Tag |
Content |
WERAM ID |
WERAM-Brr-0068 |
Ensembl Protein ID |
Bra012984.1-P |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
4.70e-133 |
444.3 |
23 |
344 |
HDAC |
Class-I |
5.20e-34 |
119.2 |
24 |
335 |
|
Organism |
Brassica rapa |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsiyles 96 +glvyde+m+kh+++++++ hpE+p+Ri+ i+++lq ag+ ++++ l ++ka++++lqlvH+++hv+l+++ + k+++ + ++++++ +siyl+ Bra012984.1-P 23 VGLVYDETMCKHDTPNGED--HPECPDRIRVIWEKLQLAGVSQRCVVLGGSKAEDKHLQLVHTKDHVSLVKSLStKKKDYRRNRIASQWNSIYLNG 116 78***************99..***************************************************998889999999************ PP class-2.txt 97 ksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeifykdpkvl 189 +s++aa la+G+v+el++kv++gel++g+a+vRPPGHHae+++amGFClfnnvavaa++l+++ + vkkilivDwDvHhGnGtq++f+kdp+vl Bra012984.1-P 117 SSSEAAFLAAGSVVELAEKVAEGELDCGYAIVRPPGHHAEPDEAMGFCLFNNVAVAASYLLDERPelgVKKILIVDWDVHHGNGTQKMFWKDPRVL 212 *************************************************************9887778**************************** PP class-2.txt 190 ylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatlt 285 ++S+HR+++g f+p+ ++g+++ vgeg+gegfn+Nv+w++g +gda+ylaa++++++p+akeF+Pd++l+saGfDaa gdplgg++vt+ +y+ + Bra012984.1-P 213 FFSVHRHEHGGFYPAGDDGDYNMVGEGPGEGFNINVPWEQGRCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVML 308 ************************************************************************************************ PP class-2.txt 286 kqllklaggrvvlvlEGGynlkaiaeaveavvkaLl 321 k+l+++a+g++vl+lEGGynl++ia+++ a+v++Ll Bra012984.1-P 309 KKLMDFAQGKIVLALEGGYNLDSIAKSSLACVQVLL 344 ***********************************8 PP
HDAC Class-I
class-1.txt 4 ayaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeels.kelkkfnvgedcPvfd 96 +yde++ ++ + g++hp p r++++ e + g+s++ ++ +ka+ ++l+ +h++++++++k+ ++++++ + +++n + + Bra012984.1-P 24 GLVYDETMCKHDTpnGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGGSKAEDKHLQLVHTKDHVSLVKSLSTKKKDYRRnRIASQWNSIY---LNG 116 556777776665444999*************9999**********************************999888754413445555322...333 PP class-1.txt 97 glfeycqlitGasleaakkLnkkeadi..ainwaGGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveeafyttdrv 185 e + l +G+ +e a+k+ ++e d ai G hha +ea Gfc n++ +a ll + k++l +d d+hhG+g ++ f + rv Bra012984.1-P 117 SSSEAAFLAAGSVVELAEKVAEGELDCgyAIVRPPG-HHAEPDEAMGFCLFNNVAVAASYLLDErpelgVKKILIVDWDVHHGNGTQKMFWKDPRV 211 3456667899999*********99887225555555.********************99999742233368************************* PP class-1.txt 186 mtvsfhkyge.effPg..tGdlsdvgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaec 277 + s+h++++ +f+P+ Gd + vg++ g + +nvP ++g + D y + +++ +v + f+P++++l G D+ gD+lg ++ g++ + Bra012984.1-P 212 LFFSVHRHEHgGFYPAgdDGDYNMVGEGPGEGFNINVPWEQGrCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVM 307 *******99735999733599999****************99799*************************************************** PP class-1.txt 278 vkfvksf.nlpllvlGGGGYtlrnvaRc 304 +k + +f + ++++ GGY+l +a+ Bra012984.1-P 308 LKKLMDFaQGKIVLALEGGYNLDSIAKS 335 *******6666777779*****999975 PP
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Protein Sequence (Fasta) | MAMAGESSNN NYGDCDGKSH RKVGLVYDET MCKHDTPNGE DHPECPDRIR VIWEKLQLAG 60 VSQRCVVLGG SKAEDKHLQL VHTKDHVSLV KSLSTKKKDY RRNRIASQWN SIYLNGSSSE 120 AAFLAAGSVV ELAEKVAEGE LDCGYAIVRP PGHHAEPDEA MGFCLFNNVA VAASYLLDER 180 PELGVKKILI VDWDVHHGNG TQKMFWKDPR VLFFSVHRHE HGGFYPAGDD GDYNMVGEGP 240 GEGFNINVPW EQGRCGDADY LAAWDHILIP VAKEFNPDII LLSAGFDAAI GDPLGGCRVT 300 PYGYSVMLKK LMDFAQGKIV LALEGGYNLD SIAKSSLACV QVLLEDKPIQ GSSEAYPFES 360 TWRVIQAVRK KLSAYWPSLA DVLSSNLINQ KTPTPIIVFS SSDSETEDYA DDILDQMSRL 420 NIENHHVDTV STSWRRDLSK VDVWYASFGS NMWKPRFLCY IQGGQVEGMK KVCVGSMDKT 480 PPKQIMWESF PHRLFFGRES SVTWGVGGVA FINPLTDLND QTHMCLYRIT LEQFNDVLFQ 540 ENGLKVDSDS PLVDLDTLQL VEKKGSVPLA SGGWYGNVVC LGKECDVPIL TMTCTVAAVE 600 KFKSGEIPLR PPSEAYVNTM VRGLVEGGRL SEEEAKAYID NAASKPL 647Protein Fasta Sequence
>Bra012984.1-P|Class-I|Brassica rapa MAMAGESSNNNYGDCDGKSHRKVGLVYDETMCKHDTPNGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGGSKAEDKHLQLVHTKDHVSLVKSLSTKKKDYRRNRIASQWNSIYLNGSSSEAAFLAAGSVVELAEKVAEGELDCGYAIVRPPGHHAEPDEAMGFCLFNNVAVAASYLLDERPELGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEHGGFYPAGDDGDYNMVGEGPGEGFNINVPWEQGRCGDADYLAAWDHILIPVAKEFNPDIILLSAGFDAAIGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLDSIAKSSLACVQVLLEDKPIQGSSEAYPFESTWRVIQAVRKKLSAYWPSLADVLSSNLINQKTPTPIIVFSSSDSETEDYADDILDQMSRLNIENHHVDTVSTSWRRDLSKVDVWYASFGSNMWKPRFLCYIQGGQVEGMKKVCVGSMDKTPPKQIMWESFPHRLFFGRESSVTWGVGGVAFINPLTDLNDQTHMCLYRITLEQFNDVLFQENGLKVDSDSPLVDLDTLQLVEKKGSVPLASGGWYGNVVCLGKECDVPILTMTCTVAAVEKFKSGEIPLRPPSEAYVNTMVRGLVEGGRLSEEEAKAYIDNAASKPL
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Nucleotide Sequence (Fasta) | ATGGCAATGG CCGGTGAATC TTCTAATAAC AACTACGGAG ACTGTGACGG GAAGAGTCAT 60 AGAAAGGTGG GTCTTGTTTA TGACGAGACG ATGTGCAAAC ACGACACACC TAACGGAGAG 120 GATCACCCTG AGTGTCCTGA TCGCATCAGA GTTATCTGGG AGAAGCTCCA GCTCGCCGGA 180 GTCTCTCAAA GATGTGTGGT TCTTGGTGGT AGCAAAGCTG AAGACAAGCA TCTCCAATTG 240 GTTCACACAA AGGACCATGT TAGTTTAGTT AAGAGTTTAA GCACAAAGAA GAAAGATTAC 300 CGGAGAAACA GGATTGCTTC ACAGTGGAAT TCAATATATC TGAATGGAAG TTCATCTGAA 360 GCCGCGTTTC TTGCAGCTGG ATCTGTTGTA GAGTTGGCGG AGAAAGTTGC AGAAGGAGAG 420 TTAGATTGTG GGTATGCTAT TGTCAGGCCC CCAGGGCACC ATGCTGAGCC AGATGAAGCC 480 ATGGGTTTCT GTTTGTTCAA CAATGTAGCA GTCGCTGCTA GCTATTTACT TGATGAAAGA 540 CCTGAACTAG GTGTCAAGAA GATTCTGATA GTTGATTGGG ATGTCCATCA CGGAAATGGT 600 ACGCAGAAGA TGTTCTGGAA AGATCCTCGA GTACTATTTT TCTCTGTCCA CAGGCACGAG 660 CACGGAGGCT TCTATCCAGC GGGTGATGAT GGAGACTACA ACATGGTTGG GGAAGGTCCA 720 GGTGAAGGGT TTAACATAAA CGTTCCATGG GAACAAGGAA GATGCGGAGA TGCAGATTAT 780 CTTGCCGCAT GGGACCATAT CTTGATTCCT GTGGCGAAGG AGTTTAATCC TGATATTATT 840 TTGTTATCAG CTGGATTTGA TGCAGCTATT GGTGATCCAC TTGGGGGCTG TCGTGTTACA 900 CCATATGGAT ATTCAGTTAT GTTGAAGAAG TTGATGGATT TTGCACAAGG AAAGATTGTG 960 TTAGCGTTAG AGGGAGGGTA CAATCTTGAC TCAATTGCAA AGTCTTCTCT GGCATGTGTC 1020 CAAGTCTTGC TTGAAGACAA ACCAATTCAA GGTTCTTCTG AAGCTTACCC ATTCGAGTCT 1080 ACATGGCGTG TCATACAAGC GGTACGAAAG AAGCTGTCTG CATATTGGCC TTCACTTGCA 1140 GATGTATTAT CATCGAACCT TATTAACCAG AAAACTCCCA CTCCAATCAT CGTTTTCTCA 1200 AGCTCCGACT CTGAAACTGA AGACTACGCT GATGATATCC TGGATCAAAT GTCGAGACTC 1260 AACATTGAGA ACCACCACGT AGATACTGTC TCTACATCTT GGAGAAGAGA TCTCTCAAAG 1320 GTTGACGTTT GGTATGCCTC TTTTGGATCC AACATGTGGA AACCAAGGTT CCTTTGCTAT 1380 ATTCAAGGGG GACAAGTAGA GGGAATGAAA AAGGTCTGCG TTGGTTCAAT GGATAAAACT 1440 CCACCAAAGC AAATAATGTG GGAATCATTT CCACACAGGC TGTTCTTTGG ACGTGAATCG 1500 TCAGTTACTT GGGGTGTAGG AGGAGTTGCT TTTATCAACC CACTTACTGA TCTCAATGAT 1560 CAAACTCACA TGTGTTTGTA CAGAATCACG CTTGAGCAGT TCAACGATGT TCTGTTTCAG 1620 GAAAATGGAT TGAAAGTTGA TTCTGATTCT CCGCTTGTTG ATCTAGATAC TCTGCAGTTA 1680 GTAGAGAAGA AAGGATCCGT TCCACTTGCT TCGGGTGGCT GGTATGGAAA CGTAGTCTGT 1740 TTGGGGAAAG AATGCGACGT CCCTATACTT ACAATGACTT GCACAGTAGC TGCTGTTGAG 1800 AAGTTCAAAT CAGGTGAGAT CCCATTAAGA CCTCCTTCAG AAGCATATGT CAACACTATG 1860 GTGAGGGGAC TTGTTGAAGG AGGAAGATTA TCTGAAGAAG AAGCTAAGGC TTACATAGAC 1920 AATGCTGCAT CTAAACCTCT CTAG
1945Nucleotide Fasta Sequence
>Bra012984.1-P|Class-I|Brassica rapa ATGGCAATGGCCGGTGAATCTTCTAATAACAACTACGGAGACTGTGACGGGAAGAGTCATAGAAAGGTGGGTCTTGTTTATGACGAGACGATGTGCAAACACGACACACCTAACGGAGAGGATCACCCTGAGTGTCCTGATCGCATCAGAGTTATCTGGGAGAAGCTCCAGCTCGCCGGAGTCTCTCAAAGATGTGTGGTTCTTGGTGGTAGCAAAGCTGAAGACAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAGTTTAGTTAAGAGTTTAAGCACAAAGAAGAAAGATTACCGGAGAAACAGGATTGCTTCACAGTGGAATTCAATATATCTGAATGGAAGTTCATCTGAAGCCGCGTTTCTTGCAGCTGGATCTGTTGTAGAGTTGGCGGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGGTATGCTATTGTCAGGCCCCCAGGGCACCATGCTGAGCCAGATGAAGCCATGGGTTTCTGTTTGTTCAACAATGTAGCAGTCGCTGCTAGCTATTTACTTGATGAAAGACCTGAACTAGGTGTCAAGAAGATTCTGATAGTTGATTGGGATGTCCATCACGGAAATGGTACGCAGAAGATGTTCTGGAAAGATCCTCGAGTACTATTTTTCTCTGTCCACAGGCACGAGCACGGAGGCTTCTATCCAGCGGGTGATGATGGAGACTACAACATGGTTGGGGAAGGTCCAGGTGAAGGGTTTAACATAAACGTTCCATGGGAACAAGGAAGATGCGGAGATGCAGATTATCTTGCCGCATGGGACCATATCTTGATTCCTGTGGCGAAGGAGTTTAATCCTGATATTATTTTGTTATCAGCTGGATTTGATGCAGCTATTGGTGATCCACTTGGGGGCTGTCGTGTTACACCATATGGATATTCAGTTATGTTGAAGAAGTTGATGGATTTTGCACAAGGAAAGATTGTGTTAGCGTTAGAGGGAGGGTACAATCTTGACTCAATTGCAAAGTCTTCTCTGGCATGTGTCCAAGTCTTGCTTGAAGACAAACCAATTCAAGGTTCTTCTGAAGCTTACCCATTCGAGTCTACATGGCGTGTCATACAAGCGGTACGAAAGAAGCTGTCTGCATATTGGCCTTCACTTGCAGATGTATTATCATCGAACCTTATTAACCAGAAAACTCCCACTCCAATCATCGTTTTCTCAAGCTCCGACTCTGAAACTGAAGACTACGCTGATGATATCCTGGATCAAATGTCGAGACTCAACATTGAGAACCACCACGTAGATACTGTCTCTACATCTTGGAGAAGAGATCTCTCAAAGGTTGACGTTTGGTATGCCTCTTTTGGATCCAACATGTGGAAACCAAGGTTCCTTTGCTATATTCAAGGGGGACAAGTAGAGGGAATGAAAAAGGTCTGCGTTGGTTCAATGGATAAAACTCCACCAAAGCAAATAATGTGGGAATCATTTCCACACAGGCTGTTCTTTGGACGTGAATCGTCAGTTACTTGGGGTGTAGGAGGAGTTGCTTTTATCAACCCACTTACTGATCTCAATGATCAAACTCACATGTGTTTGTACAGAATCACGCTTGAGCAGTTCAACGATGTTCTGTTTCAGGAAAATGGATTGAAAGTTGATTCTGATTCTCCGCTTGTTGATCTAGATACTCTGCAGTTAGTAGAGAAGAAAGGATCCGTTCCACTTGCTTCGGGTGGCTGGTATGGAAACGTAGTCTGTTTGGGGAAAGAATGCGACGTCCCTATACTTACAATGACTTGCACAGTAGCTGCTGTTGAGAAGTTCAAATCAGGTGAGATCCCATTAAGACCTCCTTCAGAAGCATATGTCAACACTATGGTGAGGGGACTTGTTGAAGGAGGAAGATTATCTGAAGAAGAAGCTAAGGCTTACATAGACAATGCTGCATCTAAACCTCTCTAG
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Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |