Tag |
Content |
WERAM ID |
WERAM-Pot-0045 |
Ensembl Protein ID |
POPTR_0004s09180.1 |
Gene Name |
POPTR_0004s09180g |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
1.80e-124 |
416.3 |
117 |
437 |
HDAC |
Class-I |
1.60e-38 |
134.2 |
118 |
520 |
|
Organism |
Populus trichocarpa |
Domain Profile |
HDAC Class-II
class-2.txt 3 glvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsi 92 g++ydekm+kh+++ +++ hpE+p+Ri+ i+++l ++++ ++++ l++++a+++ l++vHse+hv+l+++ + k+ +++ ++++++ +si POPTR_0004s09180.1 117 GIIYDEKMCKHHTPDGDS--HPENPNRIRVIWNKLLANNIPQRCVVLSGKEAEDKYLMAVHSENHVNLIRNISsKQFDSRRNRIASKLNSI 205 79*************999..***************************************************998888999999******** PP class-2.txt 93 ylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqe 180 y+++ s++aa a+G+vlel+++++kg+l+ g a+vRPPGHHae+++amGFClfnnvavaa+ l+++ + vkkilivDwDvHhGnGtq+ POPTR_0004s09180.1 206 YFNEGSSEAAYHAAGSVLELAERIAKGDLNSGAAIVRPPGHHAEYDEAMGFCLFNNVAVAASFLLDERPelgVKKILIVDWDVHHGNGTQK 296 ****************************************************************99887778******************* PP class-2.txt 181 ifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdpl 271 +f++d++vl++S+HR++ gsf+p ++g ++ +geg+g+g+n+Nv+w+++ +gda+yla+++++++p+ak+F+Pd+++vsaGfDaa gdpl POPTR_0004s09180.1 297 TFWNDSRVLFFSVHRHEFGSFYPGNDDGFYTMIGEGPGTGYNINVPWEHARCGDADYLAVWDHILIPVAKKFDPDMIIVSAGFDAAVGDPL 387 ***********************99****************************************************************** PP class-2.txt 272 gglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLl 321 gg++vt+ +y+ + k+l+++a+g+++l+lEGGynl++ia++ a++k+Ll POPTR_0004s09180.1 388 GGCCVTPYGYSVMLKKLMDFAQGKIMLALEGGYNLDSIANSFLACMKVLL 437 ************************************************98 PP
HDAC Class-I
class-1.txt 5 yaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcP 93 +yde++ ++h+ g++hp p+r++++ + +l+ ++ ++ +++ k+a+ ++l+ +hse+++++++++++++ ++ + + + + ++ POPTR_0004s09180.1 118 IIYDEKMCKHHTpdGDSHPENPNRIRVIWNKLLANNIPQRCVVLSGKEAEDKYLMAVHSENHVNLIRNISSKQFDSRRN---RIASKLNSI 205 57899999998766899****************************************************9998876653...333344444 PP class-1.txt 94 vf.dglfeycqlitGasleaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgve 176 f +g e + +G+ le a+++ k++ + ai G hha +ea Gfc n++ +a ll + k++l +d d+hhG+g + POPTR_0004s09180.1 206 YFnEGSSEAAYHAAGSVLELAERIAKGDLNsgAAIVRPPG-HHAEYDEAMGFCLFNNVAVAASFLLDErpelgVKKILIVDWDVHHGNGTQ 295 44167788888999999********987651156665555.*******************999988642233369**************** PP class-1.txt 177 eafyttdrvmtvsfhkyg.eeffPgt..GdlsdvgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDr 263 ++f + +rv+ s+h+++ +f+Pg G + +g++ g y +nvP +++ + D y ++ +++ +v + f+P+++++ G D+ gD+ POPTR_0004s09180.1 296 KTFWNDSRVLFFSVHRHEfGSFYPGNddGFYTMIGEGPGTGYNINVPWEHArCGDADYLAVWDHILIPVAKKFDPDMIIVSAGFDAAVGDP 386 **************9876335****733557899**************99769************************************** PP class-1.txt 264 lgefnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRcwty 307 lg ++ g++ ++k + +f + ++++ GGY+l +a + POPTR_0004s09180.1 387 LGGCCVTPYGYSVMLKKLMDFaQGKIMLALEGGYNLDSIANSFLA 431 *********************7788999999*******9988765 PP class-1.txt 226 dDesyekifksviskvieafe 246 +De+ ++i+++++++v+e f+ POPTR_0004s09180.1 500 EDEKAQNIVSEIVQEVMEPFS 520 79999************9886 PP
|
Protein Sequence (Fasta) | MAASELNYRT HRQKYDRFSC FVLVFCAVEG SAMQQIQKLK NMIRTSSTCN TKTRYLRICH 60 CPSRLPHRSA TEFPSFSLSL PSTNQRKRSR ETERVRSASM GEVEESGEMN SSERLVGIIY 120 DEKMCKHHTP DGDSHPENPN RIRVIWNKLL ANNIPQRCVV LSGKEAEDKY LMAVHSENHV 180 NLIRNISSKQ FDSRRNRIAS KLNSIYFNEG SSEAAYHAAG SVLELAERIA KGDLNSGAAI 240 VRPPGHHAEY DEAMGFCLFN NVAVAASFLL DERPELGVKK ILIVDWDVHH GNGTQKTFWN 300 DSRVLFFSVH RHEFGSFYPG NDDGFYTMIG EGPGTGYNIN VPWEHARCGD ADYLAVWDHI 360 LIPVAKKFDP DMIIVSAGFD AAVGDPLGGC CVTPYGYSVM LKKLMDFAQG KIMLALEGGY 420 NLDSIANSFL ACMKVLLEDK PVSGSVEAYP FESTWRVIQA VRKKLSPYWP ALADELPLKL 480 TIQNAPHPHI LISNSDSEGE DEKAQNIVSE IVQEVMEPFS KLKVEDNQDQ VATSSTSWRS 540 ELSKIDIWYA SFGSNMWKPR FLCYIEGGQV DGMKKPCTGS MDKNLPKEIL WKNFPHRLYF 600 GRDSTRTWGP GGVAFLHPDN SVGEKTYMCL YKITLEQFND VLLQENVSSY QMNSPVFDLA 660 ALQSIKNKGS ISLEVFKSGW YRNVVYLGNE RDIPILTMTC SISDAESFKL GEFPLRRPSK 720 EYANTLVKGL VESGQLSEEE AIAYIEEASS KPLC 754Protein Fasta Sequence
>POPTR_0004s09180.1|Class-I|Populus trichocarpa MAASELNYRTHRQKYDRFSCFVLVFCAVEGSAMQQIQKLKNMIRTSSTCNTKTRYLRICHCPSRLPHRSATEFPSFSLSLPSTNQRKRSRETERVRSASMGEVEESGEMNSSERLVGIIYDEKMCKHHTPDGDSHPENPNRIRVIWNKLLANNIPQRCVVLSGKEAEDKYLMAVHSENHVNLIRNISSKQFDSRRNRIASKLNSIYFNEGSSEAAYHAAGSVLELAERIAKGDLNSGAAIVRPPGHHAEYDEAMGFCLFNNVAVAASFLLDERPELGVKKILIVDWDVHHGNGTQKTFWNDSRVLFFSVHRHEFGSFYPGNDDGFYTMIGEGPGTGYNINVPWEHARCGDADYLAVWDHILIPVAKKFDPDMIIVSAGFDAAVGDPLGGCCVTPYGYSVMLKKLMDFAQGKIMLALEGGYNLDSIANSFLACMKVLLEDKPVSGSVEAYPFESTWRVIQAVRKKLSPYWPALADELPLKLTIQNAPHPHILISNSDSEGEDEKAQNIVSEIVQEVMEPFSKLKVEDNQDQVATSSTSWRSELSKIDIWYASFGSNMWKPRFLCYIEGGQVDGMKKPCTGSMDKNLPKEILWKNFPHRLYFGRDSTRTWGPGGVAFLHPDNSVGEKTYMCLYKITLEQFNDVLLQENVSSYQMNSPVFDLAALQSIKNKGSISLEVFKSGWYRNVVYLGNERDIPILTMTCSISDAESFKLGEFPLRRPSKEYANTLVKGLVESGQLSEEEAIAYIEEASSKPLC
|
Nucleotide Sequence (Fasta) | ATGGCCGCGT CTGAGTTGAA TTATAGAACT CATCGGCAAA AGTATGATCG ATTTTCATGT 60 TTTGTTCTTG TTTTTTGTGC TGTGGAGGGT TCTGCCATGC AGCAAATACA AAAACTGAAG 120 AACATGATAC GAACTTCAAG TACATGCAAT ACAAAAACAA GATACCTGCG AATCTGCCAC 180 TGCCCTTCAC GTCTCCCTCA CAGGTCAGCC ACAGAGTTCC CATCGTTCTC TCTTTCTCTC 240 CCTTCCACCA ACCAACGCAA GCGATCGAGA GAGACAGAGA GAGTAAGATC AGCAAGTATG 300 GGTGAGGTGG AGGAATCCGG TGAAATGAAT AGCAGTGAAA GGCTCGTGGG AATAATTTAT 360 GATGAGAAGA TGTGTAAGCA TCATACTCCT GATGGTGATT CTCATCCAGA GAATCCCAAT 420 CGCATTAGGG TTATTTGGAA CAAGCTCTTA GCCAATAACA TTCCTCAAAG GTGTGTGGTT 480 TTGAGTGGGA AAGAAGCAGA AGATAAATAT TTAATGGCCG TTCACTCTGA AAATCATGTT 540 AATTTGATTA GAAATATAAG CTCCAAACAG TTTGATTCAC GAAGAAATAG GATTGCTTCA 600 AAACTGAATT CAATTTACTT TAATGAGGGA TCATCTGAAG CTGCTTACCA TGCGGCCGGC 660 TCCGTTTTAG AGCTTGCTGA GAGAATTGCA AAAGGGGATT TGAATTCTGG TGCTGCGATT 720 GTTAGGCCTC CTGGACATCA TGCTGAATAT GATGAGGCGA TGGGTTTTTG CCTATTCAAT 780 AATGTGGCTG TGGCAGCGAG TTTTCTATTA GATGAAAGAC CAGAATTGGG TGTTAAAAAG 840 ATTTTGATTG TTGACTGGGA TGTTCATCAT GGAAATGGCA CTCAAAAGAC ATTTTGGAAT 900 GATTCTCGGG TCTTATTTTT CTCTGTTCAT AGGCATGAGT TTGGGAGTTT TTACCCAGGG 960 AATGATGATG GCTTTTATAC TATGATTGGA GAAGGACCAG GTACGGGATA TAATATAAAT 1020 GTCCCTTGGG AGCATGCAAG ATGTGGGGAT GCAGATTATC TTGCTGTTTG GGATCACATC 1080 TTGATCCCTG TTGCTAAGAA ATTTGATCCT GACATGATTA TAGTATCTGC AGGATTTGAT 1140 GCAGCTGTTG GTGATCCTCT TGGTGGATGT TGTGTCACTC CATATGGATA CTCAGTAATG 1200 TTGAAAAAGT TGATGGATTT TGCACAAGGT AAGATTATGT TGGCATTAGA AGGAGGATAC 1260 AACCTTGATT CTATAGCAAA TTCATTTCTT GCATGCATGA AAGTTCTTCT TGAAGACAAG 1320 CCTGTCAGTG GGTCTGTAGA GGCATACCCA TTTGAGTCGA CATGGCGTGT GATACAAGCG 1380 GTTCGCAAGA AATTAAGTCC CTACTGGCCT GCACTTGCAG ATGAATTACC ATTAAAGTTG 1440 ACTATTCAAA ATGCCCCTCA TCCGCATATT CTTATCTCAA ACTCTGACTC TGAAGGTGAG 1500 GATGAAAAGG CTCAAAATAT TGTGTCAGAA ATTGTTCAGG AGGTCATGGA ACCCTTTTCG 1560 AAGCTGAAAG TTGAAGATAA CCAAGATCAA GTGGCTACAT CTTCTACCTC TTGGAGATCT 1620 GAGCTTTCAA AGATTGACAT TTGGTATGCT TCTTTTGGAT CAAATATGTG GAAGCCTAGA 1680 TTCCTATGCT ATATTGAAGG CGGTCAGGTA GATGGTATGA AGAAGCCATG TACTGGTTCA 1740 ATGGACAAAA ACCTGCCAAA AGAGATTTTG TGGAAAAATT TCCCACACAG ACTATACTTT 1800 GGTCGTGATT CTACACGTAC ATGGGGCCCT GGGGGAGTTG CTTTTCTTCA TCCTGATAAT 1860 AGTGTTGGTG AAAAAACTTA CATGTGCCTG TATAAAATAA CACTAGAGCA GTTCAATGAT 1920 GTTTTGCTTC AAGAAAATGT ATCGAGTTAT CAGATGAATT CACCTGTATT TGATTTGGCT 1980 GCACTACAGT CTATCAAGAA CAAGGGGTCC ATTTCTTTGG AGGTTTTCAA GAGCGGCTGG 2040 TACCGTAATG TTGTTTACTT GGGAAATGAG CGTGATATTC CTATACTGAC TATGACGTGT 2100 TCGATTTCTG ATGCTGAAAG CTTTAAACTT GGAGAGTTTC CCTTGCGCCG TCCTTCTAAA 2160 GAGTATGCCA ATACCTTAGT GAAGGGCCTG GTTGAAAGTG GACAACTCTC AGAAGAGGAA 2220 GCCATTGCTT ACATAGAAGA AGCTTCTTCG AAACCACTGT GTTAGCAACC TCAGTCTTAT 2280 TTAATATCTT CATGTAAATG TTTGAAATCA GTAGGCTTGA TGAAACAGTC ATTCGTGCTC 2340 TTCTGACAGG AAGTTTGAAG TGTATTACTG TATGTCCTAT GAATACTCCT GATTCTGGCC 2400 AAACCTTTCA ATATTGGCAA TTGGCATTGC TGTGGGTCTG AAGATCCCAT TGATCCATGA 2460 TGTGTTGCTG TTCATCATTC CTCCTACGAT GACTGATGTA GAGACATTTT TACTAGCGAT 2520 GCAGCTGATT TTCTTTTTAT TTGGAATATT CTTGATTATT ACGAGTATGA TTGCACATGC 2580 ATGGTC
2587Nucleotide Fasta Sequence
>POPTR_0004s09180.1|Class-I|Populus trichocarpa ATGGCCGCGTCTGAGTTGAATTATAGAACTCATCGGCAAAAGTATGATCGATTTTCATGTTTTGTTCTTGTTTTTTGTGCTGTGGAGGGTTCTGCCATGCAGCAAATACAAAAACTGAAGAACATGATACGAACTTCAAGTACATGCAATACAAAAACAAGATACCTGCGAATCTGCCACTGCCCTTCACGTCTCCCTCACAGGTCAGCCACAGAGTTCCCATCGTTCTCTCTTTCTCTCCCTTCCACCAACCAACGCAAGCGATCGAGAGAGACAGAGAGAGTAAGATCAGCAAGTATGGGTGAGGTGGAGGAATCCGGTGAAATGAATAGCAGTGAAAGGCTCGTGGGAATAATTTATGATGAGAAGATGTGTAAGCATCATACTCCTGATGGTGATTCTCATCCAGAGAATCCCAATCGCATTAGGGTTATTTGGAACAAGCTCTTAGCCAATAACATTCCTCAAAGGTGTGTGGTTTTGAGTGGGAAAGAAGCAGAAGATAAATATTTAATGGCCGTTCACTCTGAAAATCATGTTAATTTGATTAGAAATATAAGCTCCAAACAGTTTGATTCACGAAGAAATAGGATTGCTTCAAAACTGAATTCAATTTACTTTAATGAGGGATCATCTGAAGCTGCTTACCATGCGGCCGGCTCCGTTTTAGAGCTTGCTGAGAGAATTGCAAAAGGGGATTTGAATTCTGGTGCTGCGATTGTTAGGCCTCCTGGACATCATGCTGAATATGATGAGGCGATGGGTTTTTGCCTATTCAATAATGTGGCTGTGGCAGCGAGTTTTCTATTAGATGAAAGACCAGAATTGGGTGTTAAAAAGATTTTGATTGTTGACTGGGATGTTCATCATGGAAATGGCACTCAAAAGACATTTTGGAATGATTCTCGGGTCTTATTTTTCTCTGTTCATAGGCATGAGTTTGGGAGTTTTTACCCAGGGAATGATGATGGCTTTTATACTATGATTGGAGAAGGACCAGGTACGGGATATAATATAAATGTCCCTTGGGAGCATGCAAGATGTGGGGATGCAGATTATCTTGCTGTTTGGGATCACATCTTGATCCCTGTTGCTAAGAAATTTGATCCTGACATGATTATAGTATCTGCAGGATTTGATGCAGCTGTTGGTGATCCTCTTGGTGGATGTTGTGTCACTCCATATGGATACTCAGTAATGTTGAAAAAGTTGATGGATTTTGCACAAGGTAAGATTATGTTGGCATTAGAAGGAGGATACAACCTTGATTCTATAGCAAATTCATTTCTTGCATGCATGAAAGTTCTTCTTGAAGACAAGCCTGTCAGTGGGTCTGTAGAGGCATACCCATTTGAGTCGACATGGCGTGTGATACAAGCGGTTCGCAAGAAATTAAGTCCCTACTGGCCTGCACTTGCAGATGAATTACCATTAAAGTTGACTATTCAAAATGCCCCTCATCCGCATATTCTTATCTCAAACTCTGACTCTGAAGGTGAGGATGAAAAGGCTCAAAATATTGTGTCAGAAATTGTTCAGGAGGTCATGGAACCCTTTTCGAAGCTGAAAGTTGAAGATAACCAAGATCAAGTGGCTACATCTTCTACCTCTTGGAGATCTGAGCTTTCAAAGATTGACATTTGGTATGCTTCTTTTGGATCAAATATGTGGAAGCCTAGATTCCTATGCTATATTGAAGGCGGTCAGGTAGATGGTATGAAGAAGCCATGTACTGGTTCAATGGACAAAAACCTGCCAAAAGAGATTTTGTGGAAAAATTTCCCACACAGACTATACTTTGGTCGTGATTCTACACGTACATGGGGCCCTGGGGGAGTTGCTTTTCTTCATCCTGATAATAGTGTTGGTGAAAAAACTTACATGTGCCTGTATAAAATAACACTAGAGCAGTTCAATGATGTTTTGCTTCAAGAAAATGTATCGAGTTATCAGATGAATTCACCTGTATTTGATTTGGCTGCACTACAGTCTATCAAGAACAAGGGGTCCATTTCTTTGGAGGTTTTCAAGAGCGGCTGGTACCGTAATGTTGTTTACTTGGGAAATGAGCGTGATATTCCTATACTGACTATGACGTGTTCGATTTCTGATGCTGAAAGCTTTAAACTTGGAGAGTTTCCCTTGCGCCGTCCTTCTAAAGAGTATGCCAATACCTTAGTGAAGGGCCTGGTTGAAAGTGGACAACTCTCAGAAGAGGAAGCCATTGCTTACATAGAAGAAGCTTCTTCGAAACCACTGTGTTAGCAACCTCAGTCTTATTTAATATCTTCATGTAAATGTTTGAAATCAGTAGGCTTGATGAAACAGTCATTCGTGCTCTTCTGACAGGAAGTTTGAAGTGTATTACTGTATGTCCTATGAATACTCCTGATTCTGGCCAAACCTTTCAATATTGGCAATTGGCATTGCTGTGGGTCTGAAGATCCCATTGATCCATGATGTGTTGCTGTTCATCATTCCTCCTACGATGACTGATGTAGAGACATTTTTACTAGCGATGCAGCTGATTTTCTTTTTATTTGGAATATTCTTGATTATTACGAGTATGATTGCACATGCATGGTC
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |