WERAM Information


Tag Content
WERAM ID WERAM-Dio-0038
Ensembl Protein ID ENSDORP00000004330.1
Gene Name Hdac4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSDORG00000004625.1 ENSDORT00000004625.1 ENSDORP00000004330.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 7.50e-96 320.7 94 951
HDAC Class-I 1.30e-26 93.6 114 952
Organism Dipodomys ordii
Domain Profile
  HDAC Class-II

           class-2.txt  10 mlkhqale.enkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeelesltvd 88 
+ +h+ l+ +++++ E+ + q++l + ++++lle+ +l+ r+ +++el++ H e+ +++l+++ek +++ ++s++v+
ENSDORP00000004330.1 94 QRQHEQLSrQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLE-RHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVK 172
455555440445567889999999999999999999988886.66778899****9999999999998888888775444 PP
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeeles...... 84
+glvyd+ mlkhq++++n+++hpE+++Riq+i+srlqe+gl++k+e
ENSDORP00000004330.1 654 TGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRSKCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXxxxxsl 742
79*********************************************999887777776666444444444433222222222456678 PP
class-2.txt 85 ...........ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkv 162
++vdsd+i++e++s+ aarlavG+v+elv+kv++gelk GFC+fn+vavaakllq +l+v
ENSDORP00000004330.1 743 tsvfvrlpcggVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVVTGELKXXXXXXXXXXXXXXXXXXXGFCYFNSVAVAAKLLQLRLNV 831
889************************************************************************************** PP
class-2.txt 163 kkilivDwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawnggl...mgdaeylaafrevvlpi 248
+kilivDwDvHhGnGtq++fy+dp+vly+SlHRyd+g+ffp gsga+devg+g+g+gf+vN+a++ggl mgd+eylaafr vv+pi
ENSDORP00000004330.1 832 SKILIVDWDVHHGNGTQQAFYSDPSVLYVSLHRYDDGNFFP--GSGAPDEVGTGPGVGFTVNMAFTGGLdppMGDTEYLAAFRAVVMPI 918
*****************************************..********************************************** PP
class-2.txt 249 akeFkPdlvlvsaGfDaaeg..dplgglsvtak 279
a+eF+Pd+vlvs+GfDa+eg +plgg++++ak
ENSDORP00000004330.1 919 ANEFAPDVVLVSSGFDAVEGhpTPLGGYNLSAK 951
********************99********987 PP

  HDAC Class-I

           class-1.txt  29 ltheLvlnyglskkleivk..pkkasaeellkfhseeyieflkkvepenae.....elskelkkfnvg 89 
+e++ + ++ le + ++ + +el k h+e+ ++ lk+ e+ +++ e++ +l++f ++
ENSDORP00000004330.1 114 QQQEMLAMKHQQELLEHQRklERHRQEQELEKQHREQKLQQLKNKEKGKESavastEVKMKLQEFVLN 181
33332222222222222220134556789999999999999999988877733333333455666555 PP
class-1.txt 140 sGfcyvnDivla..ilellkkhkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlkdgi 225
Gfcy n + +a +l+l+ + +++l +d d+hhG+g ++afy v+ vs+h+y++ +ffPg+G ++vg++ g ++vn+ ++ g+
ENSDORP00000004330.1 810 XGFCYFNSVAVAakLLQLRLNVSKILIVDWDVHHGNGTQQAFYSDPSVLYVSLHRYDDgNFFPGSGAPDEVGTGPGVGFTVNMAFTGGL 898
7*******988733688999************************************9746************************99998 PP
class-1.txt 226 d....DesyekifksviskvieafePeavvlqcGaDslagD..rlgefnlsikg 273
d D++y + f+ v+ ++ + f P++v++ G D++ g +lg +nls k
ENSDORP00000004330.1 899 DppmgDTEYLAAFRAVVMPIANEFAPDVVLVSSGFDAVEGHptPLGGYNLSAKX 952
766669********************************99633699***99875 PP

Protein Sequence
(Fasta)
MSSQSHPDGL SGRDQPLELL NPARVNHMPS SVDVATALPL QVAPTAVPMD LRLDRPFPLP 60
VAEPALREQQ LQQELLALKQ KQQIQRQILI AEFQRQHEQL SRQHEAQLHE HIKQQQEMLA 120
MKHQQELLEH QRKLERHRQE QELEKQHREQ KLQQLKNKEK GKESAVASTE VKMKLQEFVL 180
NKKKALAHRN LNHCISSDPR YWYGKTQHSS LDQSSPPQSG VSASYNHPVL GMYDAKDDFP 240
LRKTASEPNL KLRSRLKQKV AERRSSPLLR RKDGPVVTAL KKRPLDVTDS ACSSAPGSGP 300
SSPNSSSGNV STENGIAPAV PSIPAETSLA HRLVTREGSV APLPLYTSPS LPNITLGLPA 360
TGPSAGTASQ PDAERLALPA LQQRISLFPG THLAPFLGAS PLEREGGAPH SPLLQHMVLL 420
EPPPAQTPLV TGLGALPLHA QPLVSADRLS PSVHKLRQHR PLGRTQSAPL PQSAQALQHL 480
VIQQQHQQFL EKHKQQFQQQ QLHLSKIIPK PSEPGRQPES HPEETEEELR EHQALLDEPF 540
LDRPPGQKEA HPLASIQVKQ EPIESDEEEA ESVREAEQGQ RPPTEQELLF RQQALLLEQQ 600
RIHQLRNFQA SMEAAGIPVS FGSHRPLSRA QSSPASATFP MSVQEPSTKP RFTTGLVYDT 660
LMLKHQCTCG NTNSHPEHAG RIQSIWSRLQ ETGLRSKCEX XXXXXXXXXX XXXXXXXXXX 720
XXXXXXXXXX XXXXXXXXXX SLTSVFVRLP CGGVGVDSDT IWNEVHSSGA ARLAVGCVVE 780
LVFKVVTGEL KXXXXXXXXX XXXXXXXXXX GFCYFNSVAV AAKLLQLRLN VSKILIVDWD 840
VHHGNGTQQA FYSDPSVLYV SLHRYDDGNF FPGSGAPDEV GTGPGVGFTV NMAFTGGLDP 900
PMGDTEYLAA FRAVVMPIAN EFAPDVVLVS SGFDAVEGHP TPLGGYNLSA KXXXXXXXXX 960
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLEPL SEKVLQQRPN ANAVRSMEKV 1020
MEIHSKHWRC LQRLASTVGH SLTEAQKCES EEAETVTAMA SLSVGVKPAE KRPDEELMEE 1080
EPPL 1084
Nucleotide Sequence
(Fasta)
ATGAGCTCCC AAAGCCATCC AGATGGACTT TCTGGCCGAG ACCAGCCACT GGAGCTGCTG 60
AACCCTGCCC GAGTGAACCA CATGCCCAGC TCGGTGGATG TGGCCACAGC ACTGCCTCTG 120
CAAGTAGCCC CCACAGCGGT GCCCATGGAC CTGCGCCTGG ACCGCCCGTT CCCGCTGCCC 180
GTGGCGGAGC CGGCGCTGCG GGAGCAGCAG CTGCAGCAGG AGCTCCTGGC CCTGAAGCAG 240
AAGCAGCAGA TCCAGCGGCA GATCCTCATC GCCGAGTTCC AGCGGCAGCA CGAGCAGCTC 300
TCACGGCAGC ACGAAGCCCA GCTGCACGAG CACATCAAGC AGCAGCAGGA GATGCTGGCT 360
ATGAAGCACC AGCAGGAGCT GCTGGAGCAC CAGCGTAAGC TGGAGCGGCA CCGCCAGGAG 420
CAGGAGCTGG AGAAGCAGCA CCGCGAGCAG AAACTGCAGC AGCTCAAGAA CAAGGAGAAG 480
GGCAAAGAGA GTGCCGTGGC CAGCACTGAG GTGAAGATGA AGCTGCAGGA GTTTGTCCTC 540
AACAAAAAGA AGGCACTAGC CCACCGGAAC CTGAACCACT GCATCTCCAG TGACCCCCGC 600
TACTGGTACG GGAAGACACA GCACAGCTCC CTGGACCAGA GCTCACCTCC TCAGAGTGGG 660
GTGTCAGCTT CCTACAACCA CCCAGTCCTG GGGATGTACG ACGCCAAAGA TGACTTCCCT 720
CTTAGGAAAA CAGCTTCTGA ACCCAACCTG AAACTGCGGT CCAGGCTTAA GCAGAAAGTC 780
GCTGAGAGAC GGAGCAGCCC CCTGTTACGC AGGAAGGACG GACCTGTGGT CACGGCTCTT 840
AAAAAGCGTC CCCTGGATGT CACAGACTCT GCGTGTAGCA GTGCTCCCGG CTCCGGACCC 900
AGCTCGCCCA ATAGCAGCTC TGGCAATGTC AGCACTGAGA ACGGCATCGC ACCCGCAGTG 960
CCCAGCATCC CAGCTGAGAC CAGCTTAGCA CACAGGCTCG TGACTCGAGA AGGCTCTGTC 1020
GCCCCTCTCC CTCTCTACAC GTCGCCATCC TTGCCCAATA TCACCTTAGG ACTTCCTGCC 1080
ACCGGCCCCT CTGCGGGCAC AGCGAGCCAG CCGGACGCAG AGAGGCTCGC TCTCCCAGCC 1140
CTGCAGCAGC GGATCTCCCT GTTCCCCGGC ACCCACCTGG CCCCATTCCT GGGCGCCTCG 1200
CCCCTGGAGC GGGAGGGCGG AGCGCCTCAC AGCCCTCTGC TGCAGCACAT GGTCCTGCTG 1260
GAGCCGCCGC CCGCACAGAC ACCCCTCGTC ACAGGCCTGG GGGCGTTGCC CCTCCACGCA 1320
CAGCCCCTGG TCAGTGCAGA CCGCCTGTCC CCGTCTGTGC ACAAGCTGCG GCAGCACCGC 1380
CCGCTGGGGC GCACGCAGTC GGCGCCCCTG CCACAGAGCG CGCAGGCTCT GCAGCACCTG 1440
GTCATCCAGC AGCAGCACCA GCAGTTCCTG GAGAAGCACA AGCAGCAGTT CCAGCAGCAG 1500
CAGCTGCACC TCAGCAAGAT TATCCCCAAA CCAAGTGAGC CAGGTCGGCA GCCTGAAAGC 1560
CATCCTGAGG AGACCGAGGA GGAGCTCCGA GAGCACCAGG CCCTGCTGGA TGAGCCCTTC 1620
CTCGACCGGC CCCCCGGACA GAAGGAGGCC CACCCATTGG CCAGCATCCA GGTGAAGCAG 1680
GAACCCATTG AGAGTGATGA AGAGGAGGCG GAGTCTGTGC GGGAAGCGGA ACAAGGCCAG 1740
CGCCCACCCA CTGAGCAGGA ACTGCTCTTC AGACAGCAAG CCCTCCTGTT GGAGCAGCAG 1800
CGGATCCACC AGCTGAGGAA CTTCCAGGCG TCCATGGAGG CTGCTGGCAT CCCCGTGTCG 1860
TTCGGCAGCC ACAGGCCTCT GTCTCGGGCA CAGTCGTCTC CAGCCTCCGC CACCTTCCCC 1920
ATGTCAGTCC AGGAGCCATC CACCAAGCCA AGGTTCACCA CAGGCCTTGT GTATGACACG 1980
CTGATGCTAA AGCACCAGTG CACCTGTGGG AACACTAACA GCCACCCTGA GCATGCTGGG 2040
AGGATCCAGA GCATCTGGTC CCGCCTGCAG GAGACAGGCC TGCGCAGCAA GTGTGAGNNN 2100
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 2160
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNGA 2220
TCGCTGACCT CAGTGTTTGT CAGGCTTCCT TGCGGTGGTG TCGGGGTGGA CAGCGACACC 2280
ATATGGAATG AGGTGCACTC ATCAGGGGCG GCCCGCCTTG CAGTGGGGTG CGTGGTGGAG 2340
TTGGTCTTCA AGGTGGTTAC AGGGGAGCTG AAGNNNNNNN NNNNNNNNNN NNNNNNNNNN 2400
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNG GGGTTTTGTT ACTTCAACTC CGTGGCAGTG 2460
GCGGCCAAGC TTCTCCAGCT GAGGCTGAAT GTGAGCAAGA TCCTCATCGT CGACTGGGAT 2520
GTGCACCACG GGAATGGAAC CCAGCAGGCT TTCTACAGTG ACCCCAGTGT GCTCTACGTG 2580
TCCCTGCACC GCTACGACGA CGGGAACTTC TTCCCGGGCA GCGGGGCACC TGATGAGGTG 2640
GGCACAGGGC CAGGAGTGGG CTTCACGGTC AACATGGCTT TCACGGGCGG CCTGGACCCT 2700
CCCATGGGAG ACACAGAGTA CTTAGCAGCC TTCAGAGCCG TGGTCATGCC GATCGCCAAC 2760
GAGTTTGCCC CGGATGTGGT GCTGGTGTCC TCGGGCTTCG ATGCTGTGGA GGGTCACCCG 2820
ACGCCTCTCG GAGGCTACAA CCTGTCTGCC AAATNNNNNN NNNNNNNNNN NNNNNNNNNN 2880
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 2940
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNCT CGAGCCTCTG 3000
TCAGAAAAGG TGTTGCAGCA GAGACCCAAT GCCAATGCTG TCCGCTCCAT GGAGAAAGTC 3060
ATGGAAATCC ACAGCAAGCA CTGGCGCTGC CTGCAGCGCC TCGCCTCCAC CGTGGGCCAT 3120
TCTCTGACGG AGGCGCAGAA GTGCGAGAGT GAAGAGGCCG AGACCGTCAC CGCCATGGCC 3180
TCGCTGTCCG TGGGCGTGAA GCCGGCGGAG AAGAGGCCCG ACGAGGAGCT CATGGAGGAG 3240
GAGCCACCGC TGTAG 3256
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Hos-0025 ENSP00000264606.3 Homo sapiens 83 0.0 1503
WERAM-Pat-0104 ENSPTRP00000022412.3 Pan troglodytes 83 0.0 1502
WERAM-Cap-0143 ENSCPOP00000011770.2 Cavia porcellus 84 0.0 1501
WERAM-Chs-0068 ENSCSAP00000002314.1 Chlorocebus sabaeus 83 0.0 1488
WERAM-Bot-0159 ENSBTAP00000023621.5 Bos taurus 82 0.0 1486
WERAM-Mup-0001 ENSMPUP00000000123.1 Mustela putorius furo 80 0.0 1473
WERAM-Aim-0131 ENSAMEP00000011965.1 Ailuropoda melanoleuca 80 0.0 1469
WERAM-Mum-0077 ENSMUSP00000008995.8 Mus musculus 84 0.0 1462
WERAM-Ran-0135 ENSRNOP00000027622.5 Rattus norvegicus 84 0.0 1459
WERAM-Caf-0133 ENSCAFP00000018541.3 Canis familiaris 80 0.0 1436
WERAM-Myl-0159 ENSMLUP00000013297.2 Myotis lucifugus 82 0.0 1427
WERAM-Ict-0095 ENSSTOP00000009983.2 Ictidomys tridecemlineatus 83 0.0 1424
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 79 0.0 1408
WERAM-Poa-0116 ENSPPYP00000014905.2 Pongo abelii 81 0.0 1404
WERAM-Sus-0169 ENSSSCP00000025173.1 Sus scrofa 81 0.0 1400
WERAM-Fec-0140 ENSFCAP00000013207.3 Felis catus 80 0.0 1390
WERAM-Mam-0041 ENSMMUP00000007984.2 Macaca mulatta 79 0.0 1387
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 79 0.0 1377
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 78 0.0 1375
WERAM-Pes-0174 ENSPSIP00000020522.1 Pelodiscus sinensis 78 0.0 1368
WERAM-Gog-0157 ENSGGOP00000013985.2 Gorilla gorilla 77 0.0 1358
WERAM-Dan-0037 ENSDNOP00000003826.3 Dasypus novemcinctus 79 0.0 1356
WERAM-Loa-0107 ENSLAFP00000009167.2 Loxodonta africana 76 0.0 1325
WERAM-Anc-0099 ENSACAP00000009498.3 Anolis carolinensis 71 0.0 1321
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 76 0.0 1308
WERAM-Lac-0062 ENSLACP00000008432.1 Latimeria chalumnae 73 0.0 1302
WERAM-Otg-0061 ENSOGAP00000004404.2 Otolemur garnettii 77 0.0 1293
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 78 0.0 1272
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 70 0.0 1213
WERAM-Leo-0082 ENSLOCP00000011105.1 Lepisosteus oculatus 70 0.0 1207
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 77 0.0 1196
WERAM-Dar-0198 ENSDARP00000131327.1 Danio rerio 67 0.0 1164
WERAM-Ova-0200 ENSOARP00000020106.1 Ovis aries 72 0.0 1150
WERAM-Orn-0049 ENSONIP00000005635.1 Oreochromis niloticus 63 0.0 1038
WERAM-Ten-0103 ENSTNIP00000011743.1 Tetraodon nigroviridis 62 0.0 1014
WERAM-Asm-0146 ENSAMXP00000013789.1 Astyanax mexicanus 60 0.0 1007
WERAM-Tar-0063 ENSTRUP00000012899.1 Takifugu rubripes 61 0.0 999
WERAM-Xim-0022 ENSXMAP00000002092.1 Xiphophorus maculatus 60 0.0 996
WERAM-Pof-0029 ENSPFOP00000001978.1 Poecilia formosa 60 0.0 984
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 58 0.0 934
WERAM-Gaa-0148 ENSGACP00000019223.1 Gasterosteus aculeatus 57 0.0 872
WERAM-Paa-0012 ENSPANP00000003104.1 Papio anubis 76 0.0 851
WERAM-Caj-0101 ENSCJAP00000017313.2 Callithrix jacchus 76 0.0 846
WERAM-Tut-0038 ENSTTRP00000002947.1 Tursiops truncatus 68 0.0 722
WERAM-Nol-0183 ENSNLEP00000020216.1 Nomascus leucogenys 47 0.0 711
WERAM-Orc-0142 ENSOCUP00000012429.3 Oryctolagus cuniculus 47 0.0 707
WERAM-Mod-0016 ENSMODP00000001749.3 Monodelphis domestica 46 0.0 707
WERAM-Eqc-0153 ENSECAP00000016533.1 Equus caballus 47 0.0 704
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 46 0.0 701
WERAM-Mae-0089 ENSMEUP00000008883.1 Macropus eugenii 81 2e-180 630
WERAM-Ptv-0078 ENSPVAP00000007254.1 Pteropus vampyrus 85 2e-166 584
WERAM-Gam-0063 ENSGMOP00000006368.1 Gadus morhua 70 3e-166 583
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 44 5e-156 549
WERAM-Sah-0025 ENSSHAP00000002837.1 Sarcophilus harrisii 41 3e-154 543
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 53 5e-145 513
WERAM-Ocp-0087 ENSOPRP00000007869.2 Ochotona princeps 52 1e-132 471
WERAM-Prc-0092 ENSPCAP00000008303.1 Procavia capensis 53 2e-132 471
WERAM-Mim-0022 ENSMICP00000002393.1 Microcebus murinus 53 9e-132 469
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 48 1e-114 412
WERAM-Chh-0086 ENSCHOP00000009630.1 Choloepus hoffmanni 57 1e-106 385
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 43 3e-103 374
WERAM-Ect-0068 ENSETEP00000007698.1 Echinops telfairi 51 2e-102 371
WERAM-Vip-0084 ENSVPAP00000007862.1 Vicugna pacos 55 4e-100 363
WERAM-Tub-0137 ENSTBEP00000014805.1 Tupaia belangeri 53 4e-89 327
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 38 4e-80 297
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 37 7e-73 273
WERAM-Cis-0060 ENSCSAVP00000013851.1 Ciona savignyi 42 5e-60 230
WERAM-Thc-0031 EOY22062 Theobroma cacao 35 3e-44 178
WERAM-Brr-0146 Bra029339.1-P Brassica rapa 37 9e-44 176
WERAM-Usm-0012 UM02102P0 Ustilago maydis 48 2e-43 176
Created Date 25-Jun-2016