSPTRP00000022412.3 Pan troglodytes 70 4e-142 503
WERAM-Chs-0068 ENSCSAP00000002314.1 Chlorocebus sabaeus 70 4e-142 503
WERAM-Mup-0001 ENSMPUP00000000123.1 Mustela putorius furo 71 6e-142 503
WERAM-Loa-0107 ENSLAFP00000009167.2 Loxodonta africana 70 6e-142 502
WERAM-Aim-0131 ENSAMEP00000011965.1 Ailuropoda melanoleuca 70 7e-142 502
WERAM-Ran-0135 ENSRNOP00000027622.5 Rattus norvegicus 71 8e-142 502
WERAM-Mum-0077 ENSMUSP00000008995.8 Mus musculus 71 4e-141 499
WERAM-Paa-0012 ENSPANP00000003104.1 Papio anubis 70 7e-141 499
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 69 1e-140 498
WERAM-Otg-0061 ENSOGAP00000004404.2 Otolemur garnettii 70 7e-140 495
WERAM-Cap-0143 ENSCPOP00000011770.2 Cavia porcellus 83 1e-139 495
WERAM-Sus-0169 ENSSSCP00000025173.1 Sus scrofa 70 3e-139 494
WERAM-Gog-0157 ENSGGOP00000013985.2 Gorilla gorilla 68 3e-139 494
WERAM-Caj-0101 ENSCJAP00000017313.2 Callithrix jacchus 70 3e-139 493
WERAM-Ova-0200 ENSOARP00000020106.1 Ovis aries 82 2e-133 474
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 81 1e-128 458
WERAM-Mae-0089 ENSMEUP00000008883.1 Macropus eugenii 78 6e-128 456
WERAM-Dan-0037 ENSDNOP00000003826.3 Dasypus novemcinctus 67 4e-125 446
WERAM-Mam-0041 ENSMMUP00000007984.2 Macaca mulatta 65 7e-125 446
WERAM-Tas-0071 ENSTSYP00000007103.1 Tarsius syrichta 65 8e-122 436
WERAM-Tut-0038 ENSTTRP00000002947.1 Tursiops truncatus 71 1e-119 428
WERAM-Poa-0116 ENSPPYP00000014905.2 Pongo abelii 63 9e-113 405
WERAM-Ptv-0156 ENSPVAP00000012934.1 Pteropus vampyrus 74 4e-109 393
WERAM-Mim-0022 ENSMICP00000002393.1 Microcebus murinus 74 8e-108 389
WERAM-Orc-0081 ENSOCUP00000007421.3 Oryctolagus cuniculus 74 9e-108 389
WERAM-Dio-0163 ENSDORP00000015416.1 Dipodomys ordii 74 1e-107 389
WERAM-Prc-0092 ENSPCAP00000008303.1 Procavia capensis 74 1e-107 388
WERAM-Ocp-0087 ENSOPRP00000007869.2 Ochotona princeps 74 2e-107 388
WERAM-Sah-0166 ENSSHAP00000017733.1 Sarcophilus harrisii 75 3e-107 387
WERAM-Eqc-0174 ENSECAP00000019543.1 Equus caballus 74 4e-107 387
WERAM-Mod-0095 ENSMODP00000032765.2 Monodelphis domestica 74 6e-107 386
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 67 7e-107 386
WERAM-Nol-0194 ENSNLEP00000021748.1 Nomascus leucogenys 74 9e-102 369
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 73 9e-98 355
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 69 7e-97 352
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 64 2e-88 325
WERAM-Chh-0086 ENSCHOP00000009630.1 Choloepus hoffmanni 64 4e-83 307
WERAM-Ect-0068 ENSETEP00000007698.1 Echinops telfairi 64 3e-82 304
WERAM-Vip-0084 ENSVPAP00000007862.1 Vicugna pacos 73 1e-75 282
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 54 1e-72 272
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 52 4e-71 267
WERAM-Tub-0129 ENSTBEP00000014362.1 Tupaia belangeri 54 2e-65 248
WERAM-Brr-0181 Bra035942.1-P Brassica rapa 46 4e-50 197
WERAM-Bro-0168 Bo9g014470.1 Brassica oleracea 46 1e-49 196
WERAM-Sem-0010 EFJ19764 Selaginella moellendorffii 46 3e-47 188
WERAM-Viv-0107 VIT_17s0000g07280.t01 Vitis vinifera 43 9e-47 186
WERAM-Sol-0055 Solyc03g115150.2.1 Solanum lycopersicum 42 2e-46 185
WERAM-Orp-0076 OPUNC07G19850.1 Oryza punctata 43 2e-46 185
WERAM-Thc-0031 EOY22062 Theobroma cacao 44 2e-46 185
WERAM-Mua-0066 GSMUA_Achr4P03250_001 Musa acuminata 44 3e-46 184
WERAM-Art-0146 AT5G61060.1 Arabidopsis thaliana 46 3e-46 184
WERAM-Lep-0079 LPERR07G18450.1 Leersia perrieri 43 3e-46 184
WERAM-Arl-0149 scaffold_802745.1 Arabidopsis lyrata 45 5e-46 184
WERAM-Php-0085 PP1S34_252V6.1 Physcomitrella patens 43 1e-45 182
WERAM-Zem-0143 GRMZM2G457889_P01 Zea mays 42 2e-45 182
WERAM-Tru-0053 TRIUR3_22556-P1 Triticum urartu 44 2e-45 182
WERAM-Orbr-0087 OB07G26850.1 Oryza brachyantha 43 2e-45 182
WERAM-Sob-0036 Sb02g038550.1 Sorghum bicolor 43 3e-45 181
WERAM-Glm-0045 GLYMA05G00460.1 Glycine max 45 4e-45 181
WERAM-Prp-0049 EMJ12067 Prunus persica 42 6e-45 180
WERAM-Ors-0072 OS07T0602200-01 Oryza sativa 42 7e-45 180
WERAM-Orr-0082 ORUFI07G22240.1 Oryza rufipogon 42 7e-45 180
WERAM-Orgl-0076 OGLUM07G21150.1 Oryza glumaepatula 42 7e-45 180
WERAM-Sei-0109 Si029091m Setaria italica 43 8e-45 180
WERAM-Tra-0016 Traes_1BL_9084A78D6.1 Triticum aestivum 43 8e-45 180
WERAM-Ori-0088 BGIOSGA026083-PA Oryza indica 42 8e-45 180
Created Date 25-Jun-2016