Tag |
Content |
WERAM ID |
WERAM-Zem-0143 |
Ensembl Protein ID |
GRMZM2G457889_P01 |
Gene Name |
rpd3 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
3.10e-124 |
416 |
16 |
337 |
HDAC |
Class-I |
7.30e-38 |
132.5 |
30 |
334 |
|
Organism |
Zea mays |
Domain Profile |
HDAC Class-II
class-2.txt 3 glvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsiy 93 gl+yde+m++h+++++++ hpE+peR+++i+++l++ag++++++ lka++a+++ +++vHs++h++l+++ + + + + ++++ +++siy GRMZM2G457889_P01 16 GLLYDERMCAHATPNGEE--HPENPERLRSIWRKLNAAGVASRCVALKAKEAEDKYIASVHSKRHIKLMKEISsTIYDASRNKIARKFNSIY 105 799***********9999..***************************************************9989999999*********** PP class-2.txt 94 lesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeif 182 l++ s+++a la+G+v+e+++kv++gel+ ++a+vRPPGHHae+++amGFClfnnvavaa++l+++ + +kkilivDwDvHhGnGtq++f GRMZM2G457889_P01 106 LNKGSSESAVLAAGSVIEVAEKVAAGELSSAIALVRPPGHHAEHDEAMGFCLFNNVAVAANYLLNERPdlgIKKILIVDWDVHHGNGTQKMF 197 ****************************************************************9987788********************* PP class-2.txt 183 ykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplggl 274 y+dp+vl++S+HR+d gsf+p+ g+++ +ge++g+g+n+Nv+w++g++gda+y+aa+++v+lp++k F+Pd++lvsaGfDaa gdplgg+ GRMZM2G457889_P01 198 YDDPRVLFFSVHRFDYGSFYPSEGDASHCFIGEEAGKGYNINVPWEHGKCGDADYIAAWDHVLLPVTKVFDPDIILVSAGFDAALGDPLGGC 289 *********************99999999*************************************************************** PP class-2.txt 275 svtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 ++t+++ya l +ll++a+gr+v++lEGGynl++ia++v a++k+Llg GRMZM2G457889_P01 290 CITPNGYALLLTKLLGFAQGRIVMALEGGYNLRSIANSVCACAKVLLG 337 **********************************************96 PP
HDAC Class-I
class-1.txt 16 ygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeels.kelkkfnvgedcPvfdglfeycqlit 106 g++hp p+rl+ + + + g+ + +k+k+a+ ++++++hs+ +i+++k+++++ + k +kfn + +g e + l + GRMZM2G457889_P01 30 NGEEHPENPERLRSIWRKLNAAGVASRCVALKAKEAEDKYIASVHSKRHIKLMKEISSTIYDASRnKIARKFNS---IYLNKGSSESAVLAA 118 4899************999**************************************99998666256678884...567899999****** PP class-1.txt 107 GasleaakkLnkkeadiainwa.GGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveeafyttdrvmtvsfhk 192 G+ +e a+k+ +e ai hha ++ea Gfc n++ +a ll + k++l +d d+hhG+g ++ fy rv+ s+h+ GRMZM2G457889_P01 119 GSVIEVAEKVAAGELSSAIALVrPPGHHAEHDEAMGFCLFNNVAVAANYLLNErpdlgIKKILIVDWDVHHGNGTQKMFYDDPRVLFFSVHR 210 ************99888887641456*********************9999852333368******************************** PP class-1.txt 193 yge.effPgtGdlsd..vgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkf 280 ++ +f+P+ Gd s +g+e gk y +nvP ++g + D y + +v+ +v+++f+P+++++ G D+ gD+lg ++ +g+a + GRMZM2G457889_P01 211 FDYgSFYPSEGDASHcfIGEEAGKGYNINVPWEHGkCGDADYIAAWDHVLLPVTKVFDPDIILVSAGFDAALGDPLGGCCITPNGYALLLTK 302 98525********98557999*************9899**************************************************9999 PP class-1.txt 281 vksf.nlpllvlGGGGYtlrnvaRcwtyetav 311 + f + +++ GGY+lr +a + v GRMZM2G457889_P01 303 LLGFaQGRIVMALEGGYNLRSIANSVCACAKV 334 99996778888889********9988776666 PP
|
Protein Sequence (Fasta) | MAEPAPAPPV TAPLVGLLYD ERMCAHATPN GEEHPENPER LRSIWRKLNA AGVASRCVAL 60 KAKEAEDKYI ASVHSKRHIK LMKEISSTIY DASRNKIARK FNSIYLNKGS SESAVLAAGS 120 VIEVAEKVAA GELSSAIALV RPPGHHAEHD EAMGFCLFNN VAVAANYLLN ERPDLGIKKI 180 LIVDWDVHHG NGTQKMFYDD PRVLFFSVHR FDYGSFYPSE GDASHCFIGE EAGKGYNINV 240 PWEHGKCGDA DYIAAWDHVL LPVTKVFDPD IILVSAGFDA ALGDPLGGCC ITPNGYALLL 300 TKLLGFAQGR IVMALEGGYN LRSIANSVCA CAKVLLGDKF TFNTPEMQPF ESTWRVIQAV 360 RNELKTCWPV LSSKLPENVS LRIKPAPSEL YASDSESDSE DVDELLGTVA SVSVIEATGV 420 AISEHLSKMK LDDDSLAVKT NSSCSAAEQH PVDSVKVHNN ASVVLTKKIS DLSLEWRSDL 480 SKTDVWYASF GSNMWRPRFL CYIQGGKAEG MNIPCCGSRD TSSPKGTVWK TVPHRLLFGR 540 SSTPCWGTGG VAFLNPEINY NEKSYVCMYK ITLEQFNDIL FQENRLVLED GKDGNTVYPD 600 SPLIGSSEIK FISTNRAVHL EPIKDSWYSN VLYLGNEDEV PILTMTCPAS DIERYKSGEL 660 RLAPPSETYA ATLIKGLVEG KQMDADGAAS YINAAAARAL Protein Fasta Sequence
>GRMZM2G457889_P01|Class-I|Zea mays MAEPAPAPPVTAPLVGLLYDERMCAHATPNGEEHPENPERLRSIWRKLNAAGVASRCVALKAKEAEDKYIASVHSKRHIKLMKEISSTIYDASRNKIARKFNSIYLNKGSSESAVLAAGSVIEVAEKVAAGELSSAIALVRPPGHHAEHDEAMGFCLFNNVAVAANYLLNERPDLGIKKILIVDWDVHHGNGTQKMFYDDPRVLFFSVHRFDYGSFYPSEGDASHCFIGEEAGKGYNINVPWEHGKCGDADYIAAWDHVLLPVTKVFDPDIILVSAGFDAALGDPLGGCCITPNGYALLLTKLLGFAQGRIVMALEGGYNLRSIANSVCACAKVLLGDKFTFNTPEMQPFESTWRVIQAVRNELKTCWPVLSSKLPENVSLRIKPAPSELYASDSESDSEDVDELLGTVASVSVIEATGVAISEHLSKMKLDDDSLAVKTNSSCSAAEQHPVDSVKVHNNASVVLTKKISDLSLEWRSDLSKTDVWYASFGSNMWRPRFLCYIQGGKAEGMNIPCCGSRDTSSPKGTVWKTVPHRLLFGRSSTPCWGTGGVAFLNPEINYNEKSYVCMYKITLEQFNDILFQENRLVLEDGKDGNTVYPDSPLIGSSEIKFISTNRAVHLEPIKDSWYSNVLYLGNEDEVPILTMTCPASDIERYKSGELRLAPPSETYAATLIKGLVEGKQMDADGAASYINAAAARAL
|
Nucleotide Sequence (Fasta) | CAAGCCCTCC AACTGAGTCG TCGGAGCGGA CGTCGAGTCG TCGATACGCC TGAACCCCAG 60 CTTTCCACTC GCCTCGCTCG CCCCTTTCGC GTCCACCGAC CCCGACCCCG ACCCCGATCC 120 CCGCCGGTGC TTCGCCACCC CGATCCCCAC CGCGCGATGG CGGAGCCGGC TCCGGCTCCC 180 CCGGTGACCG CGCCGCTGGT GGGGCTGCTG TACGACGAGC GGATGTGCGC GCACGCGACG 240 CCCAACGGGG AGGAACACCC GGAGAACCCC GAGCGGCTGC GCTCCATCTG GCGCAAGCTC 300 AACGCCGCGG GCGTCGCGTC CAGGTGTGTG GCCCTTAAGG CAAAGGAAGC TGAGGACAAG 360 TATATAGCTT CTGTTCACAG CAAGAGGCAT ATAAAGCTGA TGAAGGAAAT TAGCTCAACA 420 ATATATGATG CCAGCAGGAA CAAGATTGCT AGGAAATTCA ATTCCATTTA CTTGAATAAG 480 GGTTCCTCGG AATCTGCTGT TCTTGCAGCT GGTTCTGTCA TAGAGGTAGC TGAGAAAGTT 540 GCTGCAGGTG AGTTAAGTTC TGCTATTGCT CTAGTCAGAC CTCCAGGCCA CCATGCAGAA 600 CATGATGAGG CTATGGGATT TTGCCTCTTC AACAATGTGG CAGTTGCAGC TAATTATCTC 660 TTAAACGAGA GGCCTGATTT AGGTATCAAG AAGATATTGA TTGTCGATTG GGATGTTCAC 720 CATGGAAATG GCACACAGAA AATGTTTTAC GATGATCCTC GTGTATTGTT CTTCTCAGTT 780 CACAGATTTG ATTATGGAAG CTTCTATCCT TCTGAAGGGG ATGCTTCTCA TTGTTTCATC 840 GGGGAAGAAG CTGGTAAAGG GTATAACATC AATGTTCCCT GGGAGCATGG CAAGTGTGGT 900 GATGCTGATT ATATTGCTGC ATGGGACCAT GTACTGCTTC CTGTCACTAA AGTTTTTGAT 960 CCTGATATAA TTCTGGTATC AGCGGGGTTT GATGCAGCAT TGGGTGATCC TCTCGGTGGG 1020 TGCTGCATTA CACCAAATGG ATATGCACTG CTACTAACAA AGTTGTTAGG ATTTGCTCAA 1080 GGAAGGATAG TGATGGCCCT TGAAGGAGGT TATAACCTTA GGTCCATAGC GAACTCAGTT 1140 TGTGCTTGTG CAAAAGTTCT CTTGGGAGAC AAATTCACAT TCAACACTCC AGAGATGCAA 1200 CCATTTGAAT CTACATGGAG AGTAATACAA GCGGTACGCA ATGAATTGAA GACATGCTGG 1260 CCTGTTCTGA GTAGCAAGTT GCCAGAAAAT GTATCATTGA GGATTAAGCC TGCACCAAGC 1320 GAGCTCTACG CTTCTGATTC TGAATCTGAT AGTGAAGATG TTGATGAGCT CCTTGGCACT 1380 GTTGCATCTG TCAGTGTTAT TGAAGCTACT GGTGTTGCTA TAAGTGAACA CCTCTCAAAG 1440 ATGAAACTTG ATGATGACAG CCTTGCAGTG AAGACTAACT CAAGTTGCTC AGCAGCAGAA 1500 CAGCATCCAG TTGATTCAGT AAAAGTACAT AACAATGCAT CTGTTGTGCT GACCAAAAAA 1560 ATATCTGATT TATCTCTTGA GTGGCGATCA GATTTATCGA AAACTGATGT CTGGTATGCC 1620 AGTTTTGGAT CAAACATGTG GAGACCAAGA TTTCTATGTT ATATTCAAGG AGGGAAGGCT 1680 GAGGGTATGA ATATACCATG CTGCGGATCA CGTGACACAA GCTCACCAAA AGGAACCGTG 1740 TGGAAGACTG TACCTCACAG GTTGCTTTTC GGTAGATCGT CTACCCCTTG TTGGGGAACT 1800 GGTGGTGTGG CTTTTCTCAA CCCTGAGATA AACTACAATG AGAAGTCGTA TGTCTGCATG 1860 TACAAAATAA CGTTGGAGCA GTTCAATGAC ATCTTGTTTC AGGAGAATCG TTTAGTGCTG 1920 GAGGATGGCA AAGACGGAAA CACTGTGTAT CCTGACTCTC CTTTGATTGG TTCATCTGAA 1980 ATCAAGTTTA TATCTACAAA CAGAGCTGTT CATCTTGAAC CTATTAAGGA TAGCTGGTAC 2040 TCCAATGTAC TTTATCTTGG GAATGAGGAT GAAGTTCCAA TTCTAACTAT GACGTGCCCC 2100 GCATCAGATA TTGAGAGGTA TAAATCTGGT GAGCTGCGTT TAGCACCTCC ATCAGAGACG 2160 TATGCGGCCA CTCTGATAAA GGGACTAGTG GAAGGCAAGC AAATGGATGC GGACGGAGCT 2220 GCCAGCTACA TCAACGCTGC TGCTGCAAGA GCCTTGTGAA GGCGGCTTCA GCGTGTGCTT 2280 TTGTACAGCC AGTAAGGAGT AGCAAGGATA CACTATCTGT TAGCGTGGCG ACACCAGGAA 2340 ACCTTCATTG TCCGCAAATG GAGAACTTGG ATCCAATTTG AATTGGGAAG CATGATTCGA 2400 GCTTGCCCTA GCTTGATTAC TGGTGAACGG TGATCTCCCC TGGCTGGTTG ATTCTGGGAG 2460 AAACACTAGC TGTGTCGGGG TGGAGCAACA CTAGTTGGCG GTTGCAACAG GTGCTCTCAC 2520 TGCACTGGTA TCGTGCTTGT CTGACATACC GTAGTATTTG CATGGCATGC TGGTGATGGT 2580 ATTTGTGCAA TTACTGCATT ATGTTCTGT
Nucleotide Fasta Sequence
>GRMZM2G457889_P01|Class-I|Zea mays CAAGCCCTCCAACTGAGTCGTCGGAGCGGACGTCGAGTCGTCGATACGCCTGAACCCCAGCTTTCCACTCGCCTCGCTCGCCCCTTTCGCGTCCACCGACCCCGACCCCGACCCCGATCCCCGCCGGTGCTTCGCCACCCCGATCCCCACCGCGCGATGGCGGAGCCGGCTCCGGCTCCCCCGGTGACCGCGCCGCTGGTGGGGCTGCTGTACGACGAGCGGATGTGCGCGCACGCGACGCCCAACGGGGAGGAACACCCGGAGAACCCCGAGCGGCTGCGCTCCATCTGGCGCAAGCTCAACGCCGCGGGCGTCGCGTCCAGGTGTGTGGCCCTTAAGGCAAAGGAAGCTGAGGACAAGTATATAGCTTCTGTTCACAGCAAGAGGCATATAAAGCTGATGAAGGAAATTAGCTCAACAATATATGATGCCAGCAGGAACAAGATTGCTAGGAAATTCAATTCCATTTACTTGAATAAGGGTTCCTCGGAATCTGCTGTTCTTGCAGCTGGTTCTGTCATAGAGGTAGCTGAGAAAGTTGCTGCAGGTGAGTTAAGTTCTGCTATTGCTCTAGTCAGACCTCCAGGCCACCATGCAGAACATGATGAGGCTATGGGATTTTGCCTCTTCAACAATGTGGCAGTTGCAGCTAATTATCTCTTAAACGAGAGGCCTGATTTAGGTATCAAGAAGATATTGATTGTCGATTGGGATGTTCACCATGGAAATGGCACACAGAAAATGTTTTACGATGATCCTCGTGTATTGTTCTTCTCAGTTCACAGATTTGATTATGGAAGCTTCTATCCTTCTGAAGGGGATGCTTCTCATTGTTTCATCGGGGAAGAAGCTGGTAAAGGGTATAACATCAATGTTCCCTGGGAGCATGGCAAGTGTGGTGATGCTGATTATATTGCTGCATGGGACCATGTACTGCTTCCTGTCACTAAAGTTTTTGATCCTGATATAATTCTGGTATCAGCGGGGTTTGATGCAGCATTGGGTGATCCTCTCGGTGGGTGCTGCATTACACCAAATGGATATGCACTGCTACTAACAAAGTTGTTAGGATTTGCTCAAGGAAGGATAGTGATGGCCCTTGAAGGAGGTTATAACCTTAGGTCCATAGCGAACTCAGTTTGTGCTTGTGCAAAAGTTCTCTTGGGAGACAAATTCACATTCAACACTCCAGAGATGCAACCATTTGAATCTACATGGAGAGTAATACAAGCGGTACGCAATGAATTGAAGACATGCTGGCCTGTTCTGAGTAGCAAGTTGCCAGAAAATGTATCATTGAGGATTAAGCCTGCACCAAGCGAGCTCTACGCTTCTGATTCTGAATCTGATAGTGAAGATGTTGATGAGCTCCTTGGCACTGTTGCATCTGTCAGTGTTATTGAAGCTACTGGTGTTGCTATAAGTGAACACCTCTCAAAGATGAAACTTGATGATGACAGCCTTGCAGTGAAGACTAACTCAAGTTGCTCAGCAGCAGAACAGCATCCAGTTGATTCAGTAAAAGTACATAACAATGCATCTGTTGTGCTGACCAAAAAAATATCTGATTTATCTCTTGAGTGGCGATCAGATTTATCGAAAACTGATGTCTGGTATGCCAGTTTTGGATCAAACATGTGGAGACCAAGATTTCTATGTTATATTCAAGGAGGGAAGGCTGAGGGTATGAATATACCATGCTGCGGATCACGTGACACAAGCTCACCAAAAGGAACCGTGTGGAAGACTGTACCTCACAGGTTGCTTTTCGGTAGATCGTCTACCCCTTGTTGGGGAACTGGTGGTGTGGCTTTTCTCAACCCTGAGATAAACTACAATGAGAAGTCGTATGTCTGCATGTACAAAATAACGTTGGAGCAGTTCAATGACATCTTGTTTCAGGAGAATCGTTTAGTGCTGGAGGATGGCAAAGACGGAAACACTGTGTATCCTGACTCTCCTTTGATTGGTTCATCTGAAATCAAGTTTATATCTACAAACAGAGCTGTTCATCTTGAACCTATTAAGGATAGCTGGTACTCCAATGTACTTTATCTTGGGAATGAGGATGAAGTTCCAATTCTAACTATGACGTGCCCCGCATCAGATATTGAGAGGTATAAATCTGGTGAGCTGCGTTTAGCACCTCCATCAGAGACGTATGCGGCCACTCTGATAAAGGGACTAGTGGAAGGCAAGCAAATGGATGCGGACGGAGCTGCCAGCTACATCAACGCTGCTGCTGCAAGAGCCTTGTGAAGGCGGCTTCAGCGTGTGCTTTTGTACAGCCAGTAAGGAGTAGCAAGGATACACTATCTGTTAGCGTGGCGACACCAGGAAACCTTCATTGTCCGCAAATGGAGAACTTGGATCCAATTTGAATTGGGAAGCATGATTCGAGCTTGCCCTAGCTTGATTACTGGTGAACGGTGATCTCCCCTGGCTGGTTGATTCTGGGAGAAACACTAGCTGTGTCGGGGTGGAGCAACACTAGTTGGCGGTTGCAACAGGTGCTCTCACTGCACTGGTATCGTGCTTGTCTGACATACCGTAGTATTTGCATGGCATGCTGGTGATGGTATTTGTGCAATTACTGCATTATGTTCTGT
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |