WERAM Information


Tag Content
WERAM ID WERAM-Brr-0068
Ensembl Protein ID Bra012984.1-P
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra012984 Bra012984.1 Bra012984.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 4.70e-133 444.3 23 344
HDAC Class-I 5.20e-34 119.2 24 335
Organism Brassica rapa
Domain Profile
  HDAC Class-II

    class-2.txt   2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsiyles 96 
+glvyde+m+kh+++++++ hpE+p+Ri+ i+++lq ag+ ++++ l ++ka++++lqlvH+++hv+l+++ + k+++ + ++++++ +siyl+
Bra012984.1-P 23 VGLVYDETMCKHDTPNGED--HPECPDRIRVIWEKLQLAGVSQRCVVLGGSKAEDKHLQLVHTKDHVSLVKSLStKKKDYRRNRIASQWNSIYLNG 116
78***************99..***************************************************998889999999************ PP
class-2.txt 97 ksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeifykdpkvl 189
+s++aa la+G+v+el++kv++gel++g+a+vRPPGHHae+++amGFClfnnvavaa++l+++ + vkkilivDwDvHhGnGtq++f+kdp+vl
Bra012984.1-P 117 SSSEAAFLAAGSVVELAEKVAEGELDCGYAIVRPPGHHAEPDEAMGFCLFNNVAVAASYLLDERPelgVKKILIVDWDVHHGNGTQKMFWKDPRVL 212
*************************************************************9887778**************************** PP
class-2.txt 190 ylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatlt 285
++S+HR+++g f+p+ ++g+++ vgeg+gegfn+Nv+w++g +gda+ylaa++++++p+akeF+Pd++l+saGfDaa gdplgg++vt+ +y+ +
Bra012984.1-P 213 FFSVHRHEHGGFYPAGDDGDYNMVGEGPGEGFNINVPWEQGRCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVML 308
************************************************************************************************ PP
class-2.txt 286 kqllklaggrvvlvlEGGynlkaiaeaveavvkaLl 321
k+l+++a+g++vl+lEGGynl++ia+++ a+v++Ll
Bra012984.1-P 309 KKLMDFAQGKIVLALEGGYNLDSIAKSSLACVQVLL 344
***********************************8 PP

  HDAC Class-I

    class-1.txt   4 ayaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeels.kelkkfnvgedcPvfd 96 
+yde++ ++ + g++hp p r++++ e + g+s++ ++ +ka+ ++l+ +h++++++++k+ ++++++ + +++n + +
Bra012984.1-P 24 GLVYDETMCKHDTpnGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGGSKAEDKHLQLVHTKDHVSLVKSLSTKKKDYRRnRIASQWNSIY---LNG 116
556777776665444999*************9999**********************************999888754413445555322...333 PP
class-1.txt 97 glfeycqlitGasleaakkLnkkeadi..ainwaGGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveeafyttdrv 185
e + l +G+ +e a+k+ ++e d ai G hha +ea Gfc n++ +a ll + k++l +d d+hhG+g ++ f + rv
Bra012984.1-P 117 SSSEAAFLAAGSVVELAEKVAEGELDCgyAIVRPPG-HHAEPDEAMGFCLFNNVAVAASYLLDErpelgVKKILIVDWDVHHGNGTQKMFWKDPRV 211
3456667899999*********99887225555555.********************99999742233368************************* PP
class-1.txt 186 mtvsfhkyge.effPg..tGdlsdvgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaec 277
+ s+h++++ +f+P+ Gd + vg++ g + +nvP ++g + D y + +++ +v + f+P++++l G D+ gD+lg ++ g++ +
Bra012984.1-P 212 LFFSVHRHEHgGFYPAgdDGDYNMVGEGPGEGFNINVPWEQGrCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVM 307
*******99735999733599999****************99799*************************************************** PP
class-1.txt 278 vkfvksf.nlpllvlGGGGYtlrnvaRc 304
+k + +f + ++++ GGY+l +a+
Bra012984.1-P 308 LKKLMDFaQGKIVLALEGGYNLDSIAKS 335
*******6666777779*****999975 PP

Protein Sequence
(Fasta)
MAMAGESSNN NYGDCDGKSH RKVGLVYDET MCKHDTPNGE DHPECPDRIR VIWEKLQLAG 60
VSQRCVVLGG SKAEDKHLQL VHTKDHVSLV KSLSTKKKDY RRNRIASQWN SIYLNGSSSE 120
AAFLAAGSVV ELAEKVAEGE LDCGYAIVRP PGHHAEPDEA MGFCLFNNVA VAASYLLDER 180
PELGVKKILI VDWDVHHGNG TQKMFWKDPR VLFFSVHRHE HGGFYPAGDD GDYNMVGEGP 240
GEGFNINVPW EQGRCGDADY LAAWDHILIP VAKEFNPDII LLSAGFDAAI GDPLGGCRVT 300
PYGYSVMLKK LMDFAQGKIV LALEGGYNLD SIAKSSLACV QVLLEDKPIQ GSSEAYPFES 360
TWRVIQAVRK KLSAYWPSLA DVLSSNLINQ KTPTPIIVFS SSDSETEDYA DDILDQMSRL 420
NIENHHVDTV STSWRRDLSK VDVWYASFGS NMWKPRFLCY IQGGQVEGMK KVCVGSMDKT 480
PPKQIMWESF PHRLFFGRES SVTWGVGGVA FINPLTDLND QTHMCLYRIT LEQFNDVLFQ 540
ENGLKVDSDS PLVDLDTLQL VEKKGSVPLA SGGWYGNVVC LGKECDVPIL TMTCTVAAVE 600
KFKSGEIPLR PPSEAYVNTM VRGLVEGGRL SEEEAKAYID NAASKPL 647
Nucleotide Sequence
(Fasta)
ATGGCAATGG CCGGTGAATC TTCTAATAAC AACTACGGAG ACTGTGACGG GAAGAGTCAT 60
AGAAAGGTGG GTCTTGTTTA TGACGAGACG ATGTGCAAAC ACGACACACC TAACGGAGAG 120
GATCACCCTG AGTGTCCTGA TCGCATCAGA GTTATCTGGG AGAAGCTCCA GCTCGCCGGA 180
GTCTCTCAAA GATGTGTGGT TCTTGGTGGT AGCAAAGCTG AAGACAAGCA TCTCCAATTG 240
GTTCACACAA AGGACCATGT TAGTTTAGTT AAGAGTTTAA GCACAAAGAA GAAAGATTAC 300
CGGAGAAACA GGATTGCTTC ACAGTGGAAT TCAATATATC TGAATGGAAG TTCATCTGAA 360
GCCGCGTTTC TTGCAGCTGG ATCTGTTGTA GAGTTGGCGG AGAAAGTTGC AGAAGGAGAG 420
TTAGATTGTG GGTATGCTAT TGTCAGGCCC CCAGGGCACC ATGCTGAGCC AGATGAAGCC 480
ATGGGTTTCT GTTTGTTCAA CAATGTAGCA GTCGCTGCTA GCTATTTACT TGATGAAAGA 540
CCTGAACTAG GTGTCAAGAA GATTCTGATA GTTGATTGGG ATGTCCATCA CGGAAATGGT 600
ACGCAGAAGA TGTTCTGGAA AGATCCTCGA GTACTATTTT TCTCTGTCCA CAGGCACGAG 660
CACGGAGGCT TCTATCCAGC GGGTGATGAT GGAGACTACA ACATGGTTGG GGAAGGTCCA 720
GGTGAAGGGT TTAACATAAA CGTTCCATGG GAACAAGGAA GATGCGGAGA TGCAGATTAT 780
CTTGCCGCAT GGGACCATAT CTTGATTCCT GTGGCGAAGG AGTTTAATCC TGATATTATT 840
TTGTTATCAG CTGGATTTGA TGCAGCTATT GGTGATCCAC TTGGGGGCTG TCGTGTTACA 900
CCATATGGAT ATTCAGTTAT GTTGAAGAAG TTGATGGATT TTGCACAAGG AAAGATTGTG 960
TTAGCGTTAG AGGGAGGGTA CAATCTTGAC TCAATTGCAA AGTCTTCTCT GGCATGTGTC 1020
CAAGTCTTGC TTGAAGACAA ACCAATTCAA GGTTCTTCTG AAGCTTACCC ATTCGAGTCT 1080
ACATGGCGTG TCATACAAGC GGTACGAAAG AAGCTGTCTG CATATTGGCC TTCACTTGCA 1140
GATGTATTAT CATCGAACCT TATTAACCAG AAAACTCCCA CTCCAATCAT CGTTTTCTCA 1200
AGCTCCGACT CTGAAACTGA AGACTACGCT GATGATATCC TGGATCAAAT GTCGAGACTC 1260
AACATTGAGA ACCACCACGT AGATACTGTC TCTACATCTT GGAGAAGAGA TCTCTCAAAG 1320
GTTGACGTTT GGTATGCCTC TTTTGGATCC AACATGTGGA AACCAAGGTT CCTTTGCTAT 1380
ATTCAAGGGG GACAAGTAGA GGGAATGAAA AAGGTCTGCG TTGGTTCAAT GGATAAAACT 1440
CCACCAAAGC AAATAATGTG GGAATCATTT CCACACAGGC TGTTCTTTGG ACGTGAATCG 1500
TCAGTTACTT GGGGTGTAGG AGGAGTTGCT TTTATCAACC CACTTACTGA TCTCAATGAT 1560
CAAACTCACA TGTGTTTGTA CAGAATCACG CTTGAGCAGT TCAACGATGT TCTGTTTCAG 1620
GAAAATGGAT TGAAAGTTGA TTCTGATTCT CCGCTTGTTG ATCTAGATAC TCTGCAGTTA 1680
GTAGAGAAGA AAGGATCCGT TCCACTTGCT TCGGGTGGCT GGTATGGAAA CGTAGTCTGT 1740
TTGGGGAAAG AATGCGACGT CCCTATACTT ACAATGACTT GCACAGTAGC TGCTGTTGAG 1800
AAGTTCAAAT CAGGTGAGAT CCCATTAAGA CCTCCTTCAG AAGCATATGT CAACACTATG 1860
GTGAGGGGAC TTGTTGAAGG AGGAAGATTA TCTGAAGAAG AAGCTAAGGC TTACATAGAC 1920
AATGCTGCAT CTAAACCTCT CTAG 1945
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bro-0134 Bo7g098310.1 Brassica oleracea 97 0.0 1294
WERAM-Art-0146 AT5G61060.1 Arabidopsis thaliana 84 0.0 1132
WERAM-Arl-0149 scaffold_802745.1 Arabidopsis lyrata 84 0.0 1112
WERAM-Thc-0031 EOY22062 Theobroma cacao 65 0.0 894
WERAM-Pot-0045 POPTR_0004s09180.1 Populus trichocarpa 68 0.0 891
WERAM-Viv-0107 VIT_17s0000g07280.t01 Vitis vinifera 65 0.0 874
WERAM-Glm-0045 GLYMA05G00460.1 Glycine max 64 0.0 871
WERAM-Met-0112 KEH32016 Medicago truncatula 62 0.0 813
WERAM-Mua-0066 GSMUA_Achr4P03250_001 Musa acuminata 60 0.0 798
WERAM-Sol-0055 Solyc03g115150.2.1 Solanum lycopersicum 58 0.0 783
WERAM-Prp-0049 EMJ12067 Prunus persica 68 0.0 780
WERAM-Ori-0088 BGIOSGA026083-PA Oryza indica 55 0.0 763
WERAM-Orgl-0076 OGLUM07G21150.1 Oryza glumaepatula 55 0.0 762
WERAM-Ors-0072 OS07T0602200-01 Oryza sativa 55 0.0 762
WERAM-Orr-0082 ORUFI07G22240.1 Oryza rufipogon 55 0.0 762
WERAM-Org-0078 ORGLA07G0164500.1 Oryza glaberrima 55 0.0 762
WERAM-Orbr-0087 OB07G26850.1 Oryza brachyantha 56 0.0 757
WERAM-Orni-0078 ONIVA07G19970.1 Oryza nivara 55 0.0 750
WERAM-Lep-0079 LPERR07G18450.1 Leersia perrieri 55 0.0 744
WERAM-Sei-0109 Si029091m Setaria italica 55 0.0 743
WERAM-Tra-0099 Traes_2DS_DFCAF1EA5.1 Triticum aestivum 54 0.0 742
WERAM-Zem-0143 GRMZM2G457889_P01 Zea mays 55 0.0 741
WERAM-Sob-0036 Sb02g038550.1 Sorghum bicolor 54 0.0 741
WERAM-Orp-0076 OPUNC07G19850.1 Oryza punctata 55 0.0 713
WERAM-Brd-0010 BRADI1G22240.1 Brachypodium distachyon 52 0.0 702
WERAM-Aet-0088 EMT31322 Aegilops tauschii 54 0.0 683
WERAM-Orl-0040 KN538895.1_FGP007 Oryza longistaminata 55 0.0 671
WERAM-Amt-0091 ERM99985 Amborella trichopoda 54 0.0 668
WERAM-Orb-0079 OBART07G21300.1 Oryza barthii 57 0.0 659
WERAM-Sem-0010 EFJ19764 Selaginella moellendorffii 50 2e-174 610
WERAM-Hov-0018 MLOC_16422.1 Hordeum vulgare 64 3e-129 459
WERAM-Tru-0053 TRIUR3_22556-P1 Triticum urartu 51 8e-129 458
WERAM-Php-0085 PP1S34_252V6.1 Physcomitrella patens 56 4e-114 409
WERAM-Ran-0201 ENSRNOP00000063689.2 Rattus norvegicus 46 3e-87 320
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 45 1e-85 315
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 44 6e-85 312
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 44 8e-85 312
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 44 4e-84 310
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 44 5e-84 309
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 46 7e-84 309
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 45 1e-83 308
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 45 1e-83 308
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 45 2e-83 307
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 47 3e-83 306
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 44 3e-83 306
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 46 6e-83 306
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 44 1e-82 305
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 44 1e-82 305
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 44 1e-82 305
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 44 1e-82 305
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 45 1e-82 304
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 44 2e-82 304
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 44 2e-82 304
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 46 2e-82 304
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 44 2e-82 304
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 43 2e-82 304
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 45 2e-82 304
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 45 3e-82 303
WERAM-Ten-0061 ENSTNIP00000000291.1 Tetraodon nigroviridis 44 3e-82 303
WERAM-Caa-0034 KGT64501 Candida albicans 44 4e-82 303
WERAM-Gaga-0067 ENSGALP00000010190.4 Gallus gallus 46 7e-82 302
WERAM-Meg-0108 ENSMGAP00000010913.2 Meleagris gallopavo 45 8e-82 302
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 43 1e-81 301
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 41 3e-81 300
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 46 3e-81 300
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 47 3e-81 300
WERAM-Orn-0108 ENSONIP00000011544.1 Oreochromis niloticus 44 4e-81 300
WERAM-Anp-0061 ENSAPLP00000006782.1 Anas platyrhynchos 46 8e-81 298
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 43 9e-81 298
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 42 1e-80 298
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 44 3e-80 297
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 43 3e-80 297
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 45 3e-80 296
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 42 4e-80 296
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 47 1e-79 294
WERAM-Orla-0013 ENSORLP00000001341.1 Oryzias latipes 44 2e-79 294
WERAM-Pes-0124 ENSPSIP00000014863.1 Pelodiscus sinensis 45 2e-79 294
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 39 6e-79 292
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 43 7e-79 292
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 47 1e-78 291
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 43 2e-78 291
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 43 3e-78 290
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 43 3e-78 290
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 44 4e-78 290
WERAM-Tag-0054 ENSTGUP00000003859.1 Taeniopygia guttata 44 6e-78 289
WERAM-Usm-0012 UM02102P0 Ustilago maydis 41 8e-78 288
WERAM-Tut-0141 ENSTTRP00000011664.1 Tursiops truncatus 41 1e-77 288
WERAM-Fia-0117 ENSFALP00000010126.1 Ficedula albicollis 40 2e-77 287
WERAM-Sah-0025 ENSSHAP00000002837.1 Sarcophilus harrisii 44 3e-77 287
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 41 4e-77 286
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 43 7e-77 285
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 42 1e-76 285
WERAM-Kop-0012 CAY68916 Komagataella pastoris 42 1e-76 285
WERAM-Nol-0194 ENSNLEP00000021748.1 Nomascus leucogenys 43 1e-76 285
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 42 2e-76 284
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 43 3e-76 283
WERAM-Pat-0158 ENSPTRP00000032389.5 Pan troglodytes 45 3e-76 283
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 42 3e-76 283
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 39 7e-76 282
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 43 1e-75 281
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 43 1e-75 281
WERAM-Poa-0162 ENSPPYP00000019901.2 Pongo abelii 44 2e-75 281
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 42 3e-75 280
WERAM-Leo-0108 ENSLOCP00000014009.1 Lepisosteus oculatus 41 6e-75 279
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 38 8e-75 279
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 41 9e-75 278
WERAM-Ere-0078 ENSEEUP00000006690.1 Erinaceus europaeus 41 1e-74 278
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 40 2e-74 277
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 41 4e-74 276
WERAM-Pug-0031 EFP89333 Puccinia graminis 39 4e-74 276
Created Date 25-Jun-2016