Tag |
Content |
WERAM ID |
WERAM-Sob-0036 |
Ensembl Protein ID |
Sb02g038550.1 |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
8.10e-124 |
413.8 |
17 |
339 |
HDAC |
Class-I |
1.60e-38 |
133.8 |
30 |
336 |
|
Organism |
Sorghum bicolor |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsiyles 96 +gl+yd++m +h+++ +++ hpE+peR++ai+++l+++g++++++ lka++a+++ +++vHs++h++l+++ + k+ + ++++ +++siy+++ Sb02g038550.1 17 VGLLYDDRMRAHATPDGEE--HPENPERLRAIWRKLNAEGVAPRCVALKAKEAEDKYIASVHSKSHIKLMKEISsKKYDATRNKIARKFNSIYFNK 110 6899***********9999..***************************************************998888899999************ PP class-2.txt 97 ksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeifykdpkvl 189 s+++a la+G+v+e+++kv++gel+ ++a+vRPPGHHae+++amGFClfnnvavaa++l+++ + +kkilivDwDvHhGnGtq++fy+dp+vl Sb02g038550.1 111 GSSESAVLAAGSVIEVAEKVAAGELSSAIALVRPPGHHAEHDEAMGFCLFNNVAVAANYLLNERPdlgIKKILIVDWDVHHGNGTQKMFYNDPRVL 206 *************************************************************9987788**************************** PP class-2.txt 190 ylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatlt 285 ++S+HR+d gsf+p+ g+++ +ge+ g+g+n+Nv+w++g++gda+y+aa+++v+lp++k F+Pd++lvsaGfDaa gdplgg+++t+++ya l Sb02g038550.1 207 FFSVHRFDYGSFYPAEGDASHCFIGEEGGKGYNINVPWEHGKCGDADYIAAWDHVLLPVTKVFDPDIILVSAGFDAALGDPLGGCCITPNGYALLL 302 **************99999999************************************************************************** PP class-2.txt 286 kqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 +ll++a+gr+v++lEGGynl++ia++v a++k+Llg Sb02g038550.1 303 TKLLGFAQGRIVMALEGGYNLRSIANSVCACAKVLLG 339 ***********************************96 PP
HDAC Class-I
class-1.txt 16 y..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeels.kelkkfnvgedcPvfdglfeycqlitGa 108 + g++hp p+rl+ + + + g+ + +k+k+a+ ++++++hs+ +i+++k++++++ + + k +kfn +g e + l +G+ Sb02g038550.1 30 TpdGEEHPENPERLRAIWRKLNAEGVAPRCVALKAKEAEDKYIASVHSKSHIKLMKEISSKKYDATRnKIARKFNS---IYFNKGSSESAVLAAGS 122 333899***********9999999************************************9999776255678874...34567889999999*** PP class-1.txt 109 sleaakkLnkkeadiainwa.GGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.ef 197 +e a+k+ +e ai hha ++ea Gfc n++ +a ll + k++l +d d+hhG+g ++ fy+ rv+ s+h+++ +f Sb02g038550.1 123 VIEVAEKVAAGELSSAIALVrPPGHHAEHDEAMGFCLFNNVAVAANYLLNErpdlgIKKILIVDWDVHHGNGTQKMFYNDPRVLFFSVHRFDYgSF 218 **********99888887641456*********************9999852333368********************************98525* PP class-1.txt 198 fPgtGdlsd..vgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpll 289 +P+ Gd s +g+e gk y +nvP ++g + D y + +v+ +v+++f+P+++++ G D+ gD+lg ++ +g+a + + f + ++ Sb02g038550.1 219 YPAEGDASHcfIGEEGGKGYNINVPWEHGkCGDADYIAAWDHVLLPVTKVFDPDIILVSAGFDAALGDPLGGCCITPNGYALLLTKLLGFaQGRIV 314 *******985569999************9899**************************************************99999999677888 PP class-1.txt 290 vlGGGGYtlrnvaRcwtyetav 311 + GGY+lr +a + v Sb02g038550.1 315 MALEGGYNLRSIANSVCACAKV 336 8889********9988776666 PP
|
Protein Sequence (Fasta) | MSAPAPAPAP PMAAPRVGLL YDDRMRAHAT PDGEEHPENP ERLRAIWRKL NAEGVAPRCV 60 ALKAKEAEDK YIASVHSKSH IKLMKEISSK KYDATRNKIA RKFNSIYFNK GSSESAVLAA 120 GSVIEVAEKV AAGELSSAIA LVRPPGHHAE HDEAMGFCLF NNVAVAANYL LNERPDLGIK 180 KILIVDWDVH HGNGTQKMFY NDPRVLFFSV HRFDYGSFYP AEGDASHCFI GEEGGKGYNI 240 NVPWEHGKCG DADYIAAWDH VLLPVTKVFD PDIILVSAGF DAALGDPLGG CCITPNGYAL 300 LLTKLLGFAQ GRIVMALEGG YNLRSIANSV CACAKVLLGD KFTFNAPEMQ PFESTWSVIQ 360 AVRNELKTCW PVLSSKLPEN VSLRIRPSPS EVNASSDSES DSEDVAELLP TVASVNVIEV 420 AGDAISEHLS KMKLDDDNLS VKTTSSCSAA EQHLVDSVKV QNNASVVLTK KISDLSLAWR 480 SDLSRTDVWY ASFGSNMWRP RFLCYVQGGK AEGMSIACYG SRDTSSPKGT MWKTVPHRLL 540 FGRSSTPCWG TGGVAFLNPE INYNEKSYVC MYKITLEQFN DILFQENRLV LKDGKDGNVV 600 YPDSPLIGSS EIKFISTNKA IHLEPIKDSW YSNVLYLGNE GELPILTMTC PASDIERFKS 660 GELPLAPPSE TYAATLIRGL VEGKQLDADG AANYINACAA KGL 703Protein Fasta Sequence
>Sb02g038550.1|Class-I|Sorghum bicolor MSAPAPAPAPPMAAPRVGLLYDDRMRAHATPDGEEHPENPERLRAIWRKLNAEGVAPRCVALKAKEAEDKYIASVHSKSHIKLMKEISSKKYDATRNKIARKFNSIYFNKGSSESAVLAAGSVIEVAEKVAAGELSSAIALVRPPGHHAEHDEAMGFCLFNNVAVAANYLLNERPDLGIKKILIVDWDVHHGNGTQKMFYNDPRVLFFSVHRFDYGSFYPAEGDASHCFIGEEGGKGYNINVPWEHGKCGDADYIAAWDHVLLPVTKVFDPDIILVSAGFDAALGDPLGGCCITPNGYALLLTKLLGFAQGRIVMALEGGYNLRSIANSVCACAKVLLGDKFTFNAPEMQPFESTWSVIQAVRNELKTCWPVLSSKLPENVSLRIRPSPSEVNASSDSESDSEDVAELLPTVASVNVIEVAGDAISEHLSKMKLDDDNLSVKTTSSCSAAEQHLVDSVKVQNNASVVLTKKISDLSLAWRSDLSRTDVWYASFGSNMWRPRFLCYVQGGKAEGMSIACYGSRDTSSPKGTMWKTVPHRLLFGRSSTPCWGTGGVAFLNPEINYNEKSYVCMYKITLEQFNDILFQENRLVLKDGKDGNVVYPDSPLIGSSEIKFISTNKAIHLEPIKDSWYSNVLYLGNEGELPILTMTCPASDIERFKSGELPLAPPSETYAATLIRGLVEGKQLDADGAANYINACAAKGL
|
Nucleotide Sequence (Fasta) | GCCTGAACCC CCCCGAACTC CCCACTCGCC TAGTCGCCTG CTCGCCCCTC GCGTCCTCCG 60 CTCCGGTGCT GCGTCTCCAC GCCGCGCGAT GTCGGCGCCG GCGCCGGCTC CGGCTCCCCC 120 AATGGCCGCG CCGCGGGTGG GGTTGCTGTA CGACGATCGG ATGCGCGCGC ACGCGACGCC 180 TGACGGGGAG GAACACCCGG AGAACCCCGA GCGGCTGCGC GCCATCTGGC GCAAGCTCAA 240 CGCCGAGGGC GTCGCGCCCA GGTGTGTGGC CCTTAAGGCG AAGGAAGCCG AGGACAAATA 300 TATAGCTTCT GTTCACAGCA AGAGCCATAT AAAGCTGATG AAGGAGATTA GCTCAAAGAA 360 GTATGATGCC ACCAGGAACA AGATTGCTAG GAAATTCAAT TCCATTTACT TCAACAAGGG 420 TTCCTCGGAA TCTGCTGTTC TTGCAGCTGG TTCTGTCATA GAGGTAGCTG AGAAAGTTGC 480 TGCAGGTGAG TTAAGTTCTG CTATTGCTCT AGTCAGACCT CCAGGCCACC ATGCAGAACA 540 TGATGAGGCA ATGGGATTTT GCCTCTTCAA CAATGTGGCA GTTGCAGCTA ATTATCTCTT 600 AAACGAGAGG CCTGATTTAG GTATCAAGAA GATATTGATT GTCGATTGGG ATGTTCACCA 660 TGGAAATGGC ACGCAGAAAA TGTTCTACAA TGATCCTCGT GTATTGTTCT TCTCAGTTCA 720 CAGATTTGAT TATGGAAGCT TCTATCCTGC TGAAGGGGAT GCTTCTCATT GTTTCATCGG 780 GGAAGAAGGT GGTAAAGGGT ATAACATCAA TGTTCCCTGG GAGCATGGGA AGTGTGGGGA 840 TGCTGATTAT ATTGCTGCAT GGGACCATGT ACTGCTTCCT GTCACTAAAG TTTTTGATCC 900 TGATATAATA CTGGTATCGG CTGGGTTTGA TGCAGCATTG GGTGATCCTC TCGGTGGGTG 960 CTGCATTACA CCAAATGGAT ATGCACTGCT ACTAACAAAG TTGTTAGGAT TTGCTCAAGG 1020 AAGGATAGTG ATGGCCCTTG AAGGAGGTTA TAACCTTAGG TCCATAGCAA ATTCAGTTTG 1080 TGCTTGTGCA AAAGTTCTCT TGGGAGACAA ATTCACATTC AACGCTCCAG AGATGCAGCC 1140 ATTTGAATCT ACATGGAGTG TTATACAAGC GGTACGTAAT GAATTGAAGA CATGCTGGCC 1200 TGTTCTGAGT AGCAAGCTGC CAGAAAATGT ATCATTGAGG ATTAGGCCTT CACCAAGCGA 1260 GGTCAACGCT TCCTCTGATT CCGAATCTGA TAGTGAAGAT GTTGCTGAGC TCCTTCCCAC 1320 TGTTGCATCT GTCAATGTTA TTGAAGTTGC TGGTGATGCT ATAAGTGAAC ACCTCTCAAA 1380 GATGAAACTT GATGATGACA ACCTTTCAGT GAAGACTACC TCAAGTTGCT CAGCAGCAGA 1440 ACAGCATCTA GTTGATTCAG TAAAAGTACA AAACAATGCA TCTGTGGTGC TGACCAAAAA 1500 AATATCTGAT TTATCTCTCG CTTGGCGATC AGATTTATCA AGAACTGATG TCTGGTATGC 1560 CAGTTTTGGT TCAAACATGT GGAGACCAAG ATTTCTATGC TATGTTCAAG GAGGGAAGGC 1620 TGAGGGTATG AGTATAGCGT GCTACGGATC ACGTGATACA AGCTCACCAA AAGGAACCAT 1680 GTGGAAGACT GTACCTCACA GGTTGCTTTT TGGTAGATCG TCTACCCCTT GTTGGGGAAC 1740 TGGTGGTGTT GCTTTTCTCA ACCCTGAGAT AAACTACAAT GAGAAGTCGT ATGTCTGCAT 1800 GTACAAAATA ACGTTGGAGC AGTTCAATGA CATCTTGTTT CAGGAGAATC GTTTAGTGCT 1860 GAAGGATGGC AAAGACGGGA ACGTTGTGTA TCCTGACTCT CCTTTGATTG GTTCATCTGA 1920 AATCAAGTTT ATATCTACAA ACAAAGCTAT TCATCTTGAA CCTATTAAGG ATAGCTGGTA 1980 CTCCAATGTA CTTTATCTTG GGAATGAGGG TGAACTTCCA ATTCTAACTA TGACGTGCCC 2040 CGCATCAGAT ATTGAGAGGT TCAAATCTGG TGAGCTGCCT TTAGCACCTC CATCAGAGAC 2100 ATATGCGGCC ACTCTGATAA GGGGACTAGT TGAAGGAAAG CAACTGGATG CGGACGGAGC 2160 TGCCAACTAC ATCAATGCTT GTGCTGCAAA AGGCCTGTGA AGCCTGCTTC AGCGTGTGCT 2220 TTGTACAGCC AGTAGGTAGT AGTAAGGATA CACTATTCGC TAGCGTGAGG ACCGGGAGTG 2280 TTGGACAAGC TTCGTTCTTT GCGAGTGGAG AACTTGGATC CAATTTGAAT TGGGCAGGAT 2340 GATTCGATCT TGCCCGCTTG GTCATTGGTG AATGGTGGGT CTCCCCTGTT AGGTTGATTC 2400 TGGGAGAAAC ACTAGCTATG TCGGGGTGGA GCAACACTAG TTGCAGATTG CAGCAGGTGC 2460 TCTCACTGCA CTAGCATCGT TCTTGTCTGA CATACCGTAG TATTTGGATG GCATGCCGGT 2520 GGTGTTATTT TGTATTGTTA CT
2543Nucleotide Fasta Sequence
>Sb02g038550.1|Class-I|Sorghum bicolor GCCTGAACCCCCCCGAACTCCCCACTCGCCTAGTCGCCTGCTCGCCCCTCGCGTCCTCCGCTCCGGTGCTGCGTCTCCACGCCGCGCGATGTCGGCGCCGGCGCCGGCTCCGGCTCCCCCAATGGCCGCGCCGCGGGTGGGGTTGCTGTACGACGATCGGATGCGCGCGCACGCGACGCCTGACGGGGAGGAACACCCGGAGAACCCCGAGCGGCTGCGCGCCATCTGGCGCAAGCTCAACGCCGAGGGCGTCGCGCCCAGGTGTGTGGCCCTTAAGGCGAAGGAAGCCGAGGACAAATATATAGCTTCTGTTCACAGCAAGAGCCATATAAAGCTGATGAAGGAGATTAGCTCAAAGAAGTATGATGCCACCAGGAACAAGATTGCTAGGAAATTCAATTCCATTTACTTCAACAAGGGTTCCTCGGAATCTGCTGTTCTTGCAGCTGGTTCTGTCATAGAGGTAGCTGAGAAAGTTGCTGCAGGTGAGTTAAGTTCTGCTATTGCTCTAGTCAGACCTCCAGGCCACCATGCAGAACATGATGAGGCAATGGGATTTTGCCTCTTCAACAATGTGGCAGTTGCAGCTAATTATCTCTTAAACGAGAGGCCTGATTTAGGTATCAAGAAGATATTGATTGTCGATTGGGATGTTCACCATGGAAATGGCACGCAGAAAATGTTCTACAATGATCCTCGTGTATTGTTCTTCTCAGTTCACAGATTTGATTATGGAAGCTTCTATCCTGCTGAAGGGGATGCTTCTCATTGTTTCATCGGGGAAGAAGGTGGTAAAGGGTATAACATCAATGTTCCCTGGGAGCATGGGAAGTGTGGGGATGCTGATTATATTGCTGCATGGGACCATGTACTGCTTCCTGTCACTAAAGTTTTTGATCCTGATATAATACTGGTATCGGCTGGGTTTGATGCAGCATTGGGTGATCCTCTCGGTGGGTGCTGCATTACACCAAATGGATATGCACTGCTACTAACAAAGTTGTTAGGATTTGCTCAAGGAAGGATAGTGATGGCCCTTGAAGGAGGTTATAACCTTAGGTCCATAGCAAATTCAGTTTGTGCTTGTGCAAAAGTTCTCTTGGGAGACAAATTCACATTCAACGCTCCAGAGATGCAGCCATTTGAATCTACATGGAGTGTTATACAAGCGGTACGTAATGAATTGAAGACATGCTGGCCTGTTCTGAGTAGCAAGCTGCCAGAAAATGTATCATTGAGGATTAGGCCTTCACCAAGCGAGGTCAACGCTTCCTCTGATTCCGAATCTGATAGTGAAGATGTTGCTGAGCTCCTTCCCACTGTTGCATCTGTCAATGTTATTGAAGTTGCTGGTGATGCTATAAGTGAACACCTCTCAAAGATGAAACTTGATGATGACAACCTTTCAGTGAAGACTACCTCAAGTTGCTCAGCAGCAGAACAGCATCTAGTTGATTCAGTAAAAGTACAAAACAATGCATCTGTGGTGCTGACCAAAAAAATATCTGATTTATCTCTCGCTTGGCGATCAGATTTATCAAGAACTGATGTCTGGTATGCCAGTTTTGGTTCAAACATGTGGAGACCAAGATTTCTATGCTATGTTCAAGGAGGGAAGGCTGAGGGTATGAGTATAGCGTGCTACGGATCACGTGATACAAGCTCACCAAAAGGAACCATGTGGAAGACTGTACCTCACAGGTTGCTTTTTGGTAGATCGTCTACCCCTTGTTGGGGAACTGGTGGTGTTGCTTTTCTCAACCCTGAGATAAACTACAATGAGAAGTCGTATGTCTGCATGTACAAAATAACGTTGGAGCAGTTCAATGACATCTTGTTTCAGGAGAATCGTTTAGTGCTGAAGGATGGCAAAGACGGGAACGTTGTGTATCCTGACTCTCCTTTGATTGGTTCATCTGAAATCAAGTTTATATCTACAAACAAAGCTATTCATCTTGAACCTATTAAGGATAGCTGGTACTCCAATGTACTTTATCTTGGGAATGAGGGTGAACTTCCAATTCTAACTATGACGTGCCCCGCATCAGATATTGAGAGGTTCAAATCTGGTGAGCTGCCTTTAGCACCTCCATCAGAGACATATGCGGCCACTCTGATAAGGGGACTAGTTGAAGGAAAGCAACTGGATGCGGACGGAGCTGCCAACTACATCAATGCTTGTGCTGCAAAAGGCCTGTGAAGCCTGCTTCAGCGTGTGCTTTGTACAGCCAGTAGGTAGTAGTAAGGATACACTATTCGCTAGCGTGAGGACCGGGAGTGTTGGACAAGCTTCGTTCTTTGCGAGTGGAGAACTTGGATCCAATTTGAATTGGGCAGGATGATTCGATCTTGCCCGCTTGGTCATTGGTGAATGGTGGGTCTCCCCTGTTAGGTTGATTCTGGGAGAAACACTAGCTATGTCGGGGTGGAGCAACACTAGTTGCAGATTGCAGCAGGTGCTCTCACTGCACTAGCATCGTTCTTGTCTGACATACCGTAGTATTTGGATGGCATGCCGGTGGTGTTATTTTGTATTGTTACT
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |