WERAM Information


Tag Content
WERAM ID WERAM-Cap-0143
Ensembl Protein ID ENSCPOP00000011770.2
Gene Name HDAC4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSCPOG00000013072.3 ENSCPOT00000013199.2 ENSCPOP00000011770.2
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 3.90e-154 512.6 94 993
HDAC Class-I 8.90e-32 110.8 122 958
Organism Cavia porcellus
Domain Profile
  HDAC Class-II

           class-2.txt  10 mlkhqale.enkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeelesltvd 88 
+ +h+ l+ +++++ E+ + q++l ++++lle+ +l+ r+ +++el++ H e+ +++l+++ek +++ ++s++v+
ENSCPOP00000011770.2 94 QRQHEQLSrQHEAQLHEHIKQQQEMLALKHQQELLEHQRKLE-RHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVK 172
445555440444456788888888888888888888888886.5667889999999999999999988888877774443 PP
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeeles...... 84
+glvyd+ mlkhq+ ++n+++hpE+++Riq+i+srlqe+gl++k+e++++rkat+eelq+vHse+h+ l++t+ +l++++l+s
ENSCPOP00000011770.2 653 TGLVYDTLMLKHQCACGNTNSHPEHAGRIQSIWSRLQETGLRSKCECVRGRKATLEELQTVHSEAHTLLYGTN-PLNRQKLDSkkllgs 740
79***********************************************************************.*************** PP
class-2.txt 85 ............ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk 161
++vdsd+i++e++s++aarlavG+v+elv+kv++gelkngfavvRPPGHHaeest+mGFC+fn+vavaa+llqq+l+
ENSCPOP00000011770.2 741 ltsvfvrlpcggVGVDSDTIWNEVHSSSAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAARLLQQRLS 829
***************************************************************************************** PP
class-2.txt 162 vkkilivDwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawnggl...mgdaeylaafrevvlp 247
v++ilivDwDvHhGnGtq++fy+dp+vly+SlHRyd+g+ffp gsga+devg+g+g+gfnvN+a++ggl mgd+eylaafr+vv+p
ENSCPOP00000011770.2 830 VSRILIVDWDVHHGNGTQQAFYSDPSVLYVSLHRYDDGNFFP--GSGAPDEVGTGPGVGFNVNMAFTGGLdppMGDTEYLAAFRTVVMP 916
******************************************..********************************************* PP
class-2.txt 248 iakeFkPdlvlvsaGfDaaeg..dplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
ia+eF+Pd+vlvs+GfDa+eg +plgg++++akc+++ltkql++laggr+vl+lEGG++l+ai++a+ea+v+aLlg
ENSCPOP00000011770.2 917 IASEFAPDMVLVSSGFDAVEGhpAPLGGYNLSAKCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLG 993
*********************999***************************************************96 PP

  HDAC Class-I

           class-1.txt  34 vlnyglskkleivkpkkasaeellkfhseeyieflkkvepenae.....elskelkk 85 
+ +l ++ + ++ + +el k h+e+ ++ lk+ e+ +++ e++ +l++
ENSCPOP00000011770.2 122 KHQQELLEHQRK-LERHRQEQELEKQHREQKLQQLKNKEKGKESavastEVKMKLQE 177
233333333222.23455678999999999999999999888773333233334455 PP
class-1.txt 17 gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyi.....eflkkvepenae...elskelkkf...nvgedc.P 93
+++hp r++ + + + + gl k e v+ +ka+ eel+++hse++ + l++ + ++++ +l++ + + +vg d+
ENSCPOP00000011770.2 671 TNSHPEHAGRIQSIWSRLQETGLRSKCECVRGRKATLEELQTVHSEAHTllygtNPLNRQKLDSKKllgSLTSVFVRLpcgGVGVDSdT 759
56788888999999999999999999999999999999999999987641122244555555555555533333333322256666523 PP
class-1.txt 94 vfdglfey..cqlitGasleaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgve 176
+ +++++ ++l G +e + k+ ++e + a+ G hha s Gfcy n + +a l++ + +r+l +d d+hhG+g +
ENSCPOP00000011770.2 760 IWNEVHSSsaARLAVGCVVELVFKVATGELKngFAVVRPPG-HHAEESTPMGFCYFNSVAVAARLLQQrlSVSRILIVDWDVHHGNGTQ 847
66777654115677899999999999887661255555544.*****************99987776645789**************** PP
class-1.txt 177 eafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlkdgid....DesyekifksviskvieafePeavvlqcGaDsla 260
+afy v+ vs+h+y++ +ffPg+G ++vg++ g + vn+ ++ g+d D++y + f++v+ ++ + f P++v++ G D++
ENSCPOP00000011770.2 848 QAFYSDPSVLYVSLHRYDDgNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDppmgDTEYLAAFRTVVMPIASEFAPDMVLVSSGFDAVE 936
*****************9746************************99998766669********************************9 PP
class-1.txt 261 gD..rlgefnlsikghaecvkf 280
g +lg +nls k ++ k
ENSCPOP00000011770.2 937 GHpaPLGGYNLSAKCFGYLTKQ 958
963369*******999876655 PP

Protein Sequence
(Fasta)
MSSQSHPDGL SGRDQPVELL NPARVNHMPS TVDVATALPL QVAPTTVPMD LRLDHQFSMP 60
VAEPALREQQ LQQELLALKQ KQQIQRQILI AEFQRQHEQL SRQHEAQLHE HIKQQQEMLA 120
LKHQQELLEH QRKLERHRQE QELEKQHREQ KLQQLKNKEK GKESAVASTE VKMKLQEFVL 180
NKKKALAHRN LNQCISSDPR FWYGKTQHSS LDQSSPPQTG VSASYNHPVL GMYDAKDDFP 240
LRKTASEPNL KLRSRLKQKV AERRSSPLLR RKDGPVVTAL KKRPLDVTDS ACSSAPGSGP 300
SSPNSSSGNV STENGIVSTV PSVPAETSLA HRLVTREASV APLPLYTSPS LPNITLGLPA 360
TGPSTGTAAQ QDAERLALPG LQQRISLFPG THLAPYLGAS PLERDSGAAH NPLLQHMVLL 420
EQPPTQTPLV TGLGALPLHA QPLVGADRVS PSMHKLRQHR PLGRTQSAPL PQSAQALQHL 480
VIQQQHQQFL EKHKQHFQQQ QLHMGKIIPK SSEPARQPES HPEETEEELR EHQALLDEPY 540
LDRLPGPKEG HALAVQVKQE PIESDEDEVE PTREAEPGQR PPTEQELLFR QQALLLEQQR 600
IHQLRTYQAS MEAAGIPVSF SSHRPLSRAQ SSPASATFPV TVQEPPSKPR FTTGLVYDTL 660
MLKHQCACGN TNSHPEHAGR IQSIWSRLQE TGLRSKCECV RGRKATLEEL QTVHSEAHTL 720
LYGTNPLNRQ KLDSKKLLGS LTSVFVRLPC GGVGVDSDTI WNEVHSSSAA RLAVGCVVEL 780
VFKVATGELK NGFAVVRPPG HHAEESTPMG FCYFNSVAVA ARLLQQRLSV SRILIVDWDV 840
HHGNGTQQAF YSDPSVLYVS LHRYDDGNFF PGSGAPDEVG TGPGVGFNVN MAFTGGLDPP 900
MGDTEYLAAF RTVVMPIASE FAPDMVLVSS GFDAVEGHPA PLGGYNLSAK CFGYLTKQLM 960
GLAGGRIVLA LEGGHDLTAI CDASEACVSA LLGNELEPLP EKVLQQRPNA NAVRSMEKVM 1020
EIHSKYWRCL QRLSSTVGHS LIEAQKCENE EAETVTAMAS LSVGVKPTEK RPEEEPMEEE 1080
PPL 1083
Nucleotide Sequence
(Fasta)
ATGAGCTCCC AAAGCCATCC AGATGGTCTT TCTGGCCGAG ACCAGCCTGT GGAGCTGCTG 60
AACCCTGCCC GTGTGAACCA CATGCCCAGC ACGGTGGATG TGGCCACGGC ACTGCCCTTG 120
CAGGTGGCGC CCACTACAGT GCCCATGGAC CTGCGCCTGG ACCACCAGTT CTCGATGCCT 180
GTAGCTGAAC CGGCGCTCCG GGAGCAACAG CTGCAGCAGG AGCTCCTGGC ACTGAAGCAG 240
AAGCAGCAGA TCCAGCGGCA GATCCTCATT GCTGAGTTCC AACGACAGCA CGAGCAGCTG 300
TCCCGACAGC ATGAGGCCCA GCTGCATGAG CACATAAAGC AGCAGCAGGA GATGCTGGCT 360
CTCAAGCACC AGCAGGAACT GCTGGAGCAC CAGCGCAAGC TGGAGAGGCA CCGCCAGGAG 420
CAGGAGCTGG AGAAGCAGCA CCGTGAGCAG AAGCTGCAGC AGCTCAAGAA CAAGGAGAAG 480
GGCAAGGAGA GTGCTGTGGC CAGCACAGAG GTGAAGATGA AGCTCCAGGA GTTTGTCCTC 540
AACAAGAAGA AGGCGCTGGC CCACCGGAAC CTGAACCAGT GCATTTCCAG TGATCCCCGC 600
TTCTGGTATG GGAAGACACA GCACAGCTCC CTGGACCAGA GCTCTCCACC CCAGACGGGG 660
GTGTCAGCCT CCTATAACCA CCCAGTCCTG GGGATGTACG ATGCCAAAGA TGACTTCCCT 720
CTGAGGAAGA CAGCTTCTGA ACCCAACCTG AAATTGCGGT CTCGGCTTAA GCAGAAAGTG 780
GCAGAGAGAC GGAGTAGCCC CCTGCTGCGC AGGAAGGATG GGCCCGTGGT TACTGCTCTA 840
AAAAAGCGCC CCTTGGATGT CACAGACTCT GCGTGTAGCA GCGCCCCAGG CTCCGGGCCC 900
AGCTCACCCA ACAGCAGCTC TGGCAACGTC AGCACTGAGA ACGGCATTGT GTCTACTGTG 960
CCCAGCGTCC CAGCCGAGAC GAGTTTGGCG CACAGACTTG TGACTCGAGA AGCCTCCGTC 1020
GCCCCGCTCC CTCTCTATAC ATCGCCATCC CTGCCCAACA TTACCTTGGG ACTTCCTGCT 1080
ACAGGCCCTT CCACTGGCAC CGCGGCCCAG CAGGACGCTG AAAGGCTTGC GCTCCCTGGC 1140
CTGCAGCAGC GGATCTCCCT CTTCCCTGGC ACCCACCTGG CCCCTTACCT GGGAGCCTCG 1200
CCCCTGGAGC GGGACAGTGG TGCGGCACAC AACCCCCTTC TGCAGCACAT GGTCCTGCTT 1260
GAGCAGCCGC CCACACAGAC TCCCCTTGTC ACAGGTCTGG GTGCTCTGCC CCTGCACGCA 1320
CAGCCCCTGG TCGGCGCAGA CCGCGTATCC CCATCCATGC ACAAGCTGCG GCAGCACCGC 1380
CCATTGGGGC GCACGCAGTC GGCACCGCTG CCACAGAGCG CACAGGCGCT GCAGCACCTG 1440
GTAATCCAGC AGCAGCACCA GCAGTTCCTG GAGAAGCACA AGCAGCACTT CCAGCAGCAA 1500
CAGCTGCACA TGGGCAAGAT AATCCCCAAA TCCAGTGAGC CGGCCCGGCA GCCCGAGAGC 1560
CACCCTGAGG AGACGGAGGA GGAGCTCCGT GAGCACCAGG CCCTGCTGGA TGAGCCCTAC 1620
CTGGACCGGC TCCCAGGGCC AAAGGAGGGG CATGCTCTGG CTGTGCAGGT GAAGCAGGAG 1680
CCCATTGAGA GCGATGAGGA CGAAGTGGAG CCCACACGGG AGGCAGAGCC TGGCCAGCGC 1740
CCACCCACCG AGCAGGAGCT GCTCTTCAGA CAGCAAGCAC TCCTGCTAGA GCAGCAGCGG 1800
ATCCACCAGC TGAGGACCTA CCAGGCATCC ATGGAAGCTG CAGGCATTCC CGTGTCCTTC 1860
AGCAGCCACC GGCCTCTGTC CCGGGCACAG TCCTCCCCAG CATCTGCCAC TTTCCCCGTG 1920
ACTGTCCAGG AGCCCCCCAG CAAGCCAAGG TTCACCACAG GCCTTGTGTA CGACACGCTA 1980
ATGCTGAAGC ACCAGTGTGC CTGTGGGAAC ACGAACAGCC ACCCCGAGCA TGCCGGGAGG 2040
ATCCAGAGCA TCTGGTCCCG CCTACAGGAA ACTGGACTCC GCAGCAAGTG TGAGTGTGTC 2100
CGAGGACGGA AGGCCACACT GGAAGAGCTG CAGACGGTAC ACTCGGAGGC CCACACGCTC 2160
CTCTACGGCA CAAACCCTCT CAACAGGCAG AAGCTGGACA GTAAGAAACT TCTAGGCTCC 2220
CTGACCTCCG TGTTTGTGAG GCTCCCTTGC GGTGGTGTCG GGGTGGACAG CGACACCATC 2280
TGGAATGAGG TGCACTCGTC AAGTGCGGCC CGTCTGGCTG TGGGTTGCGT GGTGGAGTTA 2340
GTCTTCAAGG TGGCCACGGG GGAGCTGAAG AATGGCTTTG CTGTGGTACG GCCCCCAGGA 2400
CACCACGCGG AGGAGAGCAC GCCCATGGGC TTTTGCTACT TCAACTCTGT GGCAGTGGCA 2460
GCCCGGCTCC TGCAGCAGCG GCTCAGTGTG AGCAGGATCC TCATTGTGGA CTGGGATGTG 2520
CACCACGGGA ATGGAACCCA GCAGGCTTTC TACAGTGACC CCAGTGTCCT CTACGTGTCC 2580
CTGCACCGCT ATGACGACGG AAACTTTTTT CCAGGCAGCG GCGCACCTGA TGAGGTGGGC 2640
ACGGGGCCAG GCGTGGGCTT CAACGTCAAC ATGGCCTTCA CGGGTGGCCT TGACCCCCCC 2700
ATGGGAGACA CGGAGTACCT GGCAGCCTTC AGAACCGTGG TCATGCCAAT CGCCAGCGAG 2760
TTTGCCCCAG ACATGGTGCT GGTCTCATCG GGCTTTGATG CTGTGGAGGG CCACCCTGCA 2820
CCTCTCGGAG GGTACAATCT CTCTGCCAAA TGTTTTGGGT ACCTCACGAA GCAGCTAATG 2880
GGCCTGGCTG GTGGCCGCAT CGTGCTGGCC CTCGAGGGAG GACACGACCT CACAGCCATC 2940
TGCGACGCCT CCGAAGCCTG CGTGTCTGCT TTGTTAGGAA ATGAGCTTGA GCCTCTGCCA 3000
GAAAAGGTCT TACAGCAAAG ACCCAATGCC AATGCCGTCC GCTCCATGGA GAAGGTCATG 3060
GAGATCCACA GTAAGTACTG GCGCTGCCTA CAGCGCTTGT CCTCCACGGT GGGGCACTCG 3120
CTGATCGAGG CACAGAAGTG TGAGAATGAA GAAGCCGAGA CAGTCACCGC CATGGCCTCA 3180
CTGTCCGTGG GTGTGAAGCC CACTGAGAAG AGGCCGGAGG AGGAGCCCAT GGAAGAGGAG 3240
CCACCCCTG
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Pat-0104 ENSPTRP00000022412.3 Pan troglodytes 93 0.0 1806
WERAM-Hos-0025 ENSP00000264606.3 Homo sapiens 93 0.0 1805
WERAM-Chs-0068 ENSCSAP00000002314.1 Chlorocebus sabaeus 92 0.0 1788
WERAM-Bot-0159 ENSBTAP00000023621.5 Bos taurus 92 0.0 1788
WERAM-Mup-0001 ENSMPUP00000000123.1 Mustela putorius furo 92 0.0 1778
WERAM-Aim-0131 ENSAMEP00000011965.1 Ailuropoda melanoleuca 91 0.0 1773
WERAM-Ict-0095 ENSSTOP00000009983.2 Ictidomys tridecemlineatus 95 0.0 1749
WERAM-Caf-0133 ENSCAFP00000018541.3 Canis familiaris 91 0.0 1739
WERAM-Mum-0077 ENSMUSP00000008995.8 Mus musculus 93 0.0 1721
WERAM-Ran-0135 ENSRNOP00000027622.5 Rattus norvegicus 93 0.0 1720
WERAM-Myl-0159 ENSMLUP00000013297.2 Myotis lucifugus 91 0.0 1715
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 89 0.0 1704
WERAM-Poa-0116 ENSPPYP00000014905.2 Pongo abelii 90 0.0 1704
WERAM-Sus-0169 ENSSSCP00000025173.1 Sus scrofa 91 0.0 1685
WERAM-Mam-0041 ENSMMUP00000007984.2 Macaca mulatta 89 0.0 1684
WERAM-Fec-0140 ENSFCAP00000013207.3 Felis catus 92 0.0 1680
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 89 0.0 1669
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 87 0.0 1665
WERAM-Gog-0157 ENSGGOP00000013985.2 Gorilla gorilla 87 0.0 1656
WERAM-Dan-0037 ENSDNOP00000003826.3 Dasypus novemcinctus 88 0.0 1637
WERAM-Pes-0174 ENSPSIP00000020522.1 Pelodiscus sinensis 88 0.0 1637
WERAM-Anc-0099 ENSACAP00000009498.3 Anolis carolinensis 81 0.0 1624
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 86 0.0 1605
WERAM-Lac-0062 ENSLACP00000008432.1 Latimeria chalumnae 83 0.0 1602
WERAM-Loa-0107 ENSLAFP00000009167.2 Loxodonta africana 85 0.0 1583
WERAM-Otg-0061 ENSOGAP00000004404.2 Otolemur garnettii 88 0.0 1581
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 88 0.0 1558
WERAM-Dio-0038 ENSDORP00000004330.1 Dipodomys ordii 84 0.0 1533
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 88 0.0 1485
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 79 0.0 1483
WERAM-Leo-0082 ENSLOCP00000011105.1 Lepisosteus oculatus 80 0.0 1464
WERAM-Ova-0200 ENSOARP00000020106.1 Ovis aries 83 0.0 1440
WERAM-Dar-0198 ENSDARP00000131327.1 Danio rerio 77 0.0 1439
WERAM-Orn-0049 ENSONIP00000005635.1 Oreochromis niloticus 72 0.0 1283
WERAM-Tar-0063 ENSTRUP00000012899.1 Takifugu rubripes 69 0.0 1258
WERAM-Ten-0103 ENSTNIP00000011743.1 Tetraodon nigroviridis 69 0.0 1253
WERAM-Gaa-0020 ENSGACP00000002894.1 Gasterosteus aculeatus 69 0.0 1251
WERAM-Xim-0022 ENSXMAP00000002092.1 Xiphophorus maculatus 69 0.0 1242
WERAM-Asm-0202 ENSAMXP00000018862.1 Astyanax mexicanus 73 0.0 1236
WERAM-Pof-0029 ENSPFOP00000001978.1 Poecilia formosa 69 0.0 1231
WERAM-Paa-0012 ENSPANP00000003104.1 Papio anubis 93 0.0 1155
WERAM-Caj-0101 ENSCJAP00000017313.2 Callithrix jacchus 92 0.0 1142
WERAM-Tas-0071 ENSTSYP00000007103.1 Tarsius syrichta 74 0.0 1062
WERAM-Tut-0038 ENSTTRP00000002947.1 Tursiops truncatus 84 0.0 1009
WERAM-Ptv-0078 ENSPVAP00000007254.1 Pteropus vampyrus 73 0.0 991
WERAM-Mod-0095 ENSMODP00000032765.2 Monodelphis domestica 57 0.0 967
WERAM-Nol-0183 ENSNLEP00000020216.1 Nomascus leucogenys 54 0.0 962
WERAM-Sah-0044 ENSSHAP00000005074.1 Sarcophilus harrisii 65 0.0 956
WERAM-Eqc-0153 ENSECAP00000016533.1 Equus caballus 55 0.0 955
WERAM-Orc-0142 ENSOCUP00000012429.3 Oryctolagus cuniculus 55 0.0 953
WERAM-Prc-0092 ENSPCAP00000008303.1 Procavia capensis 59 0.0 881
WERAM-Mae-0145 ENSMEUP00000015025.1 Macropus eugenii 54 0.0 871
WERAM-Ocp-0153 ENSOPRP00000015747.2 Ochotona princeps 51 0.0 857
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 80 0.0 791
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 53 0.0 788
WERAM-Gam-0063 ENSGMOP00000006368.1 Gadus morhua 76 0.0 756
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 69 0.0 756
WERAM-Mim-0022 ENSMICP00000002393.1 Microcebus murinus 69 0.0 669
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 66 0.0 650
WERAM-Vip-0084 ENSVPAP00000007862.1 Vicugna pacos 54 4e-176 616
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 59 9e-160 561
WERAM-Ect-0082 ENSETEP00000009275.1 Echinops telfairi 61 6e-149 526
WERAM-Tub-0137 ENSTBEP00000014805.1 Tupaia belangeri 71 4e-134 476
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 54 2e-133 474
WERAM-Chh-0086 ENSCHOP00000009630.1 Choloepus hoffmanni 49 6e-131 466
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 51 4e-119 427
WERAM-Cis-0060 ENSCSAVP00000013851.1 Ciona savignyi 56 6e-94 343
WERAM-Sem-0010 EFJ19764 Selaginella moellendorffii 43 3e-78 291
Created Date 25-Jun-2016