WERAM Information


Tag Content
WERAM ID WERAM-Gam-0063
Ensembl Protein ID ENSGMOP00000006368.1
Gene Name hdac4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSGMOG00000005976.1 ENSGMOT00000006554.1 ENSGMOP00000006368.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 2.00e-135 451.2 61 944
HDAC Class-I 3.00e-28 99.4 90 906
Organism Gadus morhua
Domain Profile
  HDAC Class-II

           class-2.txt  27 peRiqailsrlqeaglle..kleelka.rkatkeelqlvHseehvelletae.klekeelesl 85 
+R i + ++++ l+ + ++l++ k +++ l+l H++e++e+ ++ e + ++e+e++
ENSGMOP00000006368.1 61 VQRQLLIAEFQRQHEQLSrqHEVQLQEhIKHQQDLLALKHQQELLEHQRKMErHRLEQEVEKQ 123
344333333333332222012333444134444455666777777776666555555555542 PP
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeeles...... 84
+glvyd+ m khq++++n+++hpE+++Riq+i+srlqe+gl+ ++e ++
ENSGMOP00000006368.1 610 TGLVYDSLMQKHQCICGNSTSHPEHAGRIQSIWSRLQERGLRAHCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVnpmfvr 698
79*********************************************999888887777776666555555554333333333579999 PP
class-2.txt 85 .....ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkiliv 168
++vdsd+i+++++s++aarlavG+v+elv+kv++ge+kngfavvRPPGHHaeest+mGFC+fn+va+aakllqq+l+v+kiliv
ENSGMOP00000006368.1 699 lpcggIGVDSDTIWNDVHSSSAARLAVGSVVELVFKVASGEIKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLSVSKILIV 787
9**************************************************************************************** PP
class-2.txt 169 DwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawnggl...mgdaeylaafrevvlpiakeFkP 254
DwDvHhGnGtq++fy+dp+vlylSlHRyd+g+ffp gsga+devg+g+g+gfnvN+a++ggl mgda+ylaafr+vv+pia+eF+P
ENSGMOP00000006368.1 788 DWDVHHGNGTQQAFYSDPNVLYLSLHRYDDGNFFP--GSGAPDEVGTGAGVGFNVNMAFTGGLeppMGDADYLAAFRTVVMPIANEFAP 874
***********************************..**************************************************** PP
class-2.txt 255 dlvlvsaGfDaaeg..dplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
d+vlvs+GfDa+eg plgg+++takc+++lt+ql++laggrvvl+lEGG++l+ai++a+ea+v+aLlg
ENSGMOP00000006368.1 875 DVVLVSSGFDAVEGhaPPLGGYRLTAKCFGYLTRQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLG 944
**************999***************************************************96 PP

  HDAC Class-I

           class-1.txt  28 sltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaee 78 
+ ++L l+ h++e +e+ +k+e + e+
ENSGMOP00000006368.1 90 KHQQDL----------------------LALKHQQELLEHQRKMERHRLEQ 118
222222......................22223333333333333333221 PP
class-1.txt 132 hhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyav 217
hha s Gfcy n + +a l++ + +++l +d d+hhG+g ++afy v+ +s+h+y++ +ffPg+G ++vg++ g + v
ENSGMOP00000006368.1 752 HHAEESTPMGFCYFNSVAIAAKLLQQrlSVSKILIVDWDVHHGNGTQQAFYSDPNVLYLSLHRYDDgNFFPGSGAPDEVGTGAGVGFNV 840
*******************987777645789*********************************9746********************* PP
class-1.txt 218 nvPlkdgid....DesyekifksviskvieafePeavvlqcGaDslagD..rlgefnlsikghaec 277
n+ ++ g++ D y + f++v+ ++ + f P++v++ G D++ g +lg + l+ k ++
ENSGMOP00000006368.1 841 NMAFTGGLEppmgDADYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHapPLGGYRLTAKCFGYL 906
**98888644444*********************************976347*******9988765 PP

Protein Sequence
(Fasta)
LVDVSTAAVL PMQVPPTTPN ILPMDLRIXX XXXXXXXXXX XXXXXQQLQE ELLSLKHKQQ 60
VQRQLLIAEF QRQHEQLSRQ HEVQLQEHIK HQQDLLALKH QQELLEHQRK MERHRLEQEV 120
EKQQREHKLQ QLKNKERGQE SAVASTEVKM RLQEFVLNKK KALAHRSLNH CLPSDPRYWY 180
GKTQHSSLDQ SSPPQTALSA YNHSMLGMYD SRDDFPLRKT ASEPNLKLRS RLKQKVTERR 240
SSPLLRRKDG AITTAKKRSL DMAESACNSA PGSGPSSPNN SSSNIPHENG LPISSSPCEV 300
SLLQRLAARD GSVSQLSLYT SPSLPNITLG LPATGPASSL LSVRQDGESR LALQGLQHGI 360
PLSPPFRPGT HLPAYLEGAG VPGGSHNPLL QHMVLLEQAH NPLGLPLSSP SVSKLARGHR 420
PLGRTQSAPL PQQQAGPAQA LQQLVVQQQH QQFLEKHKQQ FQQQXXXXXX XSSSSSSSRQ 480
HQSHPEETEE ELREHQGLSS VSPPAPPSTA APPPWPQRGL VIKQEPLDPQ EEQEERERQT 540
EELLFRQQQA LLLEQQRIHQ LRNYQASMEA AGLSISFAGH RPLSRAQSSP ASASFPLVVQ 600
DPPSKPRFTT GLVYDSLMQK HQCICGNSTS HPEHAGRIQS IWSRLQERGL RAHCEXXXXX 660
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX AVNPMFVRLP CGGIGVDSDT IWNDVHSSSA 720
ARLAVGSVVE LVFKVASGEI KNGFAVVRPP GHHAEESTPM GFCYFNSVAI AAKLLQQRLS 780
VSKILIVDWD VHHGNGTQQA FYSDPNVLYL SLHRYDDGNF FPGSGAPDEV GTGAGVGFNV 840
NMAFTGGLEP PMGDADYLAA FRTVVMPIAN EFAPDVVLVS SGFDAVEGHA PPLGGYRLTA 900
KCFGYLTRQL MGLAGGRVVL ALEGGHDLTA ICDASEACVS ALLGNELDPL PDEVVQQRPN 960
ANAVQSMENV LEIQGKYWRS LQRSASKLGY SLSEVLRSES EETETVTAMA SLSVANKHIS 1020
KRTEEEPMEE E 1031
Nucleotide Sequence
(Fasta)
CTAGTGGACG TGAGCACGGC GGCTGTGCTC CCCATGCAGG TGCCCCCTAC CACCCCCAAC 60
ATTCTCCCCA TGGACCTCCG CATCGNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 120
NNNNNNNNNN NNNAACAGCA GCTACAGGAG GAGCTCCTGT CTCTGAAGCA CAAGCAGCAG 180
GTCCAGAGAC AGCTGCTGAT CGCAGAGTTC CAGAGGCAGC ATGAACAACT GTCCAGGCAG 240
CACGAGGTGC AGCTACAGGA ACACATCAAG CACCAGCAGG ATCTGCTGGC CCTGAAGCAC 300
CAGCAGGAGC TGCTGGAGCA CCAGAGGAAG ATGGAGCGCC ACCGCCTGGA GCAGGAGGTG 360
GAGAAGCAGC AGCGGGAGCA CAAGCTGCAG CAGCTCAAGA ACAAGGAGCG GGGCCAGGAG 420
AGTGCGGTAG CGAGCACAGA GGTGAAGATG CGCCTGCAGG AGTTTGTCCT GAACAAGAAG 480
AAGGCGTTGG CCCACAGGAG CCTGAACCAC TGCCTGCCCA GCGACCCACG CTACTGGTAT 540
GGGAAAACTC AGCACAGTTC TCTGGACCAG AGCTCGCCGC CGCAGACCGC CCTCTCGGCC 600
TACAACCACT CGATGCTGGG GATGTACGAC TCGCGGGACG ACTTCCCCCT GCGCAAGACA 660
GCGTCGGAGC CCAACCTGAA GCTGCGGTCC CGGTTGAAGC AGAAGGTGAC GGAGCGGCGC 720
AGCAGCCCTC TGCTCCGCAG GAAGGACGGC GCCATCACCA CCGCCAAGAA GCGCTCCCTG 780
GACATGGCCG AATCGGCGTG TAACAGCGCC CCTGGATCCG GCCCATCCTC CCCCAACAAC 840
AGCTCCAGTA ACATCCCCCA CGAGAACGGA CTGCCCATTT CTAGCAGCCC GTGTGAGGTA 900
TCCCTGCTCC AGAGGCTGGC GGCCAGAGAT GGCTCTGTGA GCCAGCTGTC TCTCTACACC 960
TCACCCTCAC TGCCCAACAT CACCCTGGGC CTGCCAGCCA CCGGCCCGGC CAGCAGCTTA 1020
CTGTCAGTCC GTCAGGACGG AGAGAGCCGG CTGGCGTTGC AAGGGTTACA GCACGGGATC 1080
CCGTTGTCTC CGCCGTTCCG GCCCGGCACT CACTTGCCGG CCTACCTGGA GGGGGCTGGG 1140
GTGCCTGGGG GCTCCCACAA CCCCCTCCTC CAACACATGG TCCTACTGGA GCAGGCCCAC 1200
AACCCACTAG GACTCCCCCT GTCCTCGCCC TCCGTGTCCA AGCTGGCACG GGGCCACCGG 1260
CCCCTGGGAC GCACCCAGTC GGCCCCCCTG CCCCAGCAGC AGGCCGGGCC GGCCCAGGCC 1320
CTGCAGCAGC TGGTGGTCCA GCAGCAGCAC CAACAGTTCC TGGAGAAACA CAAGCAGCAG 1380
TTCCAGCAGC AACANNNNNN NNNNNNNNNN NCCTCCTCCT CCTCCTCCTC CTCCCGCCAG 1440
CACCAGAGCC ATCCCGAGGA GACGGAGGAG GAGCTCCGGG AGCACCAGGG GCTCTCCTCG 1500
GTCTCGCCCC CAGCTCCTCC TTCCACAGCA GCGCCGCCTC CCTGGCCTCA GCGGGGCCTG 1560
GTCATCAAGC AGGAGCCCCT TGACCCCCAG GAGGAGCAGG AGGAGCGGGA GCGGCAGACC 1620
GAGGAGCTGC TCTTCAGACA GCAGCAGGCT CTGCTGTTGG AGCAGCAGAG GATCCACCAG 1680
CTGAGGAACT ACCAGGCCTC CATGGAGGCG GCTGGCCTCT CCATCAGCTT CGCCGGGCAC 1740
CGCCCCTTGT CGAGGGCCCA ATCATCACCC GCCTCCGCCT CCTTCCCATT GGTGGTCCAA 1800
GACCCGCCCT CCAAGCCACG CTTCACCACA GGTCTGGTGT ACGACTCTCT GATGCAGAAG 1860
CACCAGTGCA TCTGTGGTAA CAGCACCAGC CACCCGGAGC ACGCTGGCCG CATCCAAAGC 1920
ATCTGGTCCA GGCTGCAGGA AAGAGGCCTG CGGGCACACT GTGAGNNNNN NNNNNNNNNN 1980
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 2040
NNNNNNNNNN NNNNNNNNNN NNNNNNNNGT GCTGTGAACC CCATGTTTGT GCGACTGCCT 2100
TGTGGAGGAA TCGGGGTGGA CAGTGACACC ATTTGGAACG ACGTGCACTC GTCGAGCGCG 2160
GCCCGCCTGG CGGTGGGCTC GGTGGTGGAG CTGGTGTTCA AGGTCGCATC CGGAGAGATC 2220
AAGAACGGGT TCGCCGTGGT ACGACCCCCG GGCCACCACG CGGAGGAGAG CACGCCCATG 2280
GGTTTCTGTT ACTTCAACTC GGTTGCCATC GCTGCCAAAC TTCTCCAGCA GAGGCTGAGT 2340
GTCAGCAAGA TCCTCATCGT GGACTGGGAC GTTCACCATG GTAACGGTAC TCAGCAGGCA 2400
TTCTACAGCG ACCCCAACGT CCTCTATCTG TCCCTCCATC GCTACGACGA CGGCAACTTC 2460
TTCCCTGGCA GCGGGGCGCC AGATGAGGTG GGCACAGGAG CAGGGGTTGG CTTCAACGTC 2520
AACATGGCGT TCACTGGAGG ACTGGAGCCT CCCATGGGCG ACGCCGACTA CCTGGCTGCC 2580
TTCAGGACGG TGGTGATGCC CATCGCCAAT GAGTTTGCCC CCGACGTGGT GCTGGTGTCC 2640
TCGGGCTTCG ACGCGGTGGA GGGCCACGCT CCTCCGCTGG GAGGTTACAG ACTCACCGCC 2700
AAATGCTTCG GCTACCTGAC CCGGCAGCTG ATGGGCCTGG CTGGGGGGAG GGTGGTGCTG 2760
GCGCTGGAGG GGGGTCACGA CCTCACCGCC ATCTGTGACG CCTCCGAGGC CTGCGTCTCC 2820
GCGCTGCTCG GCAACGAGCT GGACCCACTA CCAGACGAGG TGGTGCAGCA GAGACCCAAC 2880
GCCAACGCTG TCCAGTCCAT GGAGAATGTC CTGGAGATCC AGGGCAAGTA CTGGCGCTCT 2940
CTGCAGCGGT CTGCGTCGAA GCTGGGCTAC TCCCTGAGCG AGGTGCTCCG CTCTGAGAGC 3000
GAAGAGACCG AGACGGTCAC CGCCATGGCG TCACTGTCTG TCGCCAACAA GCACATCAGC 3060
AAAAGGACTG AGGAGGAGCC GATGGAGGAG GAA 3094
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Xim-0022 ENSXMAP00000002092.1 Xiphophorus maculatus 74 0.0 1276
WERAM-Gaa-0020 ENSGACP00000002894.1 Gasterosteus aculeatus 80 0.0 799
WERAM-Orn-0049 ENSONIP00000005635.1 Oreochromis niloticus 83 0.0 796
WERAM-Dar-0198 ENSDARP00000131327.1 Danio rerio 82 0.0 791
WERAM-Pof-0029 ENSPFOP00000001978.1 Poecilia formosa 77 0.0 782
WERAM-Tar-0063 ENSTRUP00000012899.1 Takifugu rubripes 81 0.0 771
WERAM-Asm-0202 ENSAMXP00000018862.1 Astyanax mexicanus 79 0.0 770
WERAM-Leo-0082 ENSLOCP00000011105.1 Lepisosteus oculatus 79 0.0 765
WERAM-Pes-0174 ENSPSIP00000020522.1 Pelodiscus sinensis 78 0.0 763
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 77 0.0 761
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 77 0.0 759
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 77 0.0 758
WERAM-Ten-0103 ENSTNIP00000011743.1 Tetraodon nigroviridis 77 0.0 756
WERAM-Bot-0159 ENSBTAP00000023621.5 Bos taurus 78 0.0 748
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 77 0.0 747
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 77 0.0 746
WERAM-Myl-0159 ENSMLUP00000013297.2 Myotis lucifugus 77 0.0 746
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 77 0.0 745
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 78 0.0 744
WERAM-Mum-0077 ENSMUSP00000008995.8 Mus musculus 77 0.0 743
WERAM-Loa-0107 ENSLAFP00000009167.2 Loxodonta africana 77 0.0 742
WERAM-Mup-0001 ENSMPUP00000000123.1 Mustela putorius furo 77 0.0 742
WERAM-Hos-0025 ENSP00000264606.3 Homo sapiens 77 0.0 741
WERAM-Pat-0104 ENSPTRP00000022412.3 Pan troglodytes 77 0.0 740
WERAM-Fec-0140 ENSFCAP00000013207.3 Felis catus 76 0.0 739
WERAM-Cap-0143 ENSCPOP00000011770.2 Cavia porcellus 76 0.0 738
WERAM-Chs-0068 ENSCSAP00000002314.1 Chlorocebus sabaeus 76 0.0 737
WERAM-Ran-0135 ENSRNOP00000027622.5 Rattus norvegicus 77 0.0 737
WERAM-Anc-0099 ENSACAP00000009498.3 Anolis carolinensis 74 0.0 736
WERAM-Aim-0131 ENSAMEP00000011965.1 Ailuropoda melanoleuca 76 0.0 736
WERAM-Ict-0095 ENSSTOP00000009983.2 Ictidomys tridecemlineatus 76 0.0 734
WERAM-Lac-0062 ENSLACP00000008432.1 Latimeria chalumnae 75 0.0 734
WERAM-Paa-0012 ENSPANP00000003104.1 Papio anubis 76 0.0 732
WERAM-Otg-0061 ENSOGAP00000004404.2 Otolemur garnettii 76 0.0 731
WERAM-Sus-0169 ENSSSCP00000025173.1 Sus scrofa 77 0.0 731
WERAM-Caj-0101 ENSCJAP00000017313.2 Callithrix jacchus 76 0.0 729
WERAM-Gog-0157 ENSGGOP00000013985.2 Gorilla gorilla 76 0.0 725
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 74 0.0 724
WERAM-Ova-0200 ENSOARP00000020106.1 Ovis aries 75 0.0 719
WERAM-Caf-0133 ENSCAFP00000018541.3 Canis familiaris 77 0.0 714
WERAM-Dan-0037 ENSDNOP00000003826.3 Dasypus novemcinctus 72 0.0 679
WERAM-Tut-0038 ENSTTRP00000002947.1 Tursiops truncatus 77 0.0 645
WERAM-Mam-0041 ENSMMUP00000007984.2 Macaca mulatta 68 0.0 637
WERAM-Poa-0116 ENSPPYP00000014905.2 Pongo abelii 69 0.0 635
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 65 2e-173 607
WERAM-Ptv-0156 ENSPVAP00000012934.1 Pteropus vampyrus 62 2e-169 593
WERAM-Orc-0142 ENSOCUP00000012429.3 Oryctolagus cuniculus 60 2e-164 577
WERAM-Nol-0183 ENSNLEP00000020216.1 Nomascus leucogenys 60 3e-164 577
WERAM-Eqc-0153 ENSECAP00000016533.1 Equus caballus 60 4e-164 576
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 60 1e-163 574
WERAM-Dio-0163 ENSDORP00000015416.1 Dipodomys ordii 61 9e-163 572
WERAM-Mod-0095 ENSMODP00000032765.2 Monodelphis domestica 61 2e-162 571
WERAM-Mae-0145 ENSMEUP00000015025.1 Macropus eugenii 68 3e-162 570
WERAM-Sah-0044 ENSSHAP00000005074.1 Sarcophilus harrisii 84 7e-162 568
WERAM-Ocp-0087 ENSOPRP00000007869.2 Ochotona princeps 61 8e-162 568
WERAM-Prc-0092 ENSPCAP00000008303.1 Procavia capensis 61 1e-161 568
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 64 5e-156 549
WERAM-Mim-0022 ENSMICP00000002393.1 Microcebus murinus 59 3e-151 533
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 55 2e-146 517
WERAM-Vip-0084 ENSVPAP00000007862.1 Vicugna pacos 70 1e-140 498
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 52 2e-133 474
WERAM-Ect-0082 ENSETEP00000009275.1 Echinops telfairi 53 8e-125 446
WERAM-Tub-0137 ENSTBEP00000014805.1 Tupaia belangeri 67 1e-122 438
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 46 2e-111 401
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 46 5e-106 383
WERAM-Chh-0086 ENSCHOP00000009630.1 Choloepus hoffmanni 53 6e-104 376
WERAM-Cis-0060 ENSCSAVP00000013851.1 Ciona savignyi 53 2e-86 318
WERAM-Sem-0010 EFJ19764 Selaginella moellendorffii 44 2e-72 271
Created Date 25-Jun-2016