WERAM Information


Tag Content
WERAM ID WERAM-Sol-0055
Ensembl Protein ID Solyc03g115150.2.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Solyc03g115150.2 Solyc03g115150.2.1 Solyc03g115150.2.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 6.00e-126 420.7 9 329
HDAC Class-I 9.40e-36 124.7 11 319
Organism Solanum lycopersicum
Domain Profile
  HDAC Class-II

         class-2.txt   2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeelesltvdsdsi 92 
+gl+yd++m kh lee k hpE+++Riq+i+++l+++g++++++ + +++a++e++ lvH+++h++ +++ +++e+ ++++++++s+
Solyc03g115150.2.1 9 VGLIYDKRMKKHFDLEEVK--HPESADRIQKIWNKLKDSGIAKRCTVMGGKEAKDEHISLVHNRKHIDFIKSISSKEEMFWKEMAKKYNSV 97
689**********999999..****************************************************9999999999******** PP
class-2.txt 93 ylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqe 180
y+++ s++aa +++G+v+e+++kv++gel+ +fa+vRPPGHHae++++mGFClfnnva+a+k+l++k + +kkilivDwDvHhGnGtq+
Solyc03g115150.2.1 98 YFNQGSSEAAYISAGCVIEVAEKVAEGELDSAFAIVRPPGHHAEPNQPMGFCLFNNVAIATKYLLDKRAdlgIKKILIVDWDVHHGNGTQK 188
****************************************************************99887788******************* PP
class-2.txt 181 ifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdpl 271
+f+kdp+vl++S+HR+d g+++p + g+ + +geg+g+g+n+Nv+w++g++gda+yla++++v++p+akeF Pd++l+saGfDaa gdpl
Solyc03g115150.2.1 189 MFWKDPRVLFFSVHRHDFGTYYPCDEAGSHKMTGEGAGKGYNINVPWEHGGCGDADYLAVWDHVLIPVAKEFGPDIILISAGFDAAIGDPL 279
***********************9999**************************************************************** PP
class-2.txt 272 gglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLl 321
gg++v++++ya + ++ll++agg++v++lEGGy+ +ia++v+a++++Ll
Solyc03g115150.2.1 280 GGCCVSPHGYAVMLNKLLEFAGGKIVMALEGGYDKVSIANSVQACMEVLL 329
************************************************98 PP

  HDAC Class-I

         class-1.txt   5 yaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcP 93 
+yd+++ +++ ++khp r++ + + + + g+ k+ +++ k+a+ e+++ +h+ ++i+f+k+++++++ ++ kk+n
Solyc03g115150.2.1 11 LIYDKRMKKHFDleEVKHPESADRIQKIWNKLKDSGIAKRCTVMGGKEAKDEHISLVHNRKHIDFIKSISSKEEMFWKEMAKKYNSV---Y 98
566666654432236799*****************************************************9999999999999954...4 PP
class-1.txt 94 vfdglfeycqlitGasleaakkLnkkeadiainw.aGGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveea 178
+g e + +++G +e a+k+ ++e d a hha ++ Gfc n++ +a ll k k++l +d d+hhG+g ++
Solyc03g115150.2.1 99 FNQGSSEAAYISAGCVIEVAEKVAEGELDSAFAIvRPPGHHAEPNQPMGFCLFNNVAIATKYLLDKradlgIKKILIVDWDVHHGNGTQKM 189
5678899999****************9887655413445*********************9998652333369****************** PP
class-1.txt 179 fyttdrvmtvsfhkyg.eeffPg..tGdlsdvgaekgkyyavnvPlkd.gidDesyekifksviskvieafePeavvlqcGaDslagDrlg 265
f + rv+ s+h+++ +++P +G+ + +g++ gk y +nvP ++ g+ D y ++ +v+ +v + f P+++++ G D+ gD+lg
Solyc03g115150.2.1 190 FWKDPRVLFFSVHRHDfGTYYPCdeAGSHKMTGEGAGKGYNINVPWEHgGCGDADYLAVWDHVLIPVAKEFGPDIILISAGFDAAIGDPLG 280
************9976335999644799999***************9846***************************************** PP
class-1.txt 266 efnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaR 303
+s +g+a +++ + +f ++++ GGY + +a
Solyc03g115150.2.1 281 GCCVSPHGYAVMLNKLLEFaGGKIVMALEGGYDKVSIAN 319
*******************666777888999*9988875 PP

Protein Sequence
(Fasta)
MDSGERRRVG LIYDKRMKKH FDLEEVKHPE SADRIQKIWN KLKDSGIAKR CTVMGGKEAK 60
DEHISLVHNR KHIDFIKSIS SKEEMFWKEM AKKYNSVYFN QGSSEAAYIS AGCVIEVAEK 120
VAEGELDSAF AIVRPPGHHA EPNQPMGFCL FNNVAIATKY LLDKRADLGI KKILIVDWDV 180
HHGNGTQKMF WKDPRVLFFS VHRHDFGTYY PCDEAGSHKM TGEGAGKGYN INVPWEHGGC 240
GDADYLAVWD HVLIPVAKEF GPDIILISAG FDAAIGDPLG GCCVSPHGYA VMLNKLLEFA 300
GGKIVMALEG GYDKVSIANS VQACMEVLLK QKPIIGSSEA YPFESSWRVI RAVRKTLSPF 360
WQSLSERLPV KITSMSSPYI QVVSSDSEDE YNTFSNRVSQ HLEMDIENVI QPFSDLKVND 420
DTGQASNNSH TWREELSKID IWYATFGSNM KLSRFLCYIE GGQVEGMRKP CIGSLDKSKP 480
KEIKWESFPH RLFFAREHTA TWGPGGVAFL HPECNSDEKA YLCLYRITLE QFNDVLLQEN 540
TSSFDMNYPL FDMTDLQSIE ERKCVPVEAV KNGWYHNVLY LGKENGIPIL TMTCQLSDVD 600
NFKSGKVGMC KPSKEYANTL IRGLVEGKQL SEEEATTYIQ EAASRAL 647
Nucleotide Sequence
(Fasta)
TCAGTTTTGC CAGTCACTGT GTACTCACTA GGAGAAATTG ATTTTCGCTA TCAATCTACA 60
AGTCTTCCAT GGATTCCGGT GAACGACGGC GCGTTGGACT GATATACGAT AAAAGAATGA 120
AAAAGCATTT TGATCTAGAA GAAGTGAAAC ATCCGGAGAG TGCAGATCGT ATTCAGAAAA 180
TCTGGAACAA GCTTAAGGAT TCAGGAATCG CTAAGAGATG TACTGTTATG GGTGGAAAGG 240
AAGCCAAGGA TGAACATATA TCTTTGGTTC ATAACAGAAA ACATATAGAT TTCATCAAAA 300
GCATTAGCTC AAAAGAAGAG ATGTTCTGGA AAGAGATGGC TAAGAAGTAC AATTCGGTAT 360
ACTTCAATCA AGGCTCTTCA GAAGCAGCTT ACATTTCTGC AGGCTGTGTG ATTGAGGTTG 420
CTGAGAAAGT TGCTGAAGGA GAACTAGACT CTGCCTTTGC CATTGTCAGG CCTCCTGGTC 480
ATCACGCAGA ACCAAATCAA CCAATGGGAT TTTGCTTATT TAACAATGTT GCTATAGCTA 540
CAAAATATCT CTTGGATAAA AGAGCTGATT TGGGGATCAA GAAGATCTTA ATAGTTGATT 600
GGGATGTCCA TCATGGAAAT GGCACCCAAA AGATGTTTTG GAAGGACCCT CGAGTTCTCT 660
TCTTTTCTGT GCATAGGCAC GATTTTGGAA CTTATTATCC TTGTGATGAA GCTGGGTCGC 720
ACAAAATGAC TGGTGAAGGA GCGGGAAAAG GATACAATAT AAATGTTCCT TGGGAGCATG 780
GCGGTTGTGG TGATGCAGAC TATCTTGCTG TGTGGGATCA TGTCTTGATT CCTGTTGCCA 840
AAGAATTTGG TCCTGACATT ATCCTGATCT CAGCAGGATT TGATGCAGCT ATTGGTGATC 900
CTCTTGGTGG ATGTTGTGTT AGTCCACACG GATATGCTGT AATGTTGAAC AAGTTGTTGG 960
AATTTGCCGG AGGCAAGATT GTAATGGCAC TTGAAGGTGG ATATGATAAG GTCTCTATAG 1020
CAAATTCTGT GCAAGCTTGT ATGGAAGTGT TATTAAAGCA AAAACCAATT ATTGGATCTT 1080
CTGAGGCTTA TCCATTTGAA TCCTCATGGC GAGTGATACG GGCTGTACGT AAAACGTTGA 1140
GTCCATTTTG GCAATCATTA TCGGAGAGAT TACCAGTGAA GATCACTAGC ATGAGCTCTC 1200
CTTACATTCA GGTCGTTAGC TCTGATTCTG AAGATGAGTA CAACACCTTT TCTAACAGGG 1260
TATCACAACA TTTGGAGATG GATATTGAGA ATGTAATTCA ACCATTTTCA GACCTGAAAG 1320
TTAATGATGA CACAGGTCAA GCTAGCAATA ATTCTCACAC TTGGAGGGAA GAGCTTTCAA 1380
AGATTGATAT ATGGTATGCC ACGTTTGGAT CAAATATGAA GTTATCAAGG TTCCTTTGCT 1440
ATATTGAAGG AGGACAGGTG GAAGGCATGC GAAAGCCATG TATTGGTTCT TTGGATAAAA 1500
GCAAGCCAAA GGAGATCAAA TGGGAATCTT TTCCCCATCG CCTATTCTTT GCTCGTGAGC 1560
ATACAGCTAC CTGGGGTCCG GGTGGGGTTG CTTTTCTTCA CCCTGAATGC AACAGTGATG 1620
AAAAAGCTTA CTTGTGCCTA TATAGGATAA CGCTTGAGCA ATTTAATGAT GTTTTACTTC 1680
AAGAGAATAC TTCAAGCTTT GACATGAATT ACCCTTTGTT TGACATGACT GACTTACAAT 1740
CTATTGAAGA AAGAAAATGT GTTCCAGTGG AGGCTGTCAA GAATGGCTGG TACCATAATG 1800
TGCTTTACCT GGGAAAGGAG AATGGTATTC CTATTTTGAC AATGACATGC CAACTGTCAG 1860
ATGTTGATAA CTTCAAATCA GGTAAAGTAG GTATGTGCAA ACCATCTAAA GAATATGCCA 1920
ACACTCTGAT TAGAGGTTTG GTAGAAGGGA AGCAGTTATC AGAAGAGGAA GCCACCACTT 1980
ACATACAAGA AGCAGCTAGC AGAGCATTGT AACTGCCCTA TCCTGCTTGT TTGTTTGTAC 2040
AGTTGACAAT TATGTGAGTA TAATGCCTAG CAACATATGA ACCAGAAATG TTTTTGTGCC 2100
ATATTTTTTG CGGAAGCAAC TTCTTCCTAT TTGGTCAGGG TGTATATAAC TTGTTGGATC 2160
GACGTAAATT TTTCTGATTC CTTCTTTCAA CTGCAATATT TTTGGCTAAG CAGTTGAAAT 2220
GTATTTTGCC CACAAACTAC TCTGATCATG TCCATTGAAT GTGGCAGTTA GTAGCTGATC 2280
CCAGTATTTG T 2292
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Viv-0107 VIT_17s0000g07280.t01 Vitis vinifera 65 0.0 877
WERAM-Thc-0031 EOY22062 Theobroma cacao 64 0.0 862
WERAM-Pot-0045 POPTR_0004s09180.1 Populus trichocarpa 62 0.0 842
WERAM-Bro-0134 Bo7g098310.1 Brassica oleracea 59 0.0 805
WERAM-Glm-0045 GLYMA05G00460.1 Glycine max 59 0.0 801
WERAM-Brr-0068 Bra012984.1-P Brassica rapa 58 0.0 798
WERAM-Art-0146 AT5G61060.1 Arabidopsis thaliana 59 0.0 790
WERAM-Arl-0149 scaffold_802745.1 Arabidopsis lyrata 58 0.0 783
WERAM-Met-0112 KEH32016 Medicago truncatula 57 0.0 777
WERAM-Mua-0066 GSMUA_Achr4P03250_001 Musa acuminata 56 0.0 769
WERAM-Prp-0049 EMJ12067 Prunus persica 57 0.0 758
WERAM-Ors-0072 OS07T0602200-01 Oryza sativa 54 0.0 754
WERAM-Orr-0082 ORUFI07G22240.1 Oryza rufipogon 54 0.0 754
WERAM-Orgl-0076 OGLUM07G21150.1 Oryza glumaepatula 54 0.0 754
WERAM-Ori-0088 BGIOSGA026083-PA Oryza indica 54 0.0 753
WERAM-Org-0078 ORGLA07G0164500.1 Oryza glaberrima 54 0.0 753
WERAM-Orbr-0087 OB07G26850.1 Oryza brachyantha 54 0.0 746
WERAM-Orni-0078 ONIVA07G19970.1 Oryza nivara 54 0.0 739
WERAM-Tra-0099 Traes_2DS_DFCAF1EA5.1 Triticum aestivum 53 0.0 735
WERAM-Lep-0079 LPERR07G18450.1 Leersia perrieri 53 0.0 730
WERAM-Sob-0036 Sb02g038550.1 Sorghum bicolor 52 0.0 724
WERAM-Zem-0143 GRMZM2G457889_P01 Zea mays 53 0.0 721
WERAM-Sei-0109 Si029091m Setaria italica 53 0.0 720
WERAM-Orp-0076 OPUNC07G19850.1 Oryza punctata 55 0.0 716
WERAM-Brd-0010 BRADI1G22240.1 Brachypodium distachyon 53 0.0 709
WERAM-Aet-0088 EMT31322 Aegilops tauschii 54 0.0 692
WERAM-Orl-0040 KN538895.1_FGP007 Oryza longistaminata 56 0.0 691
WERAM-Amt-0091 ERM99985 Amborella trichopoda 53 0.0 678
WERAM-Orb-0079 OBART07G21300.1 Oryza barthii 55 0.0 639
WERAM-Sem-0010 EFJ19764 Selaginella moellendorffii 46 4e-163 572
WERAM-Tru-0053 TRIUR3_22556-P1 Triticum urartu 44 4e-139 492
WERAM-Hov-0018 MLOC_16422.1 Hordeum vulgare 63 2e-128 457
WERAM-Php-0085 PP1S34_252V6.1 Physcomitrella patens 47 4e-107 386
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 40 2e-85 313
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 41 6e-85 312
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 40 7e-85 312
WERAM-Ran-0201 ENSRNOP00000063689.2 Rattus norvegicus 41 1e-84 311
WERAM-Kop-0012 CAY68916 Komagataella pastoris 44 2e-84 311
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 40 2e-84 311
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 41 5e-84 309
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 42 1e-83 308
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 41 2e-83 308
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 41 2e-83 307
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 40 1e-82 305
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 42 1e-82 305
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 41 1e-82 305
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 39 2e-82 304
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 40 4e-82 303
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 40 4e-82 303
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 40 7e-82 302
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 41 9e-82 302
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 38 1e-81 301
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 40 3e-81 300
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 40 3e-81 300
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 40 4e-81 300
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 39 5e-81 299
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 40 5e-81 299
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 41 7e-81 299
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 39 1e-80 298
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 41 2e-80 298
WERAM-Orla-0013 ENSORLP00000001341.1 Oryzias latipes 40 2e-80 297
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 42 3e-80 296
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 40 9e-80 295
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 38 1e-79 295
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 44 2e-79 294
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 39 2e-79 294
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 41 5e-79 293
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 40 6e-79 292
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 40 8e-79 292
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 40 9e-79 292
WERAM-Caa-0034 KGT64501 Candida albicans 41 1e-78 291
WERAM-Usm-0012 UM02102P0 Ustilago maydis 42 2e-78 291
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 41 4e-78 290
WERAM-Pes-0105 ENSPSIP00000013270.1 Pelodiscus sinensis 43 5e-78 289
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 42 6e-78 289
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 42 7e-78 289
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 41 7e-78 289
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 42 8e-78 289
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 40 1e-77 288
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 39 1e-77 288
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 42 2e-77 288
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 42 2e-77 287
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 42 3e-77 287
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 40 4e-77 286
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 42 4e-77 286
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 41 6e-77 286
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 42 1e-76 285
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 39 2e-76 284
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 40 3e-76 283
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 40 3e-76 283
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 40 3e-76 283
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 40 4e-76 283
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 43 4e-76 283
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 39 5e-76 283
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 43 6e-76 282
WERAM-Coi-0028 EAS30926 Coccidioides immitis 40 7e-76 282
WERAM-Leo-0130 ENSLOCP00000016135.1 Lepisosteus oculatus 42 1e-75 281
WERAM-Poa-0196 ENSPPYP00000022747.2 Pongo abelii 38 1e-75 281
WERAM-Pat-0104 ENSPTRP00000022412.3 Pan troglodytes 40 2e-75 281
WERAM-Nol-0078 ENSNLEP00000009627.2 Nomascus leucogenys 38 2e-75 281
WERAM-Gaa-0020 ENSGACP00000002894.1 Gasterosteus aculeatus 39 3e-75 280
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 40 4e-75 280
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 42 4e-75 280
WERAM-Tut-0056 ENSTTRP00000004443.1 Tursiops truncatus 42 7e-75 279
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 43 1e-74 278
WERAM-Ptv-0096 ENSPVAP00000008849.1 Pteropus vampyrus 39 2e-74 277
WERAM-Asg-0010 AAS51704 Ashbya gossypii 35 4e-74 276
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 38 4e-74 276
WERAM-Sah-0012 ENSSHAP00000001165.1 Sarcophilus harrisii 40 4e-74 276
WERAM-Scp-0036 SPBC800.03.1:pep Schizosaccharomyces pombe 39 5e-74 276
WERAM-Sac-0037 YNL021W Saccharomyces cerevisiae 36 6e-74 276
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 39 8e-74 275
WERAM-Gag-0014 GGTG_04308T0 Gaeumannomyces graminis 38 9e-74 275
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 39 9e-74 275
WERAM-Cae-0060 F41H10.6b Caenorhabditis elegans 40 3e-73 273
WERAM-Trr-0039 EGR46026 Trichoderma reesei 37 3e-73 273
Created Date 25-Jun-2016