WERAM Information


Tag Content
WERAM ID WERAM-Gaa-0020
Ensembl Protein ID ENSGACP00000002894.1
Gene Name hdac4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSGACG00000002228.1 ENSGACT00000002904.1 ENSGACP00000002894.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 9.10e-149 495.4 66 963
HDAC Class-I 1.70e-30 107.1 79 927
Organism Gasterosteus aculeatus
Domain Profile
  HDAC Class-II

           class-2.txt  33 ilsrlqeaglle..kleelka.rkatkeelqlvHseehvelletae.klekeelesltv 87 
i + ++++ l+ + ++l++ k +++ l+l H++e++e+ ++ e + ++e+e+++
ENSGACP00000002894.1 66 IAEFQRQHEQLSrqHEVQLQEhVKHQQDLLALKHQQELLEHQRKMEqQHLEQEMEKQQR 124
33333222222201333344414444455566677777777666654555666665443 PP
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeeles...... 84
+glvyd+ m khq++++n+++hpE+++Riq+i+srlqe+gl++++e++++rka++eelq+vHse+hv l++t+ +++l+
ENSGACP00000002894.1 629 TGLVYDSLMQKHQCMCGNTTSHPEHAGRIQSIWSRLQETGLRSHCECIRGRKASLEELQTVHSEAHVLLYGTNP--LRQKLDCsvspmf 715
79***********************************************************************4..34445555599** PP
class-2.txt 85 .......ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkil 166
++vd d+i++e++s++aarlavG+v+elv+kv++gelkngfavvRPPGHHaeest+mGFC+fn+va+aakllqq+l+v+k+l
ENSGACP00000002894.1 716 vrlpcggIGVDNDTIWNEVHSSSAARLAVGSVVELVFKVASGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKVL 804
***************************************************************************************** PP
class-2.txt 167 ivDwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawnggl...mgdaeylaafrevvlpiakeF 252
ivDwDvHhGnGtq++fy dp+vlylSlHRyd+g+ffp gsga+devg+g+g+gfnvN+a++ggl m daeylaafr+vv+pia+eF
ENSGACP00000002894.1 805 IVDWDVHHGNGTQQAFYADPNVLYLSLHRYDDGNFFP--GSGAPDEVGSGAGVGFNVNMAFTGGLeppMSDAEYLAAFRTVVMPIANEF 891
*************************************..************************************************** PP
class-2.txt 253 kPdlvlvsaGfDaaeg..dplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
+Pd+vlvs+GfDa++g plgg+++takc+++lt+ql++laggr+vl+lEGG++l+ai++a+ea+v++Llg
ENSGACP00000002894.1 892 APDVVLVSSGFDAVDGhaPPLGGYKLTAKCFGYLTRQLMGLAGGRLVLALEGGHDLTAICDASEACVSSLLG 963
****************999***************************************************96 PP

  HDAC Class-I

           class-1.txt  40 skkleivkpkkasaeellkfhseeyieflkkvepenaeels.kel 83 
++++++ + k +++ l+ h++e +e+ +k+e+++ e+ + k++
ENSGACP00000002894.1 79 QHEVQLQEHVKHQQDLLALKHQQELLEHQRKMEQQHLEQEMeKQQ 123
222333333333444444556677777777777766654331333 PP
class-1.txt 17 gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenae...elskelkkf.....nvgedcPvfdg 97
+++hp r++ + + + + gl + e ++ +kas eel+++hse+++ + + p ++ ++s + + +v++d + ++
ENSGACP00000002894.1 647 TTSHPEHAGRIQSIWSRLQETGLRSHCECIRGRKASLEELQTVHSEAHVLLYGTN-PLRQKldcSVSPMFVRLpcggiGVDND-TIWNE 733
567899999999999999999************************9998654332.222222234443333331110044444.46677 PP
class-1.txt 98 lfey..cqlitGasleaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgveeafy 180
+++ ++l G+ +e + k+ ++e + a+ G hha s Gfcy n + +a l++ + ++vl +d d+hhG+g ++afy
ENSGACP00000002894.1 734 VHSSsaARLAVGSVVELVFKVASGELKngFAVVRPPG-HHAEESTPMGFCYFNSVAIAAKLLQQrlNVSKVLIVDWDVHHGNGTQQAFY 821
7654115567888899999999987662255555555.*******************988777644678******************** PP
class-1.txt 181 ttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlkdg....idDesyekifksviskvieafePeavvlqcGaDslagD.. 262
+ v+ +s+h+y++ +ffPg+G ++vg + g + vn+ ++ g + D +y + f++v+ ++ + f P++v++ G D++ g
ENSGACP00000002894.1 822 ADPNVLYLSLHRYDDgNFFPGSGAPDEVGSGAGVGFNVNMAFTGGleppMSDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVDGHap 910
*************9746***********************98887222257*********************************87533 PP
class-1.txt 263 rlgefnlsikghaecvk 279
+lg ++l+ k ++ +
ENSGACP00000002894.1 911 PLGGYKLTAKCFGYLTR 927
8*******999887655 PP

Protein Sequence
(Fasta)
SVDVSSAALP MQVPPTTTAI LPMDLRVVTG GAEALTCRSR PTDQPELQQE LVTLKHKQQL 60
QRQLLIAEFQ RQHEQLSRQH EVQLQEHVKH QQDLLALKHQ QELLEHQRKM EQQHLEQEME 120
KQQREHKLLQ LKNKERGQES AVASTEVKMR LQEFVLNKKK ALAQRSLNHR LPSDPRFWYG 180
KTQHSSLDQS SPPQTALSAY THPMLGTYDS KDDFPLRKTA SEPNLKLRSR LKQKVTERRS 240
SPLLRRKDGP ITTAKKRSLD VAESACNSAP GSGPSSPNNS SSNIPCENGV NISCSPGEAS 300
LLQRLAAREG SVSQLSLYTS PSLPNITLGL PATGQASSVG SVHQDGESRL ALPALQQGIP 360
LTRPFLPTAH LPSYLASSAL DREGGGGGVA GHNPLLQHMV LMEQSHNSMG LFFGLAGLPL 420
PSPSVSKLAR GHRPLGRTQS APLPQQQCGQ AQALQQLVVQ QQHQQFLEKH KQQFQQQQHI 480
INKASSSASG PARQHQSHPE ETEEELREHQ GLSLSSLSAS CSASAQDTGP LRGLVIKQEP 540
SDPQEQQQEE REKMERLVEQ DFLFRQQQAL LLEQQRIHQL RNYQASMEAA GLSVSFAGHR 600
PLSRAQSSPA SASFPMVVQE PPTKPRFTTG LVYDSLMQKH QCMCGNTTSH PEHAGRIQSI 660
WSRLQETGLR SHCECIRGRK ASLEELQTVH SEAHVLLYGT NPLRQKLDCS VSPMFVRLPC 720
GGIGVDNDTI WNEVHSSSAA RLAVGSVVEL VFKVASGELK NGFAVVRPPG HHAEESTPMG 780
FCYFNSVAIA AKLLQQRLNV SKVLIVDWDV HHGNGTQQAF YADPNVLYLS LHRYDDGNFF 840
PGSGAPDEVG SGAGVGFNVN MAFTGGLEPP MSDAEYLAAF RTVVMPIANE FAPDVVLVSS 900
GFDAVDGHAP PLGGYKLTAK CFGYLTRQLM GLAGGRLVLA LEGGHDLTAI CDASEACVSS 960
LLGNELDPIP EEVLQQIPNA NAVRSMEKVL EIHNKYWRSL QRSASTLGCS LSEALRRDAE 1020
EAETVSAMAS LSVANKLVGK RAEEEPMEEE ATM 1053
Nucleotide Sequence
(Fasta)
TCAGTGGACG TGAGCTCGGC AGCGCTGCCC ATGCAGGTGC CCCCCACCAC CACAGCCATC 60
CTGCCAATGG ACCTGCGCGT CGTAACGGGG GGAGCCGAGG CTCTGACCTG TCGGTCTCGT 120
CCCACAGATC AGCCGGAGCT GCAGCAGGAG CTGGTGACGC TCAAACACAA GCAGCAGCTC 180
CAGCGGCAGC TCCTGATCGC CGAGTTCCAG AGGCAGCACG AGCAGCTGTC GCGACAACAT 240
GAGGTCCAGC TGCAGGAGCA TGTCAAGCAC CAACAGGATT TACTGGCACT CAAGCACCAA 300
CAGGAGCTGT TGGAGCACCA GAGGAAGATG GAGCAGCAGC ATCTCGAGCA GGAGATGGAG 360
AAGCAGCAGC GCGAACACAA ACTCCTACAG CTGAAAAACA AGGAGCGGGG ACAAGAGAGT 420
GCAGTGGCCA GCACAGAGGT TAAGATGCGC CTTCAGGAGT TTGTCCTGAA CAAGAAAAAG 480
GCCCTGGCTC AGCGAAGCCT CAACCACCGT CTGCCCAGCG ACCCGCGCTT TTGGTATGGA 540
AAAACCCAGC ACAGCTCTTT GGACCAGAGT TCTCCTCCCC AAACAGCATT GTCAGCGTAC 600
ACCCACCCGA TGCTGGGCAC ATACGACTCA AAAGACGACT TCCCCCTCCG CAAAACAGCC 660
TCAGAGCCCA ACCTGAAGCT TCGCTCCCGG CTAAAGCAGA AGGTGACGGA GCGCCGCAGC 720
AGCCCTCTCC TCCGGAGGAA AGATGGCCCC ATCACTACCG CCAAGAAGCG CTCCCTCGAC 780
GTGGCTGAGT CCGCATGCAA CAGCGCACCG GGCTCCGGTC CCAGCTCCCC CAACAACAGC 840
TCCAGTAACA TCCCCTGTGA GAACGGGGTA AATATCTCCT GCAGCCCAGG AGAGGCCTCC 900
CTGCTTCAGA GGTTGGCTGC AAGGGAGGGT TCAGTCAGCC AGCTGTCTCT CTACACCTCC 960
CCTTCTCTGC CCAACATCAC CCTGGGACTG CCAGCCACGG GGCAGGCCAG CTCTGTGGGG 1020
TCAGTACACC AAGATGGCGA GAGTCGTCTG GCGCTGCCCG CGCTACAGCA GGGGATTCCT 1080
CTGACCCGTC CCTTCCTGCC CACGGCCCAC CTGCCTTCCT ACTTGGCGTC CTCGGCTCTG 1140
GACAGGGAGG GGGGCGGAGG GGGCGTGGCT GGTCACAACC CCCTTCTCCA ACACATGGTG 1200
CTGATGGAGC AGAGCCACAA TTCAATGGGT CTCTTCTTTG GTCTGGCCGG CCTCCCGCTG 1260
CCGTCCCCCT CCGTCTCCAA ACTTGCCCGT GGGCACCGCC CCCTTGGCAG AACCCAGTCG 1320
GCCCCTCTCC CCCAGCAGCA ATGTGGACAG GCCCAGGCCC TGCAGCAGCT GGTGGTCCAG 1380
CAGCAACACC AGCAGTTCCT GGAGAAACAC AAACAGCAGT TCCAACAGCA GCAGCACATC 1440
ATCAACAAGG CGAGCTCCAG CGCCTCGGGC CCGGCCAGGC AGCACCAGAG TCACCCTGAG 1500
GAGACGGAGG AGGAGCTCAG GGAGCACCAG GGGCTCTCCC TTTCATCCTT GTCAGCCTCT 1560
TGTTCGGCGT CGGCGCAGGA TACGGGGCCT CTGCGAGGGC TGGTCATCAA GCAGGAGCCC 1620
TCGGACCCCC AGGAGCAGCA GCAGGAGGAG AGGGAGAAGA TGGAGCGACT AGTCGAGCAG 1680
GACTTCCTGT TCCGACAGCA GCAAGCTCTG CTCTTGGAGC AGCAGCGGAT CCACCAGCTG 1740
AGGAACTACC AAGCCTCCAT GGAAGCAGCC GGGTTGTCGG TGAGCTTCGC CGGACACCGT 1800
CCCCTCTCCA GAGCCCAGTC GTCCCCAGCC TCCGCCTCCT TCCCCATGGT GGTTCAGGAG 1860
CCGCCCACCA AGCCTCGATT TACAACAGGC CTGGTGTATG ACTCTTTGAT GCAGAAGCAC 1920
CAGTGTATGT GCGGCAACAC CACCAGCCAC CCGGAGCACG CTGGACGAAT CCAGAGTATC 1980
TGGTCCCGCC TACAGGAAAC TGGCCTCAGG TCGCACTGCG AGTGTATCCG CGGGAGGAAA 2040
GCCTCGCTGG AGGAGTTACA GACGGTCCAC TCTGAAGCCC ACGTCCTGCT CTACGGAACC 2100
AACCCGCTGC GGCAGAAACT GGACTGTTCA GTGAGTCCCA TGTTTGTGCG GTTACCGTGC 2160
GGAGGCATAG GGGTGGACAA CGACACCATT TGGAACGAGG TGCATTCGTC CAGTGCGGCT 2220
CGTCTGGCCG TCGGCTCGGT GGTGGAGCTG GTGTTCAAAG TAGCGTCGGG GGAGCTGAAG 2280
AACGGTTTCG CTGTAGTTCG ACCACCTGGA CACCACGCTG AGGAGAGCAC GCCTATGGGC 2340
TTCTGTTACT TCAACTCGGT CGCCATAGCA GCCAAGCTGC TGCAGCAGAG ACTCAATGTC 2400
AGCAAAGTCC TCATCGTGGA CTGGGATGTT CACCACGGCA ATGGCACCCA GCAGGCCTTC 2460
TACGCAGACC CCAACGTTCT CTACCTTTCA CTGCATCGCT ACGACGATGG GAACTTCTTC 2520
CCCGGCAGCG GAGCGCCCGA CGAGGTGGGC AGTGGAGCGG GTGTAGGCTT CAACGTGAAC 2580
ATGGCCTTCA CTGGAGGACT GGAGCCTCCC ATGAGTGACG CAGAGTACCT GGCTGCTTTT 2640
AGGACGGTGG TTATGCCTAT TGCCAACGAG TTCGCCCCAG ACGTGGTTCT GGTATCGTCG 2700
GGCTTCGATG CGGTGGACGG ACACGCCCCG CCCCTCGGAG GATACAAGCT GACAGCCAAA 2760
TGCTTCGGCT ACCTGACCAG GCAGCTGATG GGTCTGGCAG GCGGTCGGCT GGTGCTCGCC 2820
CTGGAGGGAG GTCACGACCT CACGGCCATA TGTGATGCCT CCGAAGCCTG CGTCTCTTCT 2880
CTGCTTGGCA ACGAGTTGGA CCCCATTCCT GAAGAGGTGC TGCAACAGAT ACCAAATGCC 2940
AACGCTGTCC GCTCTATGGA GAAGGTTCTT GAAATACACA ATAAATACTG GCGCTCGCTG 3000
CAGCGCTCCG CCTCCACACT GGGCTGCTCG CTGAGCGAAG CCCTGCGGCG GGACGCCGAG 3060
GAGGCCGAGA CCGTGTCCGC CATGGCCTCG CTGTCCGTCG CCAACAAGCT CGTTGGAAAG 3120
AGGGCTGAAG AGGAACCCAT GGAAGAGGAA GCTACCATGT AA 3163
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Tar-0063 ENSTRUP00000012899.1 Takifugu rubripes 85 0.0 1506
WERAM-Orn-0049 ENSONIP00000005635.1 Oreochromis niloticus 83 0.0 1498
WERAM-Pof-0029 ENSPFOP00000001978.1 Poecilia formosa 81 0.0 1492
WERAM-Xim-0022 ENSXMAP00000002092.1 Xiphophorus maculatus 83 0.0 1492
WERAM-Ten-0103 ENSTNIP00000011743.1 Tetraodon nigroviridis 82 0.0 1489
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 80 0.0 1456
WERAM-Dar-0198 ENSDARP00000131327.1 Danio rerio 77 0.0 1404
WERAM-Leo-0082 ENSLOCP00000011105.1 Lepisosteus oculatus 75 0.0 1392
WERAM-Gam-0063 ENSGMOP00000006368.1 Gadus morhua 80 0.0 1374
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 70 0.0 1285
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 70 0.0 1275
WERAM-Myl-0159 ENSMLUP00000013297.2 Myotis lucifugus 70 0.0 1271
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 70 0.0 1267
WERAM-Mup-0001 ENSMPUP00000000123.1 Mustela putorius furo 71 0.0 1264
WERAM-Fec-0140 ENSFCAP00000013207.3 Felis catus 72 0.0 1258
WERAM-Aim-0131 ENSAMEP00000011965.1 Ailuropoda melanoleuca 70 0.0 1257
WERAM-Pat-0104 ENSPTRP00000022412.3 Pan troglodytes 70 0.0 1255
WERAM-Cap-0143 ENSCPOP00000011770.2 Cavia porcellus 69 0.0 1254
WERAM-Hos-0025 ENSP00000264606.3 Homo sapiens 69 0.0 1253
WERAM-Mum-0077 ENSMUSP00000008995.8 Mus musculus 70 0.0 1253
WERAM-Bot-0159 ENSBTAP00000023621.5 Bos taurus 71 0.0 1250
WERAM-Chs-0068 ENSCSAP00000002314.1 Chlorocebus sabaeus 69 0.0 1248
WERAM-Ran-0135 ENSRNOP00000027622.5 Rattus norvegicus 70 0.0 1246
WERAM-Ict-0095 ENSSTOP00000009983.2 Ictidomys tridecemlineatus 70 0.0 1243
WERAM-Anc-0099 ENSACAP00000009498.3 Anolis carolinensis 66 0.0 1233
WERAM-Caf-0133 ENSCAFP00000018541.3 Canis familiaris 70 0.0 1227
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 68 0.0 1220
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 70 0.0 1213
WERAM-Dan-0037 ENSDNOP00000003826.3 Dasypus novemcinctus 68 0.0 1194
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 67 0.0 1189
WERAM-Asm-0146 ENSAMXP00000013789.1 Astyanax mexicanus 68 0.0 1189
WERAM-Gog-0157 ENSGGOP00000013985.2 Gorilla gorilla 66 0.0 1177
WERAM-Otg-0061 ENSOGAP00000004404.2 Otolemur garnettii 67 0.0 1159
WERAM-Mam-0041 ENSMMUP00000007984.2 Macaca mulatta 66 0.0 1154
WERAM-Poa-0116 ENSPPYP00000014905.2 Pongo abelii 66 0.0 1153
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 72 0.0 1144
WERAM-Dio-0038 ENSDORP00000004330.1 Dipodomys ordii 60 0.0 1012
WERAM-Loa-0107 ENSLAFP00000009167.2 Loxodonta africana 85 0.0 848
WERAM-Paa-0012 ENSPANP00000003104.1 Papio anubis 74 0.0 843
WERAM-Lac-0062 ENSLACP00000008432.1 Latimeria chalumnae 83 0.0 840
WERAM-Pes-0174 ENSPSIP00000020522.1 Pelodiscus sinensis 84 0.0 839
WERAM-Caj-0101 ENSCJAP00000017313.2 Callithrix jacchus 73 0.0 837
WERAM-Sus-0169 ENSSSCP00000025173.1 Sus scrofa 85 0.0 835
WERAM-Ova-0200 ENSOARP00000020106.1 Ovis aries 83 0.0 815
WERAM-Tut-0038 ENSTTRP00000002947.1 Tursiops truncatus 85 0.0 745
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 69 0.0 684
WERAM-Ptv-0156 ENSPVAP00000012934.1 Pteropus vampyrus 71 0.0 678
WERAM-Orc-0142 ENSOCUP00000012429.3 Oryctolagus cuniculus 68 0.0 660
WERAM-Mod-0095 ENSMODP00000032765.2 Monodelphis domestica 70 0.0 659
WERAM-Sah-0025 ENSSHAP00000002837.1 Sarcophilus harrisii 69 0.0 659
WERAM-Nol-0183 ENSNLEP00000020216.1 Nomascus leucogenys 67 0.0 657
WERAM-Prc-0092 ENSPCAP00000008303.1 Procavia capensis 70 0.0 656
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 67 0.0 654
WERAM-Eqc-0153 ENSECAP00000016533.1 Equus caballus 67 0.0 654
WERAM-Ocp-0087 ENSOPRP00000007869.2 Ochotona princeps 70 0.0 652
WERAM-Mae-0085 ENSMEUP00000008564.1 Macropus eugenii 67 5e-178 622
WERAM-Mim-0022 ENSMICP00000002393.1 Microcebus murinus 68 4e-176 616
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 71 9e-176 615
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 64 1e-168 591
WERAM-Vip-0084 ENSVPAP00000007862.1 Vicugna pacos 71 9e-158 555
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 58 6e-154 542
WERAM-Ect-0082 ENSETEP00000009275.1 Echinops telfairi 62 8e-148 522
WERAM-Tub-0137 ENSTBEP00000014805.1 Tupaia belangeri 69 8e-128 456
WERAM-Chh-0086 ENSCHOP00000009630.1 Choloepus hoffmanni 51 4e-126 450
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 51 2e-124 444
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 49 2e-118 424
WERAM-Cis-0060 ENSCSAVP00000013851.1 Ciona savignyi 53 6e-87 320
WERAM-Sem-0022 EFJ08599 Selaginella moellendorffii 48 7e-82 303
WERAM-Brr-0181 Bra035942.1-P Brassica rapa 44 2e-78 291
WERAM-Bro-0168 Bo9g014470.1 Brassica oleracea 44 3e-78 291
Created Date 25-Jun-2016