WERAM Information


Tag Content
WERAM ID WERAM-Bro-0168
Ensembl Protein ID Bo9g014470.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo9g014470 Bo9g014470.1 Bo9g014470.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 5.30e-131 438.1 21 341
HDAC Class-I 2.50e-35 124.1 22 332
Organism Brassica oleracea
Domain Profile
  HDAC Class-II

   class-2.txt   2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsiylesks 98 
+glvyde+m+kh++++++ hpE+p+Ri+ i+++lq ag++++++ l + ka++ +lqlvH+++hv+l+++++++++ + +++++ ++siyl++++
Bo9g014470.1 21 VGLVYDETMCKHDTPHGEA--HPERPDRIRVIWENLQLAGVTQRCVVLGGTKAEDAHLQLVHTKDHVNLVKSSTNKKDYQSDRIASLVNSIYLNRST 115
78***************99..****************************************************9999999***************** PP
class-2.txt 99 ikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeifykdpkvlylS 192
++aa la+G+v+e+++kv+kgel+ gfa+vRPPGHHae+++amGFC+fnnvavaa++l+++ + vkkilivDwDvHhGnGtq++f++dp+vl +S
Bo9g014470.1 116 SEAAYLAAGSVVEVAEKVAKGELDSGFAIVRPPGHHAEADEAMGFCFFNNVAVAASYLLDERPdlgVKKILIVDWDVHHGNGTQKMFWEDPRVLVFS 212
***********************************************************9987788******************************* PP
class-2.txt 193 lHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkqll 289
+HR ++g f+p + g+++ vgeg+gegfn+Nv+w++g +gda+ylaa++++++p+akeF+Pd++l+saGfDaa gdplgg++vt+ +y+ + k+l+
Bo9g014470.1 213 VHRREDGGFYPGGDAGSYNMVGEGPGEGFNINVPWEQGRCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVMLKKLM 309
***********9999********************************************************************************** PP
class-2.txt 290 klaggrvvlvlEGGynlkaiaeaveavvkaLl 321
++a+g++v++lEGGynl++ia+++ a+v++Ll
Bo9g014470.1 310 EFAQGKIVMALEGGYNLDSIAKSSLACVQVLL 341
*******************************8 PP

  HDAC Class-I

   class-1.txt   4 ayaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdgl 98 
+yde++ ++ + g+ hp +p r++++ e + g++++ ++ +ka+ ++l+ +h++++++++k++++++ +++++ ++ + +
Bo9g014470.1 22 GLVYDETMCKHDTphGEAHPERPDRIRVIWENLQLAGVTQRCVVLGGTKAEDAHLQLVHTKDHVNLVKSSTNKK--DYQSDR-IASLVNSIYLNRST 115
556777776655433999***********9999999******************************99877554..444333.34566678888999 PP
class-1.txt 99 feycqlitGasleaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveeafyttdrvmtv 188
e + l +G+ +e a+k+ k+e d ai G hha +ea Gfc+ n++ +a ll + k++l +d d+hhG+g ++ f + rv+
Bo9g014470.1 116 SEAAYLAAGSVVEVAEKVAKGELDsgFAIVRPPG-HHAEADEAMGFCFFNNVAVAASYLLDErpdlgVKKILIVDWDVHHGNGTQKMFWEDPRVLVF 211
99999****************9882245655555.*********************9999752333369**************************** PP
class-1.txt 189 sfhkyge.effPg..tGdlsdvgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfv 281
s+h+ ++ +f+Pg +G+ + vg++ g + +nvP ++g + D y + +++ +v + f+P++++l G D+ gD+lg ++ g++ ++k +
Bo9g014470.1 212 SVHRREDgGFYPGgdAGSYNMVGEGPGEGFNINVPWEQGrCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVMLKKL 308
***9987369**956699*******************99799******************************************************* PP
class-1.txt 282 ksf.nlpllvlGGGGYtlrnvaRc 304
+f + ++++ GGY+l +a+
Bo9g014470.1 309 MEFaQGKIVMALEGGYNLDSIAKS 332
***7778888889*****999975 PP

Protein Sequence
(Fasta)
MNMAGKTSVN GESNGKVHRK VGLVYDETMC KHDTPHGEAH PERPDRIRVI WENLQLAGVT 60
QRCVVLGGTK AEDAHLQLVH TKDHVNLVKS STNKKDYQSD RIASLVNSIY LNRSTSEAAY 120
LAAGSVVEVA EKVAKGELDS GFAIVRPPGH HAEADEAMGF CFFNNVAVAA SYLLDERPDL 180
GVKKILIVDW DVHHGNGTQK MFWEDPRVLV FSVHRREDGG FYPGGDAGSY NMVGEGPGEG 240
FNINVPWEQG RCGDADYLAA WDHILIPVAK EFNPDIILLS AGFDAAIGDP LGGCRVTPYG 300
YSVMLKKLME FAQGKIVMAL EGGYNLDSIA KSSLACVQVL LEDNPIQGSS EEIPFMSTWR 360
VIQAVRKRLC AYWPSLADEL SSKLINQKTP TPIVLTSNSN SEAKDNAHEL LDQLSKLNIE 420
THKVDTKVST SWRSDLSKVD VWYASFGSNM WKPRFLCYIQ GGQVEGMTKP CVGSMDKSPP 480
KGITWGTYPN RLFFGRESTN VWGKGGVAFT NPLTNPNDQT HMCLLEQFND VLFQENGLNV 540
DFASPIFGLT ALQLVEKNGS TPLEADLAPW YGNVVCLGRE GDVPILTMTC TLSVIEKFAS 600
GEVPLSPPAK AYANTLIRGL VEGGIFSEEE AEAYIDDAAS KPLYINGASR F 651
Nucleotide Sequence
(Fasta)
ATGAACATGG CCGGAAAAAC TTCAGTTAAC GGTGAATCAA ATGGGAAAGT ACATCGAAAG 60
GTGGGTCTTG TTTACGACGA GACGATGTGC AAACACGACA CACCTCACGG CGAGGCTCAC 120
CCTGAGCGTC CCGATCGTAT CAGAGTCATC TGGGAGAACC TTCAGCTCGC CGGAGTCACT 180
CAAAGATGTG TGGTTCTTGG TGGTACCAAA GCAGAAGATG CGCATCTCCA ACTGGTTCAC 240
ACAAAGGACC ATGTTAATCT AGTTAAGAGC AGCACAAACA AGAAAGATTA TCAGAGTGAC 300
AGGATTGCTT CACTGGTGAA TTCGATATAT CTGAATAGAA GTACATCTGA AGCTGCATAT 360
CTTGCAGCTG GTTCTGTTGT AGAGGTGGCG GAGAAAGTTG CCAAAGGAGA GTTAGACTCT 420
GGCTTTGCTA TTGTCAGGCC TCCAGGTCAC CATGCTGAGG CAGATGAAGC CATGGGGTTC 480
TGTTTTTTCA ACAATGTTGC AGTCGCTGCT AGTTATCTAC TAGATGAAAG ACCTGATCTA 540
GGTGTCAAGA AGATTCTGAT TGTTGATTGG GATGTCCATC ACGGAAACGG CACGCAGAAG 600
ATGTTCTGGG AAGATCCTCG TGTGCTAGTT TTCTCTGTTC ATAGGCGTGA GGATGGAGGC 660
TTCTATCCAG GAGGTGATGC TGGATCATAT AACATGGTTG GTGAAGGTCC AGGGGAAGGA 720
TTCAACATAA ACGTCCCATG GGAGCAAGGA AGATGTGGAG ATGCAGATTA TCTTGCTGCT 780
TGGGACCATA TCTTGATTCC TGTGGCTAAG GAGTTTAATC CTGATATTAT CTTGTTATCA 840
GCTGGCTTTG ATGCAGCTAT TGGTGATCCA CTTGGTGGTT GTCGTGTTAC ACCATATGGA 900
TATTCAGTTA TGTTGAAGAA GCTGATGGAG TTTGCACAAG GAAAGATTGT GATGGCGTTA 960
GAGGGAGGAT ACAATCTTGA CTCAATTGCT AAATCTTCAC TTGCATGTGT CCAAGTTTTG 1020
CTTGAAGACA ACCCAATTCA AGGTTCTTCT GAAGAAATAC CATTCATGTC CACATGGCGT 1080
GTTATACAAG CTGTACGCAA GAGGCTATGT GCTTATTGGC CTTCACTTGC AGATGAACTA 1140
TCATCAAAGC TGATTAATCA GAAAACTCCT ACTCCAATCG TCCTTACCTC AAACTCCAAC 1200
TCTGAAGCTA AAGACAACGC TCATGAACTC CTGGATCAAC TGTCAAAACT CAACATTGAA 1260
ACACACAAAG TAGATACTAA GGTTTCTACA TCTTGGAGAA GTGATCTCTC AAAAGTTGAC 1320
GTCTGGTATG CCTCTTTCGG ATCCAACATG TGGAAACCAA GGTTCCTTTG CTATATTCAA 1380
GGGGGACAAG TGGAGGGAAT GACAAAGCCG TGTGTTGGTT CAATGGATAA AAGTCCGCCA 1440
AAGGGAATAA CGTGGGGAAC ATATCCAAAC AGGTTATTCT TTGGCCGCGA ATCTACAAAT 1500
GTTTGGGGTA AAGGAGGTGT TGCTTTCACC AATCCCCTTA CTAATCCCAA TGATCAAACT 1560
CACATGTGTC TTCTTGAGCA GTTCAACGAT GTTCTGTTTC AGGAAAATGG CTTGAACGTT 1620
GATTTTGCTT CTCCAATCTT TGGCCTTACT GCTCTGCAGT TAGTAGAGAA GAATGGATCC 1680
ACTCCACTTG AAGCTGATTT GGCTCCTTGG TATGGAAACG TTGTCTGTTT GGGAAGAGAA 1740
GGCGACGTAC CTATACTTAC AATGACTTGC ACACTTTCTG TTATTGAGAA GTTCGCTTCT 1800
GGTGAAGTGC CATTAAGTCC TCCTGCAAAA GCCTATGCCA ACACTTTGAT AAGGGGACTT 1860
GTTGAAGGAG GAATATTCTC TGAAGAAGAA GCTGAAGCTT ACATAGACGA TGCTGCTTCT 1920
AAGCCTCTCT ATATCAATGG AGCTTCACGT TTCTGA 1957
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0181 Bra035942.1-P Brassica rapa 97 0.0 1231
WERAM-Arl-0149 scaffold_802745.1 Arabidopsis lyrata 80 0.0 1009
WERAM-Art-0146 AT5G61060.1 Arabidopsis thaliana 79 0.0 1004
WERAM-Pot-0045 POPTR_0004s09180.1 Populus trichocarpa 64 0.0 824
WERAM-Thc-0031 EOY22062 Theobroma cacao 64 0.0 812
WERAM-Glm-0045 GLYMA05G00460.1 Glycine max 62 0.0 791
WERAM-Viv-0107 VIT_17s0000g07280.t01 Vitis vinifera 63 0.0 788
WERAM-Met-0112 KEH32016 Medicago truncatula 60 0.0 738
WERAM-Mua-0066 GSMUA_Achr4P03250_001 Musa acuminata 59 0.0 728
WERAM-Sol-0055 Solyc03g115150.2.1 Solanum lycopersicum 57 0.0 720
WERAM-Prp-0049 EMJ12067 Prunus persica 67 0.0 712
WERAM-Org-0078 ORGLA07G0164500.1 Oryza glaberrima 54 0.0 694
WERAM-Orgl-0076 OGLUM07G21150.1 Oryza glumaepatula 54 0.0 694
WERAM-Orbr-0087 OB07G26850.1 Oryza brachyantha 55 0.0 693
WERAM-Ori-0088 BGIOSGA026083-PA Oryza indica 54 0.0 693
WERAM-Orni-0078 ONIVA07G19970.1 Oryza nivara 54 0.0 692
WERAM-Ors-0072 OS07T0602200-01 Oryza sativa 54 0.0 692
WERAM-Orr-0082 ORUFI07G22240.1 Oryza rufipogon 54 0.0 692
WERAM-Zem-0143 GRMZM2G457889_P01 Zea mays 55 0.0 692
WERAM-Sei-0109 Si029091m Setaria italica 55 0.0 690
WERAM-Lep-0079 LPERR07G18450.1 Leersia perrieri 54 0.0 690
WERAM-Sob-0036 Sb02g038550.1 Sorghum bicolor 54 0.0 679
WERAM-Tra-0099 Traes_2DS_DFCAF1EA5.1 Triticum aestivum 53 0.0 676
WERAM-Orp-0076 OPUNC07G19850.1 Oryza punctata 54 0.0 666
WERAM-Brd-0010 BRADI1G22240.1 Brachypodium distachyon 52 0.0 647
WERAM-Amt-0091 ERM99985 Amborella trichopoda 54 5e-180 628
WERAM-Aet-0088 EMT31322 Aegilops tauschii 53 2e-177 619
WERAM-Orl-0040 KN538895.1_FGP007 Oryza longistaminata 53 3e-173 606
WERAM-Orb-0079 OBART07G21300.1 Oryza barthii 54 2e-172 603
WERAM-Sem-0010 EFJ19764 Selaginella moellendorffii 50 1e-160 564
WERAM-Tru-0053 TRIUR3_22556-P1 Triticum urartu 44 4e-121 432
WERAM-Hov-0018 MLOC_16422.1 Hordeum vulgare 63 3e-117 419
WERAM-Php-0085 PP1S34_252V6.1 Physcomitrella patens 55 1e-106 384
WERAM-Ran-0201 ENSRNOP00000063689.2 Rattus norvegicus 46 2e-85 314
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 45 2e-83 307
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 44 3e-82 303
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 44 6e-82 302
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 46 1e-81 301
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 45 2e-81 301
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 44 2e-81 300
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 46 4e-81 300
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 45 5e-81 299
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 44 5e-81 299
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 46 7e-81 299
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 44 7e-81 299
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 45 8e-81 298
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 45 2e-80 298
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 44 2e-80 297
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 45 2e-80 297
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 44 2e-80 297
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 41 3e-80 296
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 44 3e-80 296
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 44 3e-80 296
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 44 4e-80 296
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 45 4e-80 296
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 44 5e-80 296
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 44 6e-80 296
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 42 7e-80 295
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 47 5e-79 293
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 42 6e-79 292
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 46 7e-79 292
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 48 8e-79 292
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 42 1e-78 291
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 38 2e-78 291
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 44 2e-78 291
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 48 4e-78 290
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 43 9e-78 288
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 43 1e-77 288
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 47 4e-77 286
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 43 5e-77 286
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 41 5e-77 286
WERAM-Caa-0034 KGT64501 Candida albicans 41 6e-77 286
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 43 7e-77 286
WERAM-Gaga-0067 ENSGALP00000010190.4 Gallus gallus 44 7e-77 285
WERAM-Meg-0108 ENSMGAP00000010913.2 Meleagris gallopavo 44 8e-77 285
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 40 2e-76 284
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 43 2e-76 284
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 42 3e-76 283
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 40 3e-76 283
WERAM-Anp-0061 ENSAPLP00000006782.1 Anas platyrhynchos 44 1e-75 281
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 43 3e-75 280
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 42 5e-75 280
WERAM-Fia-0117 ENSFALP00000010126.1 Ficedula albicollis 40 7e-75 279
WERAM-Sah-0012 ENSSHAP00000001165.1 Sarcophilus harrisii 46 1e-74 278
WERAM-Pes-0124 ENSPSIP00000014863.1 Pelodiscus sinensis 44 3e-74 277
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 42 4e-74 276
WERAM-Kop-0012 CAY68916 Komagataella pastoris 41 6e-74 276
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 41 7e-74 276
WERAM-Usm-0012 UM02102P0 Ustilago maydis 42 8e-74 275
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 43 1e-73 275
WERAM-Tut-0056 ENSTTRP00000004443.1 Tursiops truncatus 47 1e-73 275
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 43 3e-73 273
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 42 4e-73 273
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 42 5e-73 273
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 43 8e-73 272
WERAM-Tas-0021 ENSTSYP00000002661.1 Tarsius syrichta 43 1e-72 272
WERAM-Coi-0028 EAS30926 Coccidioides immitis 41 2e-72 271
WERAM-Tag-0054 ENSTGUP00000003859.1 Taeniopygia guttata 44 2e-72 271
WERAM-Nol-0194 ENSNLEP00000021748.1 Nomascus leucogenys 44 2e-72 270
WERAM-Pat-0040 ENSPTRP00000008320.5 Pan troglodytes 44 3e-72 270
WERAM-Poa-0162 ENSPPYP00000019901.2 Pongo abelii 44 3e-72 270
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 42 4e-72 270
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 41 7e-72 269
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 38 2e-71 267
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 45 3e-71 267
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 39 5e-71 266
WERAM-Gaa-0020 ENSGACP00000002894.1 Gasterosteus aculeatus 44 7e-71 266
WERAM-Osl-0043 ABO96923 Ostreococcus lucimarinus 41 9e-71 265
WERAM-Leo-0130 ENSLOCP00000016135.1 Lepisosteus oculatus 43 3e-70 263
Created Date 25-Jun-2016