Tag |
Content |
WERAM ID |
WERAM-Arl-0149 |
Ensembl Protein ID |
scaffold_802745.1 |
Gene Name |
HDA05 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
1.80e-132 |
442.1 |
27 |
349 |
HDAC |
Class-I |
1.20e-36 |
127.6 |
28 |
567 |
|
Organism |
Arabidopsis lyrata |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsi 92 +gl+yde+m+kh+++ +++ hpE+p+Ri+ i+++lq ag+ ++++ l ++ka++++lqlvH+++hv+l+++ + k+++ + ++++++ +si scaffold_802745.1 27 VGLIYDEAMCKHDTPDGED--HPECPDRIRVIWEKLQLAGVSQRCVLLGSSKAEDKHLQLVHTKDHVNLVKSIStKQKDYQRNRIASQLNSI 116 789**************99..***************************************************998889999999******** PP class-2.txt 93 ylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqei 181 yl++ s++aa la+G+v+++++kv++gel++g+a+vRPPGHHae+++amGFClfnn+avaa++l+++ + vkkilivDwDvHhGnGtq++ scaffold_802745.1 117 YLNRGSSEAAYLAAGSVVKVAEKVAEGELDCGYAIVRPPGHHAEADEAMGFCLFNNIAVAASYLLNQRPdlgVKKILIVDWDVHHGNGTQKM 208 ****************************************************************99987788******************** PP class-2.txt 182 fykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgg 273 f++dp+vl++S+HR++ gsf+p+ ++g+++ vgeg+gegfn+Nv+w++g +gda+ylaa++++++p+a+eF+Pd++l+saGfDaa gdplgg scaffold_802745.1 209 FWEDPRVLFFSVHRHEYGSFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDIILLSAGFDAAIGDPLGG 300 ******************************************************************************************** PP class-2.txt 274 lsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 ++vt+ +y+ + k+l+++a+g++v++lEGGynl++ia+++ a+v++Llg scaffold_802745.1 301 CRVTPYAYSVMLKKLMEFAHGKIVMALEGGYNLDSIAKSSLACVQVLLG 349 ***********************************************96 PP
HDAC Class-I
class-1.txt 4 ayaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcP 93 +yde + ++ + g++hp p r++++ e + g+s++ ++ ++ka+ ++l+ +h++++++++k++++++++ ++++ +++ scaffold_802745.1 28 GLIYDEAMCKHDTpdGEDHPECPDRIRVIWEKLQLAGVSQRCVLLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKD-YQRNRIASQLN-SIY 117 566777776665544899*************99999**********************************988766.44444444443.456 PP class-1.txt 94 vfdglfeycqlitGasleaakkLnkkeadi..ainwaGGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveea 178 + g e + l +G+ ++ a+k+ ++e d ai G hha +ea Gfc n+i +a ll + k++l +d d+hhG+g ++ scaffold_802745.1 118 LNRGSSEAAYLAAGSVVKVAEKVAEGELDCgyAIVRPPG-HHAEADEAMGFCLFNNIAVAASYLLNQrpdlgVKKILIVDWDVHHGNGTQKM 208 77889999999**************99887225555555.********************99999853333368****************** PP class-1.txt 179 fyttdrvmtvsfhkyge.effPg..tGdlsdvgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlge 266 f + rv+ s+h+++ +f+P+ Gd + vg++ g + +nvP ++g + D y + +++ +v + f+P++++l G D+ gD+lg scaffold_802745.1 209 FWEDPRVLFFSVHRHEYgSFYPAgdDGDYNMVGEGPGEGFNINVPWDQGrCGDADYLAAWDHILIPVAREFNPDIILLSAGFDAAIGDPLGG 300 ************9876414999733599999***************99979***************************************** PP class-1.txt 267 fnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRc 304 ++ +++ ++k + +f + ++++ GGY+l +a+ scaffold_802745.1 301 CRVTPYAYSVMLKKLMEFaHGKIVMALEGGYNLDSIAKS 339 ******************6667777889*****999975 PP class-1.txt 65 ieflkkvepenaeelskelkkfnvgedcPvfdg 97 +l +++ e+ +++ ++ + nv++d+Pvfd scaffold_802745.1 535 HMCLYRITLEQFNDVLSQENGLNVDSDSPVFDL 567 568999*************************85 PP
|
Protein Sequence (Fasta) | MAMAGESSGK KCGDGDGRVA GKSQRKVGLI YDEAMCKHDT PDGEDHPECP DRIRVIWEKL 60 QLAGVSQRCV LLGSSKAEDK HLQLVHTKDH VNLVKSISTK QKDYQRNRIA SQLNSIYLNR 120 GSSEAAYLAA GSVVKVAEKV AEGELDCGYA IVRPPGHHAE ADEAMGFCLF NNIAVAASYL 180 LNQRPDLGVK KILIVDWDVH HGNGTQKMFW EDPRVLFFSV HRHEYGSFYP AGDDGDYNMV 240 GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDIILLSAGF DAAIGDPLGG 300 CRVTPYAYSV MLKKLMEFAH GKIVMALEGG YNLDSIAKSS LACVQVLLGD KQIHGSSEAY 360 PFESTWRVIQ AVRKRLCAYW PSLADELSWK LINQKTPTPI ILISSSDSDN EDDAHGLLDQ 420 MSKLNIENHQ GTLLENHQVD TASTSWRADL ANVDVWYASF GSNMWKPRFL CYIQGGQVDG 480 MKKTCVGSMD KSPPKEIVWE TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR 540 ITLEQFNDVL SQENGLNVDS DSPVFDLASL QLVENKGSIL EAALNSWYGN VVCLGKEHDI 600 PILTMTCTLS AVEKFKSGEI PLRPPAKAYA NTLIRGLVEG GRFSKEEAEA YIDNAVSKPL 660 Protein Fasta Sequence
>scaffold_802745.1|Class-I|Arabidopsis lyrata MAMAGESSGKKCGDGDGRVAGKSQRKVGLIYDEAMCKHDTPDGEDHPECPDRIRVIWEKLQLAGVSQRCVLLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKDYQRNRIASQLNSIYLNRGSSEAAYLAAGSVVKVAEKVAEGELDCGYAIVRPPGHHAEADEAMGFCLFNNIAVAASYLLNQRPDLGVKKILIVDWDVHHGNGTQKMFWEDPRVLFFSVHRHEYGSFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDIILLSAGFDAAIGDPLGGCRVTPYAYSVMLKKLMEFAHGKIVMALEGGYNLDSIAKSSLACVQVLLGDKQIHGSSEAYPFESTWRVIQAVRKRLCAYWPSLADELSWKLINQKTPTPIILISSSDSDNEDDAHGLLDQMSKLNIENHQGTLLENHQVDTASTSWRADLANVDVWYASFGSNMWKPRFLCYIQGGQVDGMKKTCVGSMDKSPPKEIVWETFPHRLFFGRESSVGWGVGGVAFTNPLANLIDQTHMCLYRITLEQFNDVLSQENGLNVDSDSPVFDLASLQLVENKGSILEAALNSWYGNVVCLGKEHDIPILTMTCTLSAVEKFKSGEIPLRPPAKAYANTLIRGLVEGGRFSKEEAEAYIDNAVSKPL
|
Nucleotide Sequence (Fasta) | ACTTGTCTCA TCTCCCGGTT ATGGCTATGG CCGGAGAATC TTCCGGCAAA AAGTGTGGAG 60 ACGGCGACGG TAGAGTCGCC GGGAAAAGCC AGCGAAAGGT GGGTCTTATT TACGACGAGG 120 CGATGTGCAA ACACGACACA CCTGACGGCG AGGATCACCC TGAGTGTCCC GATCGCATCA 180 GAGTTATCTG GGAGAAGCTT CAGCTCGCCG GAGTTTCTCA AAGATGTGTG CTTCTTGGTA 240 GTAGCAAAGC GGAAGATAAG CACCTCCAAT TGGTTCACAC AAAGGACCAT GTTAATTTAG 300 TTAAGAGTAT TAGTACAAAA CAGAAAGATT ATCAGCGAAA CAGGATTGCT TCACAGTTGA 360 ATTCGATTTA TCTGAACAGA GGTTCATCTG AAGCAGCATA TCTTGCAGCT GGATCTGTTG 420 TAAAGGTGGC AGAGAAAGTT GCAGAAGGAG AGTTAGATTG TGGTTATGCT ATTGTCAGGC 480 CCCCAGGGCA CCATGCTGAG GCAGATGAAG CAATGGGGTT TTGTTTATTC AACAATATAG 540 CCGTCGCTGC TAGTTATTTA CTTAACCAAA GACCGGATCT AGGGGTCAAA AAAATTCTGA 600 TCGTTGATTG GGATGTCCAT CACGGAAATG GTACACAGAA GATGTTCTGG GAAGATCCTC 660 GTGTGCTATT TTTCTCTGTT CATAGGCATG AGTATGGGAG TTTCTATCCA GCGGGTGATG 720 ATGGAGATTA TAACATGGTT GGGGAAGGTC CAGGTGAAGG GTTTAACATA AATGTTCCAT 780 GGGATCAAGG ACGATGCGGA GATGCAGATT ATCTTGCTGC ATGGGACCAT ATCTTGATTC 840 CTGTGGCTAG GGAATTTAAC CCGGATATTA TTCTGCTTTC AGCTGGATTT GATGCAGCTA 900 TTGGTGATCC GCTCGGGGGT TGTCGTGTGA CCCCATATGC ATACTCAGTT ATGTTGAAGA 960 AGCTGATGGA GTTTGCACAT GGAAAGATTG TGATGGCGTT AGAGGGAGGG TACAATCTTG 1020 ACTCAATTGC AAAGTCATCA CTTGCATGTG TCCAAGTTTT GCTTGGAGAC AAACAAATTC 1080 ATGGTTCTTC TGAAGCATAC CCATTCGAGT CTACATGGCG TGTCATACAA GCGGTACGCA 1140 AGAGGCTATG CGCATATTGG CCTTCACTTG CAGATGAATT ATCGTGGAAG CTGATTAATC 1200 AGAAAACTCC TACTCCAATT ATCCTTATCT CAAGCTCCGA CTCTGATAAT GAAGACGACG 1260 CCCATGGACT CCTGGATCAA ATGTCGAAAC TCAACATAGA AAACCACCAA GGTACACTAC 1320 TTGAAAACCA CCAAGTAGAT ACTGCATCTA CATCTTGGAG AGCTGATCTC GCAAATGTTG 1380 ACGTTTGGTA TGCCTCTTTT GGATCCAACA TGTGGAAACC AAGGTTTCTT TGCTATATTC 1440 AAGGGGGACA GGTCGATGGA ATGAAAAAGA CATGTGTTGG CTCAATGGAT AAAAGTCCAC 1500 CAAAGGAAAT AGTGTGGGAA ACATTTCCAC ATAGATTGTT CTTTGGCCGT GAATCTTCAG 1560 TTGGTTGGGG TGTAGGAGGA GTTGCTTTCA CCAACCCCCT TGCTAATCTC ATTGATCAAA 1620 CTCACATGTG TTTGTACCGA ATCACGCTTG AGCAGTTCAA CGACGTTCTG TCTCAAGAAA 1680 ATGGCTTGAA TGTAGATTCA GATTCTCCGG TCTTTGATCT AGCTTCTTTG CAGTTAGTAG 1740 AGAACAAAGG ATCCATTTTA GAAGCTGCTT TGAATAGTTG GTATGGAAAT GTTGTCTGCT 1800 TGGGGAAAGA ACACGACATT CCTATCCTTA CAATGACTTG CACGCTTTCT GCTGTTGAGA 1860 AGTTCAAATC CGGTGAGATC CCTCTAAGAC CTCCTGCAAA AGCCTATGCC AACACTTTAA 1920 TAAGAGGACT TGTGGAAGGA GGAAGATTCT CTAAAGAAGA AGCTGAGGCT TACATAGACA 1980 ATGCTGTGTC TAAACCTCTC TAGTGTATTA TTTACTCAGA AAC
2024Nucleotide Fasta Sequence
>scaffold_802745.1|Class-I|Arabidopsis lyrata ACTTGTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGCAAAAAGTGTGGAGACGGCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGTCTTATTTACGACGAGGCGATGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGATCGCATCAGAGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGCTTCTTGGTAGTAGCAAAGCGGAAGATAAGCACCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGTTAAGAGTATTAGTACAAAACAGAAAGATTATCAGCGAAACAGGATTGCTTCACAGTTGAATTCGATTTATCTGAACAGAGGTTCATCTGAAGCAGCATATCTTGCAGCTGGATCTGTTGTAAAGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGTTATGCTATTGTCAGGCCCCCAGGGCACCATGCTGAGGCAGATGAAGCAATGGGGTTTTGTTTATTCAACAATATAGCCGTCGCTGCTAGTTATTTACTTAACCAAAGACCGGATCTAGGGGTCAAAAAAATTCTGATCGTTGATTGGGATGTCCATCACGGAAATGGTACACAGAAGATGTTCTGGGAAGATCCTCGTGTGCTATTTTTCTCTGTTCATAGGCATGAGTATGGGAGTTTCTATCCAGCGGGTGATGATGGAGATTATAACATGGTTGGGGAAGGTCCAGGTGAAGGGTTTAACATAAATGTTCCATGGGATCAAGGACGATGCGGAGATGCAGATTATCTTGCTGCATGGGACCATATCTTGATTCCTGTGGCTAGGGAATTTAACCCGGATATTATTCTGCTTTCAGCTGGATTTGATGCAGCTATTGGTGATCCGCTCGGGGGTTGTCGTGTGACCCCATATGCATACTCAGTTATGTTGAAGAAGCTGATGGAGTTTGCACATGGAAAGATTGTGATGGCGTTAGAGGGAGGGTACAATCTTGACTCAATTGCAAAGTCATCACTTGCATGTGTCCAAGTTTTGCTTGGAGACAAACAAATTCATGGTTCTTCTGAAGCATACCCATTCGAGTCTACATGGCGTGTCATACAAGCGGTACGCAAGAGGCTATGCGCATATTGGCCTTCACTTGCAGATGAATTATCGTGGAAGCTGATTAATCAGAAAACTCCTACTCCAATTATCCTTATCTCAAGCTCCGACTCTGATAATGAAGACGACGCCCATGGACTCCTGGATCAAATGTCGAAACTCAACATAGAAAACCACCAAGGTACACTACTTGAAAACCACCAAGTAGATACTGCATCTACATCTTGGAGAGCTGATCTCGCAAATGTTGACGTTTGGTATGCCTCTTTTGGATCCAACATGTGGAAACCAAGGTTTCTTTGCTATATTCAAGGGGGACAGGTCGATGGAATGAAAAAGACATGTGTTGGCTCAATGGATAAAAGTCCACCAAAGGAAATAGTGTGGGAAACATTTCCACATAGATTGTTCTTTGGCCGTGAATCTTCAGTTGGTTGGGGTGTAGGAGGAGTTGCTTTCACCAACCCCCTTGCTAATCTCATTGATCAAACTCACATGTGTTTGTACCGAATCACGCTTGAGCAGTTCAACGACGTTCTGTCTCAAGAAAATGGCTTGAATGTAGATTCAGATTCTCCGGTCTTTGATCTAGCTTCTTTGCAGTTAGTAGAGAACAAAGGATCCATTTTAGAAGCTGCTTTGAATAGTTGGTATGGAAATGTTGTCTGCTTGGGGAAAGAACACGACATTCCTATCCTTACAATGACTTGCACGCTTTCTGCTGTTGAGAAGTTCAAATCCGGTGAGATCCCTCTAAGACCTCCTGCAAAAGCCTATGCCAACACTTTAATAAGAGGACTTGTGGAAGGAGGAAGATTCTCTAAAGAAGAAGCTGAGGCTTACATAGACAATGCTGTGTCTAAACCTCTCTAGTGTATTATTTACTCAGAAAC
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |