WERAM Information


Tag Content
WERAM ID WERAM-Asm-0202
Ensembl Protein ID ENSAMXP00000018862.1
Gene Name hdac4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSAMXG00000018271.1 ENSAMXT00000018862.1 ENSAMXP00000018862.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 2.60e-148 493.7 9 876
HDAC Class-I 7.70e-28 98.2 551 842
Organism Astyanax mexicanus
Domain Profile
  HDAC Class-II

           class-2.txt 62 vHseehvelletae.klekeelesltvd 88
H++e++e+ ++ e + +++ele+++ +
ENSAMXP00000018862.1 9 KHQQELLEHQRKLErHRREQELEKQQRE 36
3444444433333333333333331111 PP
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeeles...... 84
+glvyd+ m khq++++n+++hpE+++Riq+i+srlqe+gl++k+e++++rkat+eelq+vHse+hv l++t+ +k l+
ENSAMXP00000018862.1 532 TGLVYDTLMQKHQCMCGNTNTHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHVMLYGTNPLRQK--LDIsilkgn 618
79***********************************************************************54444..4444599** PP
class-2.txt 85 ..............ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeesta...mGFClfnnvavaakll 156
++vdsd+i++e++s++aarlavG+v+elv+kv++gelkngfavvRPPGHHaeest+ GFC+fn+va+aakll
ENSAMXP00000018862.1 619 ssvtpmfvrlpcggIGVDSDTIWNEVHSSSAARLAVGSVVELVFKVASGELKNGFAVVRPPGHHAEESTPinnRGFCYFNSVAIAAKLL 707
********************************************************************974446*************** PP
class-2.txt 157 qqklkvkkilivDwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawnggl...mgdaeylaafr 242
qq+l+v+kilivDwDvHhGnGtq++fy+dp++lylSlHRyd+g+ffp gsga+devg+g+g+gfnvN+a++ggl mgdaeylaafr
ENSAMXP00000018862.1 708 QQRLNVSKILIVDWDVHHGNGTQQAFYSDPNILYLSLHRYDDGNFFP--GSGAPDEVGSGPGLGFNVNMAFTGGLeppMGDAEYLAAFR 794
***********************************************..**************************************** PP
class-2.txt 243 evvlpiakeFkPdlvlvsaGfDaaeg..dplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
+vv+pia+eF+Pd+vlvs+GfDa+eg +plgg+++takc+++ltkql++laggr+vl+lEGG++l+ai++a+ea+v+aLlg
ENSAMXP00000018862.1 795 TVVMPIANEFAPDVVLVSSGFDAVEGhaSPLGGYRLTAKCFGYLTKQLMGLAGGRLVLALEGGHDLTAICDASEACVSALLG 876
**************************999***************************************************96 PP

  HDAC Class-I

           class-1.txt  18 qkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenae..........elskelkkf...nvgedc. 92 
++hp r++ + + + + gl k e ++ +ka+ eel+++hse+++ + + p ++ +++ + + ++g d+
ENSAMXP00000018862.1 551 NTHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHVMLYGTN-PLRQKldisilkgnsSVTPMFVRLpcgGIGVDSd 638
566777777777777777778888888888888888888888887777543322.2222222344433332222222222223444441 PP
class-1.txt 93 Pvfdglfey..cqlitGasleaakkLnkkead..iainwaGGlhhakks...easGfcyvnDivlailellk..khkrvlyididlhhG 172
+ +++++ ++l G+ +e + k+ ++e + a+ G hha s + Gfcy n + +a l++ + +++l +d d+hhG
ENSAMXP00000018862.1 639 TIWNEVHSSsaARLAVGSVVELVFKVASGELKngFAVVRPPG-HHAEEStpiNNRGFCYFNSVAIAAKLLQQrlNVSKILIVDWDVHHG 726
355555543114556777778888888776551255555555.888876233578**********988777644678************ PP
class-1.txt 173 Dgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlkdgid....DesyekifksviskvieafePeavvlqcGa 256
+g ++afy ++ +s+h+y++ +ffPg+G ++vg + g + vn+ ++ g++ D +y + f++v+ ++ + f P++v++ G
ENSAMXP00000018862.1 727 NGTQQAFYSDPNILYLSLHRYDDgNFFPGSGAPDEVGSGPGLGFNVNMAFTGGLEppmgDAEYLAAFRTVVMPIANEFAPDVVLVSSGF 815
*********************9746***********************98888644444****************************** PP
class-1.txt 257 Dslag..Drlgefnlsikghaecvkfv 281
D++ g +lg + l+ k ++ k +
ENSAMXP00000018862.1 816 DAVEGhaSPLGGYRLTAKCFGYLTKQL 842
***872258*******99998766655 PP

Protein Sequence
(Fasta)
HQQELLALKH QQELLEHQRK LERHRREQEL EKQQREQKLH QLKNKERGQE SAVASTEVKM 60
RLQEFVLNKK KALVQRSLNH CMPSDPRYWY GKTQHSSLDQ SSPPQTGIST YNHPVLGLYD 120
SKDDFPLRKT ASEPNLKLRS RLKQKVTERR SSPLLRRREG PITTAKKRSL DMAESACNSA 180
PGSGPSSPNN SSNNITNENG IAGSISNSPV EVQQLSTHSI ILHNIQLCHL SLYTSPSLPN 240
ITLGLPAPSS SSVASGQQEG ERLAMANLQP GLPLTTPFIP GAHLPTYLAA SALEREGGSA 300
HNPLLQHMVS QNPLVSGLGN LPLQPPSIHK LRQHRPLGRT QSAPLPQNAQ ALQQLVVQQQ 360
HQQFLEKHKQ QFQQQQLHMS KIVPTATQVC KYLHTHSLFR PSKEELPIKQ VSLDQKNAIK 420
SSQLCSKKVE RLFMTVETVT PVKGVALPLS SSPQLSSSDQ LHSEMSLCVN QALLLEQQRI 480
HQLRNYQASM EAAGLSVTFP GHRPLSRAQS SPASATFPIV VQEPPTKPRF TTGLVYDTLM 540
QKHQCMCGNT NTHPEHAGRI QSIWSRLQET GLRGKCECIR GRKATLEELQ TVHSEAHVML 600
YGTNPLRQKL DISILKGNSS VTPMFVRLPC GGIGVDSDTI WNEVHSSSAA RLAVGSVVEL 660
VFKVASGELK NGFAVVRPPG HHAEESTPIN NRGFCYFNSV AIAAKLLQQR LNVSKILIVD 720
WDVHHGNGTQ QAFYSDPNIL YLSLHRYDDG NFFPGSGAPD EVGSGPGLGF NVNMAFTGGL 780
EPPMGDAEYL AAFRTVVMPI ANEFAPDVVL VSSGFDAVEG HASPLGGYRL TAKCFGYLTK 840
QLMGLAGGRL VLALEGGHDL TAICDASEAC VSALLGNELE PLSDEVLQQR PNLNAVRSIE 900
KVLESHSKYW RCLQRGASTL GYSLVEAQKC ETEEAETVTA MASLSVAAKH MGKRSEEEPM 960
EEEPPL 966
Nucleotide Sequence
(Fasta)
CATCAGCAGG AGCTGCTGGC TCTGAAGCAT CAGCAGGAGC TTCTGGAGCA CCAGAGGAAG 60
TTGGAGCGGC ACCGGCGCGA GCAGGAGCTG GAGAAACAGC AGCGCGAGCA GAAGCTACAT 120
CAGCTCAAGA ACAAGGAGCG CGGCCAAGAG AGTGCGGTGG CCAGTACGGA GGTGAAGATG 180
CGTCTGCAGG AGTTCGTGCT GAATAAGAAG AAAGCTCTGG TCCAGAGGAG CCTCAACCAC 240
TGCATGCCCA GTGACCCTCG CTACTGGTAT GGGAAAACCC AGCACAGTTC ACTGGACCAG 300
AGTTCTCCAC CTCAGACAGG GATTTCCACT TATAACCACC CGGTGCTGGG CCTCTACGAC 360
TCTAAAGACG ACTTCCCGCT CCGCAAGACA GCGTCTGAGC CAAACCTGAA GCTACGCTCC 420
AGACTGAAGC AGAAGGTGAC GGAGCGGCGG AGCAGCCCAC TACTGCGGAG GAGGGAGGGG 480
CCGATCACCA CGGCTAAGAA ACGCTCACTG GACATGGCAG AATCGGCGTG TAACAGTGCT 540
CCTGGGTCCG GACCGAGCTC ACCCAACAAC AGCTCCAACA ATATCACTAA CGAGAACGGC 600
ATTGCTGGGT CCATCTCCAA CAGTCCGGTA GAGGTACAGC AGCTCTCAAC ACACTCCATA 660
ATTCTGCACA ATATACAGCT CTGCCATTTG TCCCTGTACA CATCACCCTC CCTCCCCAAC 720
ATCACCCTGG GTCTGCCAGC CCCCAGCTCA TCAAGCGTGG CGTCTGGTCA GCAGGAAGGT 780
GAACGGCTGG CGATGGCGAA CCTGCAGCCT GGATTACCCT TAACCACTCC CTTCATCCCC 840
GGAGCCCACC TGCCTACATA CCTGGCTGCC TCCGCTCTAG AGCGGGAGGG AGGCTCCGCC 900
CACAACCCGC TGCTGCAGCA CATGGTCTCC CAGAACCCTC TGGTGTCAGG CCTGGGTAAT 960
CTGCCCCTGC AGCCTCCCTC CATCCATAAA CTGCGGCAGC ACCGGCCACT GGGCCGAACG 1020
CAGTCGGCGC CGCTCCCCCA GAACGCCCAG GCTCTGCAGC AGCTCGTGGT CCAGCAGCAG 1080
CACCAGCAGT TCCTGGAGAA ACACAAACAG CAGTTCCAGC AGCAGCAACT TCATATGAGC 1140
AAGATTGTAC CCACTGCTAC ACAGGTGTGC AAATATTTGC ACACACACAG CTTGTTTAGA 1200
CCCAGTAAAG AAGAATTGCC AATAAAACAA GTCTCTCTGG ATCAGAAAAA TGCCATTAAA 1260
TCCTCACAGC TATGCTCCAA AAAAGTGGAA AGGCTTTTCA TGACAGTAGA GACAGTTACT 1320
CCAGTAAAAG GAGTCGCTCT TCCTCTCTCT TCGTCTCCAC AGCTTTCCTC GTCTGATCAG 1380
CTTCACTCTG AAATGTCGCT GTGTGTGAAT CAGGCTCTCC TGCTGGAGCA GCAGAGGATC 1440
CATCAGCTGA GGAACTATCA GGCGTCAATG GAGGCCGCCG GCCTGTCCGT CACGTTCCCC 1500
GGACACCGCC CACTGTCCAG AGCACAGTCG TCCCCGGCCT CAGCCACCTT CCCTATCGTG 1560
GTGCAGGAGC CACCAACCAA ACCACGCTTC ACCACCGGGC TGGTGTATGA CACTTTAATG 1620
CAGAAGCATC AGTGTATGTG CGGTAACACC AACACCCACC CGGAGCATGC AGGCCGCATC 1680
CAGAGCATCT GGTCCAGACT GCAGGAGACC GGACTGCGCG GCAAGTGTGA GTGTATTCGG 1740
GGCAGGAAAG CCACACTGGA GGAACTGCAG ACGGTCCACT CTGAAGCTCA TGTAATGCTG 1800
TATGGAACTA ACCCACTAAG ACAGAAACTA GACATATCTA TCTTGAAAGG TAATAGTTCT 1860
GTGACACCCA TGTTCGTGAG GTTGCCCTGT GGGGGGATTG GGGTGGATAG TGACACTATC 1920
TGGAATGAGG TCCACTCGTC TAGCGCAGCC CGCCTGGCTG TCGGCTCTGT GGTGGAGCTG 1980
GTATTTAAAG TGGCATCCGG AGAGCTAAAG AATGGCTTTG CTGTGGTTCG GCCTCCAGGA 2040
CACCACGCTG AGGAGAGCAC CCCAATAAAT AACAGGGGAT TCTGCTATTT CAACTCTGTG 2100
GCCATCGCAG CCAAGCTTCT GCAGCAGCGG CTGAACGTCA GCAAGATCCT GATAGTGGAC 2160
TGGGATGTTC ATCATGGCAA CGGGACCCAA CAGGCTTTCT ACAGCGACCC CAACATCTTA 2220
TACCTTTCTC TCCATCGCTA CGATGACGGG AACTTCTTCC CTGGCAGTGG TGCTCCCGAT 2280
GAGGTGGGCT CGGGACCTGG CCTTGGCTTC AACGTGAACA TGGCCTTCAC CGGTGGCCTG 2340
GAACCTCCCA TGGGCGACGC AGAGTATCTG GCTGCCTTCA GAACGGTGGT GATGCCCATC 2400
GCTAATGAGT TTGCTCCCGA CGTGGTGCTG GTTTCGTCGG GGTTCGACGC AGTGGAGGGC 2460
CACGCTTCGC CACTTGGAGG ATACAGACTC ACGGCCAAGT GTTTTGGCTA CCTGACCAAG 2520
CAGCTGATGG GCCTGGCCGG CGGCCGCCTG GTGCTCGCCC TGGAGGGGGG TCATGACCTC 2580
ACTGCCATTT GCGATGCGTC TGAAGCATGT GTTTCTGCTT TACTAGGAAA CGAGCTGGAG 2640
CCACTTTCTG ATGAGGTTCT GCAGCAAAGG CCCAATCTCA ATGCTGTGCG CTCCATAGAG 2700
AAAGTTCTGG AATCACATAG TAAGTACTGG CGCTGTCTGC AGCGCGGTGC TTCGACGCTG 2760
GGCTACTCTC TTGTTGAAGC TCAGAAGTGT GAGACAGAGG AGGCCGAGAC TGTGACCGCC 2820
ATGGCCTCTC TGTCTGTAGC TGCCAAACAC ATGGGGAAGA GGTCCGAGGA GGAGCCGATG 2880
GAGGAAGAGC CGCCACTGTA G 2902
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 74 0.0 1167
WERAM-Myl-0159 ENSMLUP00000013297.2 Myotis lucifugus 73 0.0 1162
WERAM-Cap-0143 ENSCPOP00000011770.2 Cavia porcellus 72 0.0 1155
WERAM-Lac-0062 ENSLACP00000008432.1 Latimeria chalumnae 73 0.0 1153
WERAM-Aim-0131 ENSAMEP00000011965.1 Ailuropoda melanoleuca 72 0.0 1152
WERAM-Pat-0104 ENSPTRP00000022412.3 Pan troglodytes 72 0.0 1150
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 74 0.0 1149
WERAM-Fec-0140 ENSFCAP00000013207.3 Felis catus 73 0.0 1149
WERAM-Hos-0025 ENSP00000264606.3 Homo sapiens 72 0.0 1148
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 73 0.0 1147
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 73 0.0 1145
WERAM-Mup-0001 ENSMPUP00000000123.1 Mustela putorius furo 71 0.0 1145
WERAM-Chs-0068 ENSCSAP00000002314.1 Chlorocebus sabaeus 73 0.0 1144
WERAM-Sus-0169 ENSSSCP00000025173.1 Sus scrofa 73 0.0 1143
WERAM-Ict-0095 ENSSTOP00000009983.2 Ictidomys tridecemlineatus 74 0.0 1143
WERAM-Bot-0159 ENSBTAP00000023621.5 Bos taurus 73 0.0 1140
WERAM-Pes-0174 ENSPSIP00000020522.1 Pelodiscus sinensis 73 0.0 1139
WERAM-Gog-0157 ENSGGOP00000013985.2 Gorilla gorilla 70 0.0 1130
WERAM-Caf-0133 ENSCAFP00000018541.3 Canis familiaris 72 0.0 1127
WERAM-Anc-0099 ENSACAP00000009498.3 Anolis carolinensis 72 0.0 1126
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 73 0.0 1117
WERAM-Dan-0037 ENSDNOP00000003826.3 Dasypus novemcinctus 71 0.0 1084
WERAM-Poa-0116 ENSPPYP00000014905.2 Pongo abelii 69 0.0 1055
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 69 0.0 1051
WERAM-Mam-0041 ENSMMUP00000007984.2 Macaca mulatta 68 0.0 1048
WERAM-Otg-0061 ENSOGAP00000004404.2 Otolemur garnettii 71 0.0 960
WERAM-Dio-0038 ENSDORP00000004330.1 Dipodomys ordii 62 0.0 908
WERAM-Dar-0198 ENSDARP00000131327.1 Danio rerio 89 0.0 898
WERAM-Leo-0082 ENSLOCP00000011105.1 Lepisosteus oculatus 89 0.0 884
WERAM-Paa-0012 ENSPANP00000003104.1 Papio anubis 73 0.0 877
WERAM-Caj-0101 ENSCJAP00000017313.2 Callithrix jacchus 73 0.0 872
WERAM-Orn-0049 ENSONIP00000005635.1 Oreochromis niloticus 87 0.0 869
WERAM-Mum-0077 ENSMUSP00000008995.8 Mus musculus 87 0.0 867
WERAM-Ran-0135 ENSRNOP00000027622.5 Rattus norvegicus 86 0.0 860
WERAM-Gaa-0020 ENSGACP00000002894.1 Gasterosteus aculeatus 88 0.0 858
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 86 0.0 856
WERAM-Tar-0063 ENSTRUP00000012899.1 Takifugu rubripes 87 0.0 850
WERAM-Loa-0107 ENSLAFP00000009167.2 Loxodonta africana 85 0.0 843
WERAM-Xim-0022 ENSXMAP00000002092.1 Xiphophorus maculatus 85 0.0 842
WERAM-Pof-0029 ENSPFOP00000001978.1 Poecilia formosa 85 0.0 841
WERAM-Ten-0103 ENSTNIP00000011743.1 Tetraodon nigroviridis 87 0.0 835
WERAM-Ova-0200 ENSOARP00000020106.1 Ovis aries 84 0.0 822
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 83 0.0 803
WERAM-Nol-0183 ENSNLEP00000020216.1 Nomascus leucogenys 52 0.0 785
WERAM-Orc-0142 ENSOCUP00000012429.3 Oryctolagus cuniculus 53 0.0 781
WERAM-Eqc-0153 ENSECAP00000016533.1 Equus caballus 52 0.0 778
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 51 0.0 773
WERAM-Gam-0063 ENSGMOP00000006368.1 Gadus morhua 79 0.0 769
WERAM-Tut-0038 ENSTTRP00000002947.1 Tursiops truncatus 68 0.0 765
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 70 0.0 687
WERAM-Ptv-0156 ENSPVAP00000012934.1 Pteropus vampyrus 69 0.0 674
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 49 0.0 669
WERAM-Mod-0095 ENSMODP00000032765.2 Monodelphis domestica 70 0.0 655
WERAM-Ocp-0087 ENSOPRP00000007869.2 Ochotona princeps 69 0.0 647
WERAM-Prc-0092 ENSPCAP00000008303.1 Procavia capensis 70 0.0 645
WERAM-Mae-0089 ENSMEUP00000008883.1 Macropus eugenii 83 0.0 634
WERAM-Sah-0025 ENSSHAP00000002837.1 Sarcophilus harrisii 66 0.0 633
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 68 5e-176 615
WERAM-Mim-0022 ENSMICP00000002393.1 Microcebus murinus 68 3e-175 613
WERAM-Vip-0084 ENSVPAP00000007862.1 Vicugna pacos 52 3e-153 540
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 57 1e-147 521
WERAM-Ect-0082 ENSETEP00000009275.1 Echinops telfairi 61 1e-138 491
WERAM-Tub-0137 ENSTBEP00000014805.1 Tupaia belangeri 73 2e-124 444
WERAM-Chh-0086 ENSCHOP00000009630.1 Choloepus hoffmanni 60 9e-123 439
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 50 4e-121 433
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 47 2e-115 414
WERAM-Cis-0060 ENSCSAVP00000013851.1 Ciona savignyi 55 5e-84 310
WERAM-Sem-0022 EFJ08599 Selaginella moellendorffii 43 5e-79 293
WERAM-Bro-0168 Bo9g014470.1 Brassica oleracea 44 5e-78 290
WERAM-Brr-0181 Bra035942.1-P Brassica rapa 43 7e-78 290
Created Date 25-Jun-2016