Tag |
Content |
WERAM ID |
WERAM-Bro-0168 |
Ensembl Protein ID |
Bo9g014470.1 |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
5.30e-131 |
438.1 |
21 |
341 |
HDAC |
Class-I |
2.50e-35 |
124.1 |
22 |
332 |
|
Organism |
Brassica oleracea |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsiylesks 98 +glvyde+m+kh++++++ hpE+p+Ri+ i+++lq ag++++++ l + ka++ +lqlvH+++hv+l+++++++++ + +++++ ++siyl++++ Bo9g014470.1 21 VGLVYDETMCKHDTPHGEA--HPERPDRIRVIWENLQLAGVTQRCVVLGGTKAEDAHLQLVHTKDHVNLVKSSTNKKDYQSDRIASLVNSIYLNRST 115 78***************99..****************************************************9999999***************** PP class-2.txt 99 ikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeifykdpkvlylS 192 ++aa la+G+v+e+++kv+kgel+ gfa+vRPPGHHae+++amGFC+fnnvavaa++l+++ + vkkilivDwDvHhGnGtq++f++dp+vl +S Bo9g014470.1 116 SEAAYLAAGSVVEVAEKVAKGELDSGFAIVRPPGHHAEADEAMGFCFFNNVAVAASYLLDERPdlgVKKILIVDWDVHHGNGTQKMFWEDPRVLVFS 212 ***********************************************************9987788******************************* PP class-2.txt 193 lHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkqll 289 +HR ++g f+p + g+++ vgeg+gegfn+Nv+w++g +gda+ylaa++++++p+akeF+Pd++l+saGfDaa gdplgg++vt+ +y+ + k+l+ Bo9g014470.1 213 VHRREDGGFYPGGDAGSYNMVGEGPGEGFNINVPWEQGRCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVMLKKLM 309 ***********9999********************************************************************************** PP class-2.txt 290 klaggrvvlvlEGGynlkaiaeaveavvkaLl 321 ++a+g++v++lEGGynl++ia+++ a+v++Ll Bo9g014470.1 310 EFAQGKIVMALEGGYNLDSIAKSSLACVQVLL 341 *******************************8 PP
HDAC Class-I
class-1.txt 4 ayaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdgl 98 +yde++ ++ + g+ hp +p r++++ e + g++++ ++ +ka+ ++l+ +h++++++++k++++++ +++++ ++ + + Bo9g014470.1 22 GLVYDETMCKHDTphGEAHPERPDRIRVIWENLQLAGVTQRCVVLGGTKAEDAHLQLVHTKDHVNLVKSSTNKK--DYQSDR-IASLVNSIYLNRST 115 556777776655433999***********9999999******************************99877554..444333.34566678888999 PP class-1.txt 99 feycqlitGasleaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveeafyttdrvmtv 188 e + l +G+ +e a+k+ k+e d ai G hha +ea Gfc+ n++ +a ll + k++l +d d+hhG+g ++ f + rv+ Bo9g014470.1 116 SEAAYLAAGSVVEVAEKVAKGELDsgFAIVRPPG-HHAEADEAMGFCFFNNVAVAASYLLDErpdlgVKKILIVDWDVHHGNGTQKMFWEDPRVLVF 211 99999****************9882245655555.*********************9999752333369**************************** PP class-1.txt 189 sfhkyge.effPg..tGdlsdvgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfv 281 s+h+ ++ +f+Pg +G+ + vg++ g + +nvP ++g + D y + +++ +v + f+P++++l G D+ gD+lg ++ g++ ++k + Bo9g014470.1 212 SVHRREDgGFYPGgdAGSYNMVGEGPGEGFNINVPWEQGrCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVMLKKL 308 ***9987369**956699*******************99799******************************************************* PP class-1.txt 282 ksf.nlpllvlGGGGYtlrnvaRc 304 +f + ++++ GGY+l +a+ Bo9g014470.1 309 MEFaQGKIVMALEGGYNLDSIAKS 332 ***7778888889*****999975 PP
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Protein Sequence (Fasta) | MNMAGKTSVN GESNGKVHRK VGLVYDETMC KHDTPHGEAH PERPDRIRVI WENLQLAGVT 60 QRCVVLGGTK AEDAHLQLVH TKDHVNLVKS STNKKDYQSD RIASLVNSIY LNRSTSEAAY 120 LAAGSVVEVA EKVAKGELDS GFAIVRPPGH HAEADEAMGF CFFNNVAVAA SYLLDERPDL 180 GVKKILIVDW DVHHGNGTQK MFWEDPRVLV FSVHRREDGG FYPGGDAGSY NMVGEGPGEG 240 FNINVPWEQG RCGDADYLAA WDHILIPVAK EFNPDIILLS AGFDAAIGDP LGGCRVTPYG 300 YSVMLKKLME FAQGKIVMAL EGGYNLDSIA KSSLACVQVL LEDNPIQGSS EEIPFMSTWR 360 VIQAVRKRLC AYWPSLADEL SSKLINQKTP TPIVLTSNSN SEAKDNAHEL LDQLSKLNIE 420 THKVDTKVST SWRSDLSKVD VWYASFGSNM WKPRFLCYIQ GGQVEGMTKP CVGSMDKSPP 480 KGITWGTYPN RLFFGRESTN VWGKGGVAFT NPLTNPNDQT HMCLLEQFND VLFQENGLNV 540 DFASPIFGLT ALQLVEKNGS TPLEADLAPW YGNVVCLGRE GDVPILTMTC TLSVIEKFAS 600 GEVPLSPPAK AYANTLIRGL VEGGIFSEEE AEAYIDDAAS KPLYINGASR F 651Protein Fasta Sequence
>Bo9g014470.1|Class-I|Brassica oleracea MNMAGKTSVNGESNGKVHRKVGLVYDETMCKHDTPHGEAHPERPDRIRVIWENLQLAGVTQRCVVLGGTKAEDAHLQLVHTKDHVNLVKSSTNKKDYQSDRIASLVNSIYLNRSTSEAAYLAAGSVVEVAEKVAKGELDSGFAIVRPPGHHAEADEAMGFCFFNNVAVAASYLLDERPDLGVKKILIVDWDVHHGNGTQKMFWEDPRVLVFSVHRREDGGFYPGGDAGSYNMVGEGPGEGFNINVPWEQGRCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVMLKKLMEFAQGKIVMALEGGYNLDSIAKSSLACVQVLLEDNPIQGSSEEIPFMSTWRVIQAVRKRLCAYWPSLADELSSKLINQKTPTPIVLTSNSNSEAKDNAHELLDQLSKLNIETHKVDTKVSTSWRSDLSKVDVWYASFGSNMWKPRFLCYIQGGQVEGMTKPCVGSMDKSPPKGITWGTYPNRLFFGRESTNVWGKGGVAFTNPLTNPNDQTHMCLLEQFNDVLFQENGLNVDFASPIFGLTALQLVEKNGSTPLEADLAPWYGNVVCLGREGDVPILTMTCTLSVIEKFASGEVPLSPPAKAYANTLIRGLVEGGIFSEEEAEAYIDDAASKPLYINGASRF
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Nucleotide Sequence (Fasta) | ATGAACATGG CCGGAAAAAC TTCAGTTAAC GGTGAATCAA ATGGGAAAGT ACATCGAAAG 60 GTGGGTCTTG TTTACGACGA GACGATGTGC AAACACGACA CACCTCACGG CGAGGCTCAC 120 CCTGAGCGTC CCGATCGTAT CAGAGTCATC TGGGAGAACC TTCAGCTCGC CGGAGTCACT 180 CAAAGATGTG TGGTTCTTGG TGGTACCAAA GCAGAAGATG CGCATCTCCA ACTGGTTCAC 240 ACAAAGGACC ATGTTAATCT AGTTAAGAGC AGCACAAACA AGAAAGATTA TCAGAGTGAC 300 AGGATTGCTT CACTGGTGAA TTCGATATAT CTGAATAGAA GTACATCTGA AGCTGCATAT 360 CTTGCAGCTG GTTCTGTTGT AGAGGTGGCG GAGAAAGTTG CCAAAGGAGA GTTAGACTCT 420 GGCTTTGCTA TTGTCAGGCC TCCAGGTCAC CATGCTGAGG CAGATGAAGC CATGGGGTTC 480 TGTTTTTTCA ACAATGTTGC AGTCGCTGCT AGTTATCTAC TAGATGAAAG ACCTGATCTA 540 GGTGTCAAGA AGATTCTGAT TGTTGATTGG GATGTCCATC ACGGAAACGG CACGCAGAAG 600 ATGTTCTGGG AAGATCCTCG TGTGCTAGTT TTCTCTGTTC ATAGGCGTGA GGATGGAGGC 660 TTCTATCCAG GAGGTGATGC TGGATCATAT AACATGGTTG GTGAAGGTCC AGGGGAAGGA 720 TTCAACATAA ACGTCCCATG GGAGCAAGGA AGATGTGGAG ATGCAGATTA TCTTGCTGCT 780 TGGGACCATA TCTTGATTCC TGTGGCTAAG GAGTTTAATC CTGATATTAT CTTGTTATCA 840 GCTGGCTTTG ATGCAGCTAT TGGTGATCCA CTTGGTGGTT GTCGTGTTAC ACCATATGGA 900 TATTCAGTTA TGTTGAAGAA GCTGATGGAG TTTGCACAAG GAAAGATTGT GATGGCGTTA 960 GAGGGAGGAT ACAATCTTGA CTCAATTGCT AAATCTTCAC TTGCATGTGT CCAAGTTTTG 1020 CTTGAAGACA ACCCAATTCA AGGTTCTTCT GAAGAAATAC CATTCATGTC CACATGGCGT 1080 GTTATACAAG CTGTACGCAA GAGGCTATGT GCTTATTGGC CTTCACTTGC AGATGAACTA 1140 TCATCAAAGC TGATTAATCA GAAAACTCCT ACTCCAATCG TCCTTACCTC AAACTCCAAC 1200 TCTGAAGCTA AAGACAACGC TCATGAACTC CTGGATCAAC TGTCAAAACT CAACATTGAA 1260 ACACACAAAG TAGATACTAA GGTTTCTACA TCTTGGAGAA GTGATCTCTC AAAAGTTGAC 1320 GTCTGGTATG CCTCTTTCGG ATCCAACATG TGGAAACCAA GGTTCCTTTG CTATATTCAA 1380 GGGGGACAAG TGGAGGGAAT GACAAAGCCG TGTGTTGGTT CAATGGATAA AAGTCCGCCA 1440 AAGGGAATAA CGTGGGGAAC ATATCCAAAC AGGTTATTCT TTGGCCGCGA ATCTACAAAT 1500 GTTTGGGGTA AAGGAGGTGT TGCTTTCACC AATCCCCTTA CTAATCCCAA TGATCAAACT 1560 CACATGTGTC TTCTTGAGCA GTTCAACGAT GTTCTGTTTC AGGAAAATGG CTTGAACGTT 1620 GATTTTGCTT CTCCAATCTT TGGCCTTACT GCTCTGCAGT TAGTAGAGAA GAATGGATCC 1680 ACTCCACTTG AAGCTGATTT GGCTCCTTGG TATGGAAACG TTGTCTGTTT GGGAAGAGAA 1740 GGCGACGTAC CTATACTTAC AATGACTTGC ACACTTTCTG TTATTGAGAA GTTCGCTTCT 1800 GGTGAAGTGC CATTAAGTCC TCCTGCAAAA GCCTATGCCA ACACTTTGAT AAGGGGACTT 1860 GTTGAAGGAG GAATATTCTC TGAAGAAGAA GCTGAAGCTT ACATAGACGA TGCTGCTTCT 1920 AAGCCTCTCT ATATCAATGG AGCTTCACGT TTCTGA
1957Nucleotide Fasta Sequence
>Bo9g014470.1|Class-I|Brassica oleracea ATGAACATGGCCGGAAAAACTTCAGTTAACGGTGAATCAAATGGGAAAGTACATCGAAAGGTGGGTCTTGTTTACGACGAGACGATGTGCAAACACGACACACCTCACGGCGAGGCTCACCCTGAGCGTCCCGATCGTATCAGAGTCATCTGGGAGAACCTTCAGCTCGCCGGAGTCACTCAAAGATGTGTGGTTCTTGGTGGTACCAAAGCAGAAGATGCGCATCTCCAACTGGTTCACACAAAGGACCATGTTAATCTAGTTAAGAGCAGCACAAACAAGAAAGATTATCAGAGTGACAGGATTGCTTCACTGGTGAATTCGATATATCTGAATAGAAGTACATCTGAAGCTGCATATCTTGCAGCTGGTTCTGTTGTAGAGGTGGCGGAGAAAGTTGCCAAAGGAGAGTTAGACTCTGGCTTTGCTATTGTCAGGCCTCCAGGTCACCATGCTGAGGCAGATGAAGCCATGGGGTTCTGTTTTTTCAACAATGTTGCAGTCGCTGCTAGTTATCTACTAGATGAAAGACCTGATCTAGGTGTCAAGAAGATTCTGATTGTTGATTGGGATGTCCATCACGGAAACGGCACGCAGAAGATGTTCTGGGAAGATCCTCGTGTGCTAGTTTTCTCTGTTCATAGGCGTGAGGATGGAGGCTTCTATCCAGGAGGTGATGCTGGATCATATAACATGGTTGGTGAAGGTCCAGGGGAAGGATTCAACATAAACGTCCCATGGGAGCAAGGAAGATGTGGAGATGCAGATTATCTTGCTGCTTGGGACCATATCTTGATTCCTGTGGCTAAGGAGTTTAATCCTGATATTATCTTGTTATCAGCTGGCTTTGATGCAGCTATTGGTGATCCACTTGGTGGTTGTCGTGTTACACCATATGGATATTCAGTTATGTTGAAGAAGCTGATGGAGTTTGCACAAGGAAAGATTGTGATGGCGTTAGAGGGAGGATACAATCTTGACTCAATTGCTAAATCTTCACTTGCATGTGTCCAAGTTTTGCTTGAAGACAACCCAATTCAAGGTTCTTCTGAAGAAATACCATTCATGTCCACATGGCGTGTTATACAAGCTGTACGCAAGAGGCTATGTGCTTATTGGCCTTCACTTGCAGATGAACTATCATCAAAGCTGATTAATCAGAAAACTCCTACTCCAATCGTCCTTACCTCAAACTCCAACTCTGAAGCTAAAGACAACGCTCATGAACTCCTGGATCAACTGTCAAAACTCAACATTGAAACACACAAAGTAGATACTAAGGTTTCTACATCTTGGAGAAGTGATCTCTCAAAAGTTGACGTCTGGTATGCCTCTTTCGGATCCAACATGTGGAAACCAAGGTTCCTTTGCTATATTCAAGGGGGACAAGTGGAGGGAATGACAAAGCCGTGTGTTGGTTCAATGGATAAAAGTCCGCCAAAGGGAATAACGTGGGGAACATATCCAAACAGGTTATTCTTTGGCCGCGAATCTACAAATGTTTGGGGTAAAGGAGGTGTTGCTTTCACCAATCCCCTTACTAATCCCAATGATCAAACTCACATGTGTCTTCTTGAGCAGTTCAACGATGTTCTGTTTCAGGAAAATGGCTTGAACGTTGATTTTGCTTCTCCAATCTTTGGCCTTACTGCTCTGCAGTTAGTAGAGAAGAATGGATCCACTCCACTTGAAGCTGATTTGGCTCCTTGGTATGGAAACGTTGTCTGTTTGGGAAGAGAAGGCGACGTACCTATACTTACAATGACTTGCACACTTTCTGTTATTGAGAAGTTCGCTTCTGGTGAAGTGCCATTAAGTCCTCCTGCAAAAGCCTATGCCAACACTTTGATAAGGGGACTTGTTGAAGGAGGAATATTCTCTGAAGAAGAAGCTGAAGCTTACATAGACGATGCTGCTTCTAAGCCTCTCTATATCAATGGAGCTTCACGTTTCTGA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |