WERAM Information


Tag Content
WERAM ID WERAM-Zem-0143
Ensembl Protein ID GRMZM2G457889_P01
Gene Name rpd3
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
GRMZM2G457889 GRMZM2G457889_T01 GRMZM2G457889_P01
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 3.10e-124 416 16 337
HDAC Class-I 7.30e-38 132.5 30 334
Organism Zea mays
Domain Profile
  HDAC Class-II

        class-2.txt   3 glvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsiy 93 
gl+yde+m++h+++++++ hpE+peR+++i+++l++ag++++++ lka++a+++ +++vHs++h++l+++ + + + + ++++ +++siy
GRMZM2G457889_P01 16 GLLYDERMCAHATPNGEE--HPENPERLRSIWRKLNAAGVASRCVALKAKEAEDKYIASVHSKRHIKLMKEISsTIYDASRNKIARKFNSIY 105
799***********9999..***************************************************9989999999*********** PP
class-2.txt 94 lesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeif 182
l++ s+++a la+G+v+e+++kv++gel+ ++a+vRPPGHHae+++amGFClfnnvavaa++l+++ + +kkilivDwDvHhGnGtq++f
GRMZM2G457889_P01 106 LNKGSSESAVLAAGSVIEVAEKVAAGELSSAIALVRPPGHHAEHDEAMGFCLFNNVAVAANYLLNERPdlgIKKILIVDWDVHHGNGTQKMF 197
****************************************************************9987788********************* PP
class-2.txt 183 ykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplggl 274
y+dp+vl++S+HR+d gsf+p+ g+++ +ge++g+g+n+Nv+w++g++gda+y+aa+++v+lp++k F+Pd++lvsaGfDaa gdplgg+
GRMZM2G457889_P01 198 YDDPRVLFFSVHRFDYGSFYPSEGDASHCFIGEEAGKGYNINVPWEHGKCGDADYIAAWDHVLLPVTKVFDPDIILVSAGFDAALGDPLGGC 289
*********************99999999*************************************************************** PP
class-2.txt 275 svtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
++t+++ya l +ll++a+gr+v++lEGGynl++ia++v a++k+Llg
GRMZM2G457889_P01 290 CITPNGYALLLTKLLGFAQGRIVMALEGGYNLRSIANSVCACAKVLLG 337
**********************************************96 PP

  HDAC Class-I

        class-1.txt  16 ygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeels.kelkkfnvgedcPvfdglfeycqlit 106
g++hp p+rl+ + + + g+ + +k+k+a+ ++++++hs+ +i+++k+++++ + k +kfn + +g e + l +
GRMZM2G457889_P01 30 NGEEHPENPERLRSIWRKLNAAGVASRCVALKAKEAEDKYIASVHSKRHIKLMKEISSTIYDASRnKIARKFNS---IYLNKGSSESAVLAA 118
4899************999**************************************99998666256678884...567899999****** PP
class-1.txt 107 GasleaakkLnkkeadiainwa.GGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveeafyttdrvmtvsfhk 192
G+ +e a+k+ +e ai hha ++ea Gfc n++ +a ll + k++l +d d+hhG+g ++ fy rv+ s+h+
GRMZM2G457889_P01 119 GSVIEVAEKVAAGELSSAIALVrPPGHHAEHDEAMGFCLFNNVAVAANYLLNErpdlgIKKILIVDWDVHHGNGTQKMFYDDPRVLFFSVHR 210
************99888887641456*********************9999852333368******************************** PP
class-1.txt 193 yge.effPgtGdlsd..vgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkf 280
++ +f+P+ Gd s +g+e gk y +nvP ++g + D y + +v+ +v+++f+P+++++ G D+ gD+lg ++ +g+a +
GRMZM2G457889_P01 211 FDYgSFYPSEGDASHcfIGEEAGKGYNINVPWEHGkCGDADYIAAWDHVLLPVTKVFDPDIILVSAGFDAALGDPLGGCCITPNGYALLLTK 302
98525********98557999*************9899**************************************************9999 PP
class-1.txt 281 vksf.nlpllvlGGGGYtlrnvaRcwtyetav 311
+ f + +++ GGY+lr +a + v
GRMZM2G457889_P01 303 LLGFaQGRIVMALEGGYNLRSIANSVCACAKV 334
99996778888889********9988776666 PP

Protein Sequence
(Fasta)
MAEPAPAPPV TAPLVGLLYD ERMCAHATPN GEEHPENPER LRSIWRKLNA AGVASRCVAL 60
KAKEAEDKYI ASVHSKRHIK LMKEISSTIY DASRNKIARK FNSIYLNKGS SESAVLAAGS 120
VIEVAEKVAA GELSSAIALV RPPGHHAEHD EAMGFCLFNN VAVAANYLLN ERPDLGIKKI 180
LIVDWDVHHG NGTQKMFYDD PRVLFFSVHR FDYGSFYPSE GDASHCFIGE EAGKGYNINV 240
PWEHGKCGDA DYIAAWDHVL LPVTKVFDPD IILVSAGFDA ALGDPLGGCC ITPNGYALLL 300
TKLLGFAQGR IVMALEGGYN LRSIANSVCA CAKVLLGDKF TFNTPEMQPF ESTWRVIQAV 360
RNELKTCWPV LSSKLPENVS LRIKPAPSEL YASDSESDSE DVDELLGTVA SVSVIEATGV 420
AISEHLSKMK LDDDSLAVKT NSSCSAAEQH PVDSVKVHNN ASVVLTKKIS DLSLEWRSDL 480
SKTDVWYASF GSNMWRPRFL CYIQGGKAEG MNIPCCGSRD TSSPKGTVWK TVPHRLLFGR 540
SSTPCWGTGG VAFLNPEINY NEKSYVCMYK ITLEQFNDIL FQENRLVLED GKDGNTVYPD 600
SPLIGSSEIK FISTNRAVHL EPIKDSWYSN VLYLGNEDEV PILTMTCPAS DIERYKSGEL 660
RLAPPSETYA ATLIKGLVEG KQMDADGAAS YINAAAARAL
Nucleotide Sequence
(Fasta)
CAAGCCCTCC AACTGAGTCG TCGGAGCGGA CGTCGAGTCG TCGATACGCC TGAACCCCAG 60
CTTTCCACTC GCCTCGCTCG CCCCTTTCGC GTCCACCGAC CCCGACCCCG ACCCCGATCC 120
CCGCCGGTGC TTCGCCACCC CGATCCCCAC CGCGCGATGG CGGAGCCGGC TCCGGCTCCC 180
CCGGTGACCG CGCCGCTGGT GGGGCTGCTG TACGACGAGC GGATGTGCGC GCACGCGACG 240
CCCAACGGGG AGGAACACCC GGAGAACCCC GAGCGGCTGC GCTCCATCTG GCGCAAGCTC 300
AACGCCGCGG GCGTCGCGTC CAGGTGTGTG GCCCTTAAGG CAAAGGAAGC TGAGGACAAG 360
TATATAGCTT CTGTTCACAG CAAGAGGCAT ATAAAGCTGA TGAAGGAAAT TAGCTCAACA 420
ATATATGATG CCAGCAGGAA CAAGATTGCT AGGAAATTCA ATTCCATTTA CTTGAATAAG 480
GGTTCCTCGG AATCTGCTGT TCTTGCAGCT GGTTCTGTCA TAGAGGTAGC TGAGAAAGTT 540
GCTGCAGGTG AGTTAAGTTC TGCTATTGCT CTAGTCAGAC CTCCAGGCCA CCATGCAGAA 600
CATGATGAGG CTATGGGATT TTGCCTCTTC AACAATGTGG CAGTTGCAGC TAATTATCTC 660
TTAAACGAGA GGCCTGATTT AGGTATCAAG AAGATATTGA TTGTCGATTG GGATGTTCAC 720
CATGGAAATG GCACACAGAA AATGTTTTAC GATGATCCTC GTGTATTGTT CTTCTCAGTT 780
CACAGATTTG ATTATGGAAG CTTCTATCCT TCTGAAGGGG ATGCTTCTCA TTGTTTCATC 840
GGGGAAGAAG CTGGTAAAGG GTATAACATC AATGTTCCCT GGGAGCATGG CAAGTGTGGT 900
GATGCTGATT ATATTGCTGC ATGGGACCAT GTACTGCTTC CTGTCACTAA AGTTTTTGAT 960
CCTGATATAA TTCTGGTATC AGCGGGGTTT GATGCAGCAT TGGGTGATCC TCTCGGTGGG 1020
TGCTGCATTA CACCAAATGG ATATGCACTG CTACTAACAA AGTTGTTAGG ATTTGCTCAA 1080
GGAAGGATAG TGATGGCCCT TGAAGGAGGT TATAACCTTA GGTCCATAGC GAACTCAGTT 1140
TGTGCTTGTG CAAAAGTTCT CTTGGGAGAC AAATTCACAT TCAACACTCC AGAGATGCAA 1200
CCATTTGAAT CTACATGGAG AGTAATACAA GCGGTACGCA ATGAATTGAA GACATGCTGG 1260
CCTGTTCTGA GTAGCAAGTT GCCAGAAAAT GTATCATTGA GGATTAAGCC TGCACCAAGC 1320
GAGCTCTACG CTTCTGATTC TGAATCTGAT AGTGAAGATG TTGATGAGCT CCTTGGCACT 1380
GTTGCATCTG TCAGTGTTAT TGAAGCTACT GGTGTTGCTA TAAGTGAACA CCTCTCAAAG 1440
ATGAAACTTG ATGATGACAG CCTTGCAGTG AAGACTAACT CAAGTTGCTC AGCAGCAGAA 1500
CAGCATCCAG TTGATTCAGT AAAAGTACAT AACAATGCAT CTGTTGTGCT GACCAAAAAA 1560
ATATCTGATT TATCTCTTGA GTGGCGATCA GATTTATCGA AAACTGATGT CTGGTATGCC 1620
AGTTTTGGAT CAAACATGTG GAGACCAAGA TTTCTATGTT ATATTCAAGG AGGGAAGGCT 1680
GAGGGTATGA ATATACCATG CTGCGGATCA CGTGACACAA GCTCACCAAA AGGAACCGTG 1740
TGGAAGACTG TACCTCACAG GTTGCTTTTC GGTAGATCGT CTACCCCTTG TTGGGGAACT 1800
GGTGGTGTGG CTTTTCTCAA CCCTGAGATA AACTACAATG AGAAGTCGTA TGTCTGCATG 1860
TACAAAATAA CGTTGGAGCA GTTCAATGAC ATCTTGTTTC AGGAGAATCG TTTAGTGCTG 1920
GAGGATGGCA AAGACGGAAA CACTGTGTAT CCTGACTCTC CTTTGATTGG TTCATCTGAA 1980
ATCAAGTTTA TATCTACAAA CAGAGCTGTT CATCTTGAAC CTATTAAGGA TAGCTGGTAC 2040
TCCAATGTAC TTTATCTTGG GAATGAGGAT GAAGTTCCAA TTCTAACTAT GACGTGCCCC 2100
GCATCAGATA TTGAGAGGTA TAAATCTGGT GAGCTGCGTT TAGCACCTCC ATCAGAGACG 2160
TATGCGGCCA CTCTGATAAA GGGACTAGTG GAAGGCAAGC AAATGGATGC GGACGGAGCT 2220
GCCAGCTACA TCAACGCTGC TGCTGCAAGA GCCTTGTGAA GGCGGCTTCA GCGTGTGCTT 2280
TTGTACAGCC AGTAAGGAGT AGCAAGGATA CACTATCTGT TAGCGTGGCG ACACCAGGAA 2340
ACCTTCATTG TCCGCAAATG GAGAACTTGG ATCCAATTTG AATTGGGAAG CATGATTCGA 2400
GCTTGCCCTA GCTTGATTAC TGGTGAACGG TGATCTCCCC TGGCTGGTTG ATTCTGGGAG 2460
AAACACTAGC TGTGTCGGGG TGGAGCAACA CTAGTTGGCG GTTGCAACAG GTGCTCTCAC 2520
TGCACTGGTA TCGTGCTTGT CTGACATACC GTAGTATTTG CATGGCATGC TGGTGATGGT 2580
ATTTGTGCAA TTACTGCATT ATGTTCTGT
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Sob-0036 Sb02g038550.1 Sorghum bicolor 91 0.0 1238
WERAM-Sei-0109 Si029091m Setaria italica 89 0.0 1204
WERAM-Orgl-0076 OGLUM07G21150.1 Oryza glumaepatula 79 0.0 1077
WERAM-Ors-0072 OS07T0602200-01 Oryza sativa 79 0.0 1077
WERAM-Orr-0082 ORUFI07G22240.1 Oryza rufipogon 79 0.0 1077
WERAM-Ori-0088 BGIOSGA026083-PA Oryza indica 79 0.0 1077
WERAM-Org-0078 ORGLA07G0164500.1 Oryza glaberrima 79 0.0 1075
WERAM-Lep-0079 LPERR07G18450.1 Leersia perrieri 79 0.0 1074
WERAM-Orni-0078 ONIVA07G19970.1 Oryza nivara 79 0.0 1073
WERAM-Orbr-0087 OB07G26850.1 Oryza brachyantha 78 0.0 1058
WERAM-Tra-0099 Traes_2DS_DFCAF1EA5.1 Triticum aestivum 75 0.0 1028
WERAM-Orp-0076 OPUNC07G19850.1 Oryza punctata 75 0.0 1019
WERAM-Brd-0010 BRADI1G22240.1 Brachypodium distachyon 71 0.0 981
WERAM-Aet-0088 EMT31322 Aegilops tauschii 75 0.0 949
WERAM-Orl-0040 KN538895.1_FGP007 Oryza longistaminata 74 0.0 934
WERAM-Orb-0079 OBART07G21300.1 Oryza barthii 76 0.0 925
WERAM-Mua-0066 GSMUA_Achr4P03250_001 Musa acuminata 60 0.0 808
WERAM-Pot-0045 POPTR_0004s09180.1 Populus trichocarpa 55 0.0 753
WERAM-Viv-0107 VIT_17s0000g07280.t01 Vitis vinifera 56 0.0 752
WERAM-Thc-0031 EOY22062 Theobroma cacao 56 0.0 744
WERAM-Art-0146 AT5G61060.1 Arabidopsis thaliana 55 0.0 732
WERAM-Arl-0149 scaffold_802745.1 Arabidopsis lyrata 55 0.0 731
WERAM-Glm-0045 GLYMA05G00460.1 Glycine max 55 0.0 729
WERAM-Brr-0068 Bra012984.1-P Brassica rapa 54 0.0 728
WERAM-Bro-0134 Bo7g098310.1 Brassica oleracea 54 0.0 725
WERAM-Sol-0055 Solyc03g115150.2.1 Solanum lycopersicum 53 0.0 698
WERAM-Met-0112 KEH32016 Medicago truncatula 54 0.0 695
WERAM-Prp-0049 EMJ12067 Prunus persica 57 0.0 651
WERAM-Amt-0091 ERM99985 Amborella trichopoda 53 0.0 647
WERAM-Tru-0053 TRIUR3_22556-P1 Triticum urartu 80 5e-171 598
WERAM-Hov-0018 MLOC_16422.1 Hordeum vulgare 85 7e-171 598
WERAM-Sem-0022 EFJ08599 Selaginella moellendorffii 57 2e-115 414
WERAM-Php-0085 PP1S34_252V6.1 Physcomitrella patens 52 2e-111 400
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 43 4e-85 313
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 45 1e-84 311
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 47 1e-84 311
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 45 2e-84 311
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 44 1e-82 305
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 45 2e-82 304
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 42 2e-82 304
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 43 3e-82 303
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 47 4e-82 303
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 42 8e-82 302
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 43 3e-81 300
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 43 5e-81 300
WERAM-Ran-0201 ENSRNOP00000063689.2 Rattus norvegicus 44 6e-81 299
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 43 6e-81 299
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 43 7e-81 299
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 43 1e-80 298
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 47 1e-80 298
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 44 1e-80 298
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 42 2e-80 298
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 44 5e-80 296
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 40 7e-80 295
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 46 8e-80 295
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 42 1e-79 295
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 42 6e-79 292
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 45 2e-78 291
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 42 1e-77 288
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 44 2e-77 288
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 46 3e-77 287
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 45 3e-77 287
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 43 3e-77 286
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 45 5e-77 286
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 45 5e-77 286
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 45 6e-77 286
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 45 6e-77 286
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 45 6e-77 286
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 45 8e-77 285
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 44 8e-77 285
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 43 9e-77 285
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 45 9e-76 282
WERAM-Caa-0034 KGT64501 Candida albicans 40 1e-75 281
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 44 2e-75 281
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 43 2e-74 277
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 42 3e-74 277
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 41 5e-74 276
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 40 3e-73 273
WERAM-Poa-0196 ENSPPYP00000022747.2 Pongo abelii 42 4e-73 273
WERAM-Fia-0117 ENSFALP00000010126.1 Ficedula albicollis 40 1e-72 271
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 40 1e-72 271
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 44 1e-72 271
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 39 2e-72 271
WERAM-Kop-0012 CAY68916 Komagataella pastoris 40 2e-72 270
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 43 3e-72 270
WERAM-Tut-0056 ENSTTRP00000004443.1 Tursiops truncatus 45 4e-72 270
WERAM-Sah-0012 ENSSHAP00000001165.1 Sarcophilus harrisii 42 4e-72 270
WERAM-Nol-0078 ENSNLEP00000009627.2 Nomascus leucogenys 40 6e-72 269
WERAM-Gaa-0053 ENSGACP00000006953.1 Gasterosteus aculeatus 40 7e-72 269
WERAM-Pes-0141 ENSPSIP00000016742.1 Pelodiscus sinensis 39 1e-71 268
WERAM-Meg-0084 ENSMGAP00000008226.2 Meleagris gallopavo 40 1e-71 268
WERAM-Pat-0185 ENSPTRP00000037550.5 Pan troglodytes 41 2e-71 268
WERAM-Anp-0022 ENSAPLP00000003127.1 Anas platyrhynchos 40 3e-71 267
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 39 5e-71 266
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 39 5e-71 266
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 42 6e-71 266
WERAM-Gaga-0090 ENSGALP00000014065.4 Gallus gallus 39 1e-70 265
WERAM-Orla-0013 ENSORLP00000001341.1 Oryzias latipes 39 1e-70 265
WERAM-Scp-0036 SPBC800.03.1:pep Schizosaccharomyces pombe 44 4e-70 263
WERAM-Coi-0028 EAS30926 Coccidioides immitis 43 8e-70 262
WERAM-Tas-0021 ENSTSYP00000002661.1 Tarsius syrichta 42 1e-69 262
WERAM-Tag-0059 ENSTGUP00000004152.1 Taeniopygia guttata 41 4e-69 260
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 42 6e-69 259
WERAM-Leo-0130 ENSLOCP00000016135.1 Lepisosteus oculatus 41 8e-69 259
WERAM-Mao-0002 MGG_01076T0 Magnaporthe oryzae 39 9e-69 259
WERAM-Aso-0015 CADAORAP00001816 Aspergillus oryzae 43 5e-68 256
WERAM-Trv-0041 EHK18675 Trichoderma virens 39 6e-68 256
WERAM-Sot-0015 PGSC0003DMT400014582 Solanum tuberosum 41 8e-68 256
WERAM-Gag-0014 GGTG_04308T0 Gaeumannomyces graminis 38 1e-67 255
WERAM-Cag-0018 CAG60803 Candida glabrata 40 1e-67 254
Created Date 25-Jun-2016