WERAM Information


Tag Content
WERAM ID WERAM-Bro-0134
Ensembl Protein ID Bo7g098310.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo7g098310 Bo7g098310.1 Bo7g098310.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 2.40e-132 442.5 23 344
HDAC Class-I 2.00e-34 121.1 24 335
Organism Brassica oleracea
Domain Profile
  HDAC Class-II

   class-2.txt   2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsiylesk 97 
+glvyde+m+kh+++++++ hpE+p+Ri+ i+++lq ag+ ++++ + ++ka++++lqlvH+++hv+ +++ + k+++ + ++++++ +siyl+ +
Bo7g098310.1 23 VGLVYDETMCKHDTPNGED--HPECPDRIRVIWEKLQLAGVSQRCVVFGGSKAEDKHLQLVHTKDHVSVVKSLStKKKDYRRNRIASQWNSIYLNGS 117
78***************99..***************************************************998889999999************* PP
class-2.txt 98 sikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeifykdpkvlyl 191
s++aa la+G+v+el++kv++gel++g+a+vRPPGHHae+++amGFClfnnvavaa++l+++ + vkkilivDwDvHhGnGtq++f+kdp+vl++
Bo7g098310.1 118 SSEAAFLAAGSVVELAEKVAEGELDCGYAIVRPPGHHAEPDEAMGFCLFNNVAVAASYLLDERPelgVKKILIVDWDVHHGNGTQKMFWKDPRVLFF 214
************************************************************9887778****************************** PP
class-2.txt 192 SlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkql 288
S+HR+++g f+p+ ++g+++ vgeg+gegfn+Nv+w++g +gda+ylaa++++++p+akeF+Pd++l+saGfDaa gdplgg++vt+ +y+ + k+l
Bo7g098310.1 215 SVHRHEHGGFYPAGDDGDYNMVGEGPGEGFNINVPWEQGRCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVMLKKL 311
************************************************************************************************* PP
class-2.txt 289 lklaggrvvlvlEGGynlkaiaeaveavvkaLl 321
+++a+g++vl+lEGGynl++ia+++ a+v++Ll
Bo7g098310.1 312 MEFAKGKIVLALEGGYNLDSIAKSSLACVQVLL 344
********************************8 PP

  HDAC Class-I

   class-1.txt   4 ayaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeels.kelkkfnvgedcPvfdg 97 
+yde++ ++ + g++hp p r++++ e + g+s++ ++ +ka+ ++l+ +h++++++++k+ ++++++ + +++n + +
Bo7g098310.1 24 GLVYDETMCKHDTpnGEDHPECPDRIRVIWEKLQLAGVSQRCVVFGGSKAEDKHLQLVHTKDHVSVVKSLSTKKKDYRRnRIASQWNSIY---LNGS 117
556777776665444999*************9999**********************************999888754413445555322...3333 PP
class-1.txt 98 lfeycqlitGasleaakkLnkkeadi..ainwaGGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveeafyttdrvmt 187
e + l +G+ +e a+k+ ++e d ai G hha +ea Gfc n++ +a ll + k++l +d d+hhG+g ++ f + rv+
Bo7g098310.1 118 SSEAAFLAAGSVVELAEKVAEGELDCgyAIVRPPG-HHAEPDEAMGFCLFNNVAVAASYLLDErpelgVKKILIVDWDVHHGNGTQKMFWKDPRVLF 213
456667899999*********99887225555555.********************99999742233368*************************** PP
class-1.txt 188 vsfhkyge.effPg..tGdlsdvgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkf 280
s+h++++ +f+P+ Gd + vg++ g + +nvP ++g + D y + +++ +v + f+P++++l G D+ gD+lg ++ g++ ++k
Bo7g098310.1 214 FSVHRHEHgGFYPAgdDGDYNMVGEGPGEGFNINVPWEQGrCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVMLKK 310
*****99735999733599999****************99799****************************************************** PP
class-1.txt 281 vksf.nlpllvlGGGGYtlrnvaRc 304
+ +f + ++++ GGY+l +a+
Bo7g098310.1 311 LMEFaKGKIVLALEGGYNLDSIAKS 335
****5556666679*****999975 PP

Protein Sequence
(Fasta)
MAMAGESSNN NYRDCDGKSH RKVGLVYDET MCKHDTPNGE DHPECPDRIR VIWEKLQLAG 60
VSQRCVVFGG SKAEDKHLQL VHTKDHVSVV KSLSTKKKDY RRNRIASQWN SIYLNGSSSE 120
AAFLAAGSVV ELAEKVAEGE LDCGYAIVRP PGHHAEPDEA MGFCLFNNVA VAASYLLDER 180
PELGVKKILI VDWDVHHGNG TQKMFWKDPR VLFFSVHRHE HGGFYPAGDD GDYNMVGEGP 240
GEGFNINVPW EQGRCGDADY LAAWDHILIP VAKEFNPDII LLSAGFDAAI GDPLGGCRVT 300
PYGYSVMLKK LMEFAKGKIV LALEGGYNLD SIAKSSLACV QVLLEDKPIQ GSSEAYPFES 360
TWRVIQAVRK KLSAYWPSLA DVLSSKLIDQ KTPTPIIVFS SSDSETEDYA DDILDQMSRL 420
NIENHHVDTV STSWRRDLSK VDVWYASFGS NMWKPRFLCY IQGGQVEGMK KVCVGSMDKT 480
PPKQIMWESF PHRLFFGRES SVTWGVGGVA FINPLTNLND QTHMCLYRIT LEQFNDVLFQ 540
ENGLKVDSDS PLFGLDTLQL VEKKGSIPLA SGGWYGNIVC LGKECDIPIL TMTCTLSAVE 600
KFKSGEIPLR PPSEAYANTM IRGLVEGGRL SEEEAKAYIH NAASKPL 647
Nucleotide Sequence
(Fasta)
ATGGCAATGG CCGGTGAATC TTCTAATAAC AACTACAGAG ACTGTGACGG GAAGAGTCAT 60
CGAAAGGTGG GTCTTGTCTA TGACGAGACG ATGTGCAAAC ACGACACACC TAACGGCGAG 120
GATCACCCTG AGTGTCCTGA TCGCATCAGA GTTATCTGGG AGAAGCTCCA GCTCGCCGGA 180
GTCTCTCAAA GATGTGTGGT TTTTGGTGGT AGCAAAGCTG AAGACAAGCA TCTCCAATTG 240
GTTCACACAA AGGACCATGT TAGTGTAGTT AAGAGTTTAA GCACAAAGAA GAAAGATTAC 300
CGGAGAAACA GGATTGCTTC ACAGTGGAAT TCAATATATC TGAATGGAAG TTCATCTGAA 360
GCCGCGTTTC TTGCAGCTGG ATCTGTTGTA GAGTTGGCGG AGAAAGTTGC AGAAGGAGAG 420
TTGGATTGTG GGTATGCTAT TGTCAGGCCC CCAGGGCACC ATGCTGAGCC AGATGAAGCT 480
ATGGGTTTCT GTTTGTTCAA CAACGTAGCA GTCGCTGCTA GCTATTTACT TGATGAAAGA 540
CCTGAACTAG GTGTCAAGAA GATTCTGATT GTTGATTGGG ATGTCCATCA TGGAAATGGC 600
ACGCAGAAGA TGTTCTGGAA AGATCCTCGT GTACTGTTTT TCTCTGTTCA CAGGCACGAA 660
CACGGAGGCT TCTATCCAGC GGGTGATGAT GGAGACTACA ACATGGTTGG GGAAGGTCCA 720
GGTGAAGGGT TTAACATAAA CGTTCCATGG GAACAAGGAA GATGCGGAGA TGCAGATTAT 780
CTTGCCGCAT GGGACCATAT TTTGATTCCT GTGGCGAAGG AGTTTAATCC TGATATTATT 840
TTGTTATCAG CTGGATTTGA TGCAGCTATT GGTGATCCAC TTGGGGGCTG TCGTGTAACA 900
CCATATGGAT ATTCAGTTAT GTTGAAGAAG CTGATGGAGT TTGCAAAAGG AAAGATTGTG 960
TTGGCGTTAG AGGGAGGGTA CAATCTTGAC TCAATTGCAA AGTCTTCACT GGCATGTGTC 1020
CAAGTCTTGC TTGAAGACAA ACCAATTCAA GGTTCTTCTG AAGCATACCC ATTCGAGTCT 1080
ACATGGCGTG TCATACAAGC GGTACGAAAG AAGCTGTCTG CATATTGGCC TTCACTTGCA 1140
GATGTATTAT CATCGAAGCT CATTGATCAG AAAACTCCCA CTCCAATTAT TGTTTTCTCA 1200
AGCTCCGACT CTGAAACTGA AGACTACGCT GATGATATCC TAGATCAAAT GTCGAGACTC 1260
AACATTGAAA ACCACCACGT AGATACAGTT TCTACATCTT GGAGAAGAGA TCTCTCAAAA 1320
GTTGATGTCT GGTATGCCTC TTTTGGATCC AACATGTGGA AACCAAGGTT CCTTTGCTAT 1380
ATTCAAGGGG GACAAGTAGA GGGAATGAAA AAGGTCTGCG TTGGTTCAAT GGATAAAACT 1440
CCACCAAAGC AAATAATGTG GGAATCATTT CCACACAGGC TGTTCTTTGG ACGTGAATCA 1500
TCAGTTACTT GGGGTGTAGG AGGAGTTGCT TTCATCAACC CACTTACTAA TCTCAATGAT 1560
CAAACTCACA TGTGTTTGTA CAGAATCACG CTTGAGCAGT TCAACGATGT TCTGTTTCAG 1620
GAAAATGGAT TGAAAGTAGA TTCTGATTCT CCGCTCTTTG GTCTAGATAC TCTGCAGTTA 1680
GTAGAGAAGA AAGGATCCAT TCCACTTGCT TCGGGTGGTT GGTATGGAAA CATTGTCTGC 1740
TTGGGGAAAG AATGCGACAT CCCTATACTT ACAATGACTT GCACACTATC TGCTGTTGAG 1800
AAGTTCAAAT CCGGTGAGAT CCCTTTAAGA CCTCCTTCAG AAGCATATGC AAACACTATG 1860
ATAAGAGGGC TTGTTGAAGG AGGAAGATTA TCTGAAGAAG AAGCTAAAGC TTACATACAC 1920
AATGCTGCAT CTAAACCTCT CTAG 1945
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0068 Bra012984.1-P Brassica rapa 97 0.0 1293
WERAM-Art-0146 AT5G61060.1 Arabidopsis thaliana 84 0.0 1132
WERAM-Arl-0149 scaffold_802745.1 Arabidopsis lyrata 84 0.0 1113
WERAM-Thc-0031 EOY22062 Theobroma cacao 65 0.0 897
WERAM-Pot-0045 POPTR_0004s09180.1 Populus trichocarpa 68 0.0 891
WERAM-Viv-0107 VIT_17s0000g07280.t01 Vitis vinifera 67 0.0 885
WERAM-Glm-0045 GLYMA05G00460.1 Glycine max 64 0.0 872
WERAM-Met-0112 KEH32016 Medicago truncatula 61 0.0 811
WERAM-Mua-0066 GSMUA_Achr4P03250_001 Musa acuminata 59 0.0 791
WERAM-Sol-0055 Solyc03g115150.2.1 Solanum lycopersicum 59 0.0 790
WERAM-Prp-0049 EMJ12067 Prunus persica 68 0.0 776
WERAM-Ors-0072 OS07T0602200-01 Oryza sativa 55 0.0 761
WERAM-Orr-0082 ORUFI07G22240.1 Oryza rufipogon 55 0.0 761
WERAM-Orgl-0076 OGLUM07G21150.1 Oryza glumaepatula 55 0.0 761
WERAM-Org-0078 ORGLA07G0164500.1 Oryza glaberrima 55 0.0 761
WERAM-Ori-0088 BGIOSGA026083-PA Oryza indica 55 0.0 761
WERAM-Orbr-0087 OB07G26850.1 Oryza brachyantha 56 0.0 757
WERAM-Orni-0078 ONIVA07G19970.1 Oryza nivara 55 0.0 749
WERAM-Sei-0109 Si029091m Setaria italica 56 0.0 746
WERAM-Lep-0079 LPERR07G18450.1 Leersia perrieri 55 0.0 744
WERAM-Tra-0099 Traes_2DS_DFCAF1EA5.1 Triticum aestivum 54 0.0 744
WERAM-Sob-0036 Sb02g038550.1 Sorghum bicolor 54 0.0 740
WERAM-Zem-0143 GRMZM2G457889_P01 Zea mays 54 0.0 740
WERAM-Orp-0076 OPUNC07G19850.1 Oryza punctata 56 0.0 716
WERAM-Brd-0010 BRADI1G22240.1 Brachypodium distachyon 53 0.0 704
WERAM-Aet-0088 EMT31322 Aegilops tauschii 54 0.0 687
WERAM-Orl-0040 KN538895.1_FGP007 Oryza longistaminata 56 0.0 673
WERAM-Amt-0091 ERM99985 Amborella trichopoda 54 0.0 666
WERAM-Orb-0079 OBART07G21300.1 Oryza barthii 56 0.0 659
WERAM-Sem-0010 EFJ19764 Selaginella moellendorffii 50 3e-174 609
WERAM-Hov-0018 MLOC_16422.1 Hordeum vulgare 64 5e-129 459
WERAM-Tru-0053 TRIUR3_22556-P1 Triticum urartu 50 5e-128 456
WERAM-Php-0085 PP1S34_252V6.1 Physcomitrella patens 56 3e-114 409
WERAM-Ran-0201 ENSRNOP00000063689.2 Rattus norvegicus 46 5e-87 319
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 45 1e-85 314
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 44 1e-84 311
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 44 3e-84 310
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 44 6e-84 309
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 44 1e-83 308
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 44 2e-83 307
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 45 4e-83 306
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 45 5e-83 306
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 43 6e-83 306
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 44 6e-83 306
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 44 8e-83 305
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 46 9e-83 305
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 46 1e-82 305
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 44 2e-82 304
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 44 2e-82 304
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 45 2e-82 304
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 44 2e-82 304
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 44 2e-82 304
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 44 2e-82 304
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 44 3e-82 303
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 43 3e-82 303
WERAM-Ten-0061 ENSTNIP00000000291.1 Tetraodon nigroviridis 44 4e-82 303
WERAM-Caa-0034 KGT64501 Candida albicans 44 5e-82 303
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 43 5e-82 302
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 46 7e-82 302
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 45 8e-82 302
WERAM-Gaga-0067 ENSGALP00000010190.4 Gallus gallus 45 1e-81 301
WERAM-Meg-0108 ENSMGAP00000010913.2 Meleagris gallopavo 45 2e-81 301
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 43 2e-81 300
WERAM-Orn-0108 ENSONIP00000011544.1 Oreochromis niloticus 43 3e-81 300
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 47 1e-80 298
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 41 1e-80 298
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 45 1e-80 298
WERAM-Anp-0061 ENSAPLP00000006782.1 Anas platyrhynchos 45 2e-80 298
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 42 2e-80 297
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 46 3e-80 297
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 45 4e-80 296
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 42 5e-80 296
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 44 6e-80 296
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 42 1e-79 295
WERAM-Orla-0013 ENSORLP00000001341.1 Oryzias latipes 44 3e-79 293
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 43 5e-79 293
WERAM-Pes-0124 ENSPSIP00000014863.1 Pelodiscus sinensis 44 5e-79 293
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 47 7e-79 292
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 43 8e-79 292
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 39 1e-78 291
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 42 2e-78 290
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 43 4e-78 290
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 43 5e-78 290
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 47 5e-78 290
WERAM-Tag-0054 ENSTGUP00000003859.1 Taeniopygia guttata 44 2e-77 288
WERAM-Tut-0141 ENSTTRP00000011664.1 Tursiops truncatus 40 2e-77 287
WERAM-Sah-0025 ENSSHAP00000002837.1 Sarcophilus harrisii 43 4e-77 286
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 43 5e-77 286
WERAM-Usm-0012 UM02102P0 Ustilago maydis 42 6e-77 286
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 41 6e-77 286
WERAM-Fia-0117 ENSFALP00000010126.1 Ficedula albicollis 40 1e-76 285
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 42 2e-76 284
WERAM-Kop-0012 CAY68916 Komagataella pastoris 42 2e-76 284
WERAM-Pat-0158 ENSPTRP00000032389.5 Pan troglodytes 45 4e-76 283
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 43 5e-76 283
WERAM-Nol-0194 ENSNLEP00000021748.1 Nomascus leucogenys 43 5e-76 283
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 40 6e-76 282
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 42 7e-76 282
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 38 1e-75 281
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 43 2e-75 281
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 42 2e-75 281
WERAM-Poa-0162 ENSPPYP00000019901.2 Pongo abelii 44 3e-75 280
WERAM-Leo-0108 ENSLOCP00000014009.1 Lepisosteus oculatus 41 4e-75 280
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 42 6e-75 279
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 37 1e-74 278
WERAM-Ere-0078 ENSEEUP00000006690.1 Erinaceus europaeus 40 1e-74 278
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 41 2e-74 277
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 39 3e-74 277
Created Date 25-Jun-2016