WERAM Information


Tag Content
WERAM ID WERAM-Arl-0149
Ensembl Protein ID scaffold_802745.1
Gene Name HDA05
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
scaffold_802745.1 scaffold_802745.1 scaffold_802745.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 1.80e-132 442.1 27 349
HDAC Class-I 1.20e-36 127.6 28 567
Organism Arabidopsis lyrata
Domain Profile
  HDAC Class-II

        class-2.txt   2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsi 92 
+gl+yde+m+kh+++ +++ hpE+p+Ri+ i+++lq ag+ ++++ l ++ka++++lqlvH+++hv+l+++ + k+++ + ++++++ +si
scaffold_802745.1 27 VGLIYDEAMCKHDTPDGED--HPECPDRIRVIWEKLQLAGVSQRCVLLGSSKAEDKHLQLVHTKDHVNLVKSIStKQKDYQRNRIASQLNSI 116
789**************99..***************************************************998889999999******** PP
class-2.txt 93 ylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqei 181
yl++ s++aa la+G+v+++++kv++gel++g+a+vRPPGHHae+++amGFClfnn+avaa++l+++ + vkkilivDwDvHhGnGtq++
scaffold_802745.1 117 YLNRGSSEAAYLAAGSVVKVAEKVAEGELDCGYAIVRPPGHHAEADEAMGFCLFNNIAVAASYLLNQRPdlgVKKILIVDWDVHHGNGTQKM 208
****************************************************************99987788******************** PP
class-2.txt 182 fykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgg 273
f++dp+vl++S+HR++ gsf+p+ ++g+++ vgeg+gegfn+Nv+w++g +gda+ylaa++++++p+a+eF+Pd++l+saGfDaa gdplgg
scaffold_802745.1 209 FWEDPRVLFFSVHRHEYGSFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDIILLSAGFDAAIGDPLGG 300
******************************************************************************************** PP
class-2.txt 274 lsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
++vt+ +y+ + k+l+++a+g++v++lEGGynl++ia+++ a+v++Llg
scaffold_802745.1 301 CRVTPYAYSVMLKKLMEFAHGKIVMALEGGYNLDSIAKSSLACVQVLLG 349
***********************************************96 PP

  HDAC Class-I

        class-1.txt   4 ayaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcP 93 
+yde + ++ + g++hp p r++++ e + g+s++ ++ ++ka+ ++l+ +h++++++++k++++++++ ++++ +++
scaffold_802745.1 28 GLIYDEAMCKHDTpdGEDHPECPDRIRVIWEKLQLAGVSQRCVLLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKD-YQRNRIASQLN-SIY 117
566777776665544899*************99999**********************************988766.44444444443.456 PP
class-1.txt 94 vfdglfeycqlitGasleaakkLnkkeadi..ainwaGGlhhakkseasGfcyvnDivlailellkk.....hkrvlyididlhhGDgveea 178
+ g e + l +G+ ++ a+k+ ++e d ai G hha +ea Gfc n+i +a ll + k++l +d d+hhG+g ++
scaffold_802745.1 118 LNRGSSEAAYLAAGSVVKVAEKVAEGELDCgyAIVRPPG-HHAEADEAMGFCLFNNIAVAASYLLNQrpdlgVKKILIVDWDVHHGNGTQKM 208
77889999999**************99887225555555.********************99999853333368****************** PP
class-1.txt 179 fyttdrvmtvsfhkyge.effPg..tGdlsdvgaekgkyyavnvPlkdg.idDesyekifksviskvieafePeavvlqcGaDslagDrlge 266
f + rv+ s+h+++ +f+P+ Gd + vg++ g + +nvP ++g + D y + +++ +v + f+P++++l G D+ gD+lg
scaffold_802745.1 209 FWEDPRVLFFSVHRHEYgSFYPAgdDGDYNMVGEGPGEGFNINVPWDQGrCGDADYLAAWDHILIPVAREFNPDIILLSAGFDAAIGDPLGG 300
************9876414999733599999***************99979***************************************** PP
class-1.txt 267 fnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRc 304
++ +++ ++k + +f + ++++ GGY+l +a+
scaffold_802745.1 301 CRVTPYAYSVMLKKLMEFaHGKIVMALEGGYNLDSIAKS 339
******************6667777889*****999975 PP
class-1.txt 65 ieflkkvepenaeelskelkkfnvgedcPvfdg 97
+l +++ e+ +++ ++ + nv++d+Pvfd
scaffold_802745.1 535 HMCLYRITLEQFNDVLSQENGLNVDSDSPVFDL 567
568999*************************85 PP

Protein Sequence
(Fasta)
MAMAGESSGK KCGDGDGRVA GKSQRKVGLI YDEAMCKHDT PDGEDHPECP DRIRVIWEKL 60
QLAGVSQRCV LLGSSKAEDK HLQLVHTKDH VNLVKSISTK QKDYQRNRIA SQLNSIYLNR 120
GSSEAAYLAA GSVVKVAEKV AEGELDCGYA IVRPPGHHAE ADEAMGFCLF NNIAVAASYL 180
LNQRPDLGVK KILIVDWDVH HGNGTQKMFW EDPRVLFFSV HRHEYGSFYP AGDDGDYNMV 240
GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDIILLSAGF DAAIGDPLGG 300
CRVTPYAYSV MLKKLMEFAH GKIVMALEGG YNLDSIAKSS LACVQVLLGD KQIHGSSEAY 360
PFESTWRVIQ AVRKRLCAYW PSLADELSWK LINQKTPTPI ILISSSDSDN EDDAHGLLDQ 420
MSKLNIENHQ GTLLENHQVD TASTSWRADL ANVDVWYASF GSNMWKPRFL CYIQGGQVDG 480
MKKTCVGSMD KSPPKEIVWE TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR 540
ITLEQFNDVL SQENGLNVDS DSPVFDLASL QLVENKGSIL EAALNSWYGN VVCLGKEHDI 600
PILTMTCTLS AVEKFKSGEI PLRPPAKAYA NTLIRGLVEG GRFSKEEAEA YIDNAVSKPL 660
Nucleotide Sequence
(Fasta)
ACTTGTCTCA TCTCCCGGTT ATGGCTATGG CCGGAGAATC TTCCGGCAAA AAGTGTGGAG 60
ACGGCGACGG TAGAGTCGCC GGGAAAAGCC AGCGAAAGGT GGGTCTTATT TACGACGAGG 120
CGATGTGCAA ACACGACACA CCTGACGGCG AGGATCACCC TGAGTGTCCC GATCGCATCA 180
GAGTTATCTG GGAGAAGCTT CAGCTCGCCG GAGTTTCTCA AAGATGTGTG CTTCTTGGTA 240
GTAGCAAAGC GGAAGATAAG CACCTCCAAT TGGTTCACAC AAAGGACCAT GTTAATTTAG 300
TTAAGAGTAT TAGTACAAAA CAGAAAGATT ATCAGCGAAA CAGGATTGCT TCACAGTTGA 360
ATTCGATTTA TCTGAACAGA GGTTCATCTG AAGCAGCATA TCTTGCAGCT GGATCTGTTG 420
TAAAGGTGGC AGAGAAAGTT GCAGAAGGAG AGTTAGATTG TGGTTATGCT ATTGTCAGGC 480
CCCCAGGGCA CCATGCTGAG GCAGATGAAG CAATGGGGTT TTGTTTATTC AACAATATAG 540
CCGTCGCTGC TAGTTATTTA CTTAACCAAA GACCGGATCT AGGGGTCAAA AAAATTCTGA 600
TCGTTGATTG GGATGTCCAT CACGGAAATG GTACACAGAA GATGTTCTGG GAAGATCCTC 660
GTGTGCTATT TTTCTCTGTT CATAGGCATG AGTATGGGAG TTTCTATCCA GCGGGTGATG 720
ATGGAGATTA TAACATGGTT GGGGAAGGTC CAGGTGAAGG GTTTAACATA AATGTTCCAT 780
GGGATCAAGG ACGATGCGGA GATGCAGATT ATCTTGCTGC ATGGGACCAT ATCTTGATTC 840
CTGTGGCTAG GGAATTTAAC CCGGATATTA TTCTGCTTTC AGCTGGATTT GATGCAGCTA 900
TTGGTGATCC GCTCGGGGGT TGTCGTGTGA CCCCATATGC ATACTCAGTT ATGTTGAAGA 960
AGCTGATGGA GTTTGCACAT GGAAAGATTG TGATGGCGTT AGAGGGAGGG TACAATCTTG 1020
ACTCAATTGC AAAGTCATCA CTTGCATGTG TCCAAGTTTT GCTTGGAGAC AAACAAATTC 1080
ATGGTTCTTC TGAAGCATAC CCATTCGAGT CTACATGGCG TGTCATACAA GCGGTACGCA 1140
AGAGGCTATG CGCATATTGG CCTTCACTTG CAGATGAATT ATCGTGGAAG CTGATTAATC 1200
AGAAAACTCC TACTCCAATT ATCCTTATCT CAAGCTCCGA CTCTGATAAT GAAGACGACG 1260
CCCATGGACT CCTGGATCAA ATGTCGAAAC TCAACATAGA AAACCACCAA GGTACACTAC 1320
TTGAAAACCA CCAAGTAGAT ACTGCATCTA CATCTTGGAG AGCTGATCTC GCAAATGTTG 1380
ACGTTTGGTA TGCCTCTTTT GGATCCAACA TGTGGAAACC AAGGTTTCTT TGCTATATTC 1440
AAGGGGGACA GGTCGATGGA ATGAAAAAGA CATGTGTTGG CTCAATGGAT AAAAGTCCAC 1500
CAAAGGAAAT AGTGTGGGAA ACATTTCCAC ATAGATTGTT CTTTGGCCGT GAATCTTCAG 1560
TTGGTTGGGG TGTAGGAGGA GTTGCTTTCA CCAACCCCCT TGCTAATCTC ATTGATCAAA 1620
CTCACATGTG TTTGTACCGA ATCACGCTTG AGCAGTTCAA CGACGTTCTG TCTCAAGAAA 1680
ATGGCTTGAA TGTAGATTCA GATTCTCCGG TCTTTGATCT AGCTTCTTTG CAGTTAGTAG 1740
AGAACAAAGG ATCCATTTTA GAAGCTGCTT TGAATAGTTG GTATGGAAAT GTTGTCTGCT 1800
TGGGGAAAGA ACACGACATT CCTATCCTTA CAATGACTTG CACGCTTTCT GCTGTTGAGA 1860
AGTTCAAATC CGGTGAGATC CCTCTAAGAC CTCCTGCAAA AGCCTATGCC AACACTTTAA 1920
TAAGAGGACT TGTGGAAGGA GGAAGATTCT CTAAAGAAGA AGCTGAGGCT TACATAGACA 1980
ATGCTGTGTC TAAACCTCTC TAGTGTATTA TTTACTCAGA AAC 2024
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Art-0146 AT5G61060.1 Arabidopsis thaliana 93 0.0 1248
WERAM-Bro-0134 Bo7g098310.1 Brassica oleracea 84 0.0 1118
WERAM-Brr-0068 Bra012984.1-P Brassica rapa 84 0.0 1117
WERAM-Pot-0045 POPTR_0004s09180.1 Populus trichocarpa 68 0.0 884
WERAM-Thc-0031 EOY22062 Theobroma cacao 66 0.0 875
WERAM-Viv-0107 VIT_17s0000g07280.t01 Vitis vinifera 65 0.0 857
WERAM-Glm-0045 GLYMA05G00460.1 Glycine max 63 0.0 852
WERAM-Met-0112 KEH32016 Medicago truncatula 64 0.0 805
WERAM-Mua-0066 GSMUA_Achr4P03250_001 Musa acuminata 59 0.0 777
WERAM-Sol-0055 Solyc03g115150.2.1 Solanum lycopersicum 58 0.0 763
WERAM-Prp-0049 EMJ12067 Prunus persica 67 0.0 755
WERAM-Org-0078 ORGLA07G0164500.1 Oryza glaberrima 55 0.0 748
WERAM-Ors-0072 OS07T0602200-01 Oryza sativa 55 0.0 748
WERAM-Orr-0082 ORUFI07G22240.1 Oryza rufipogon 55 0.0 748
WERAM-Orgl-0076 OGLUM07G21150.1 Oryza glumaepatula 55 0.0 746
WERAM-Ori-0088 BGIOSGA026083-PA Oryza indica 55 0.0 746
WERAM-Orbr-0087 OB07G26850.1 Oryza brachyantha 56 0.0 744
WERAM-Orni-0078 ONIVA07G19970.1 Oryza nivara 55 0.0 735
WERAM-Tra-0099 Traes_2DS_DFCAF1EA5.1 Triticum aestivum 55 0.0 731
WERAM-Sei-0109 Si029091m Setaria italica 56 0.0 730
WERAM-Zem-0143 GRMZM2G457889_P01 Zea mays 56 0.0 728
WERAM-Lep-0079 LPERR07G18450.1 Leersia perrieri 55 0.0 726
WERAM-Sob-0036 Sb02g038550.1 Sorghum bicolor 54 0.0 724
WERAM-Orp-0076 OPUNC07G19850.1 Oryza punctata 56 0.0 702
WERAM-Brd-0010 BRADI1G22240.1 Brachypodium distachyon 54 0.0 686
WERAM-Aet-0088 EMT31322 Aegilops tauschii 54 0.0 671
WERAM-Orl-0040 KN538895.1_FGP007 Oryza longistaminata 55 0.0 657
WERAM-Amt-0091 ERM99985 Amborella trichopoda 54 0.0 647
WERAM-Orb-0079 OBART07G21300.1 Oryza barthii 56 0.0 643
WERAM-Sem-0010 EFJ19764 Selaginella moellendorffii 49 3e-172 602
WERAM-Hov-0018 MLOC_16422.1 Hordeum vulgare 65 1e-127 454
WERAM-Tru-0053 TRIUR3_22556-P1 Triticum urartu 50 2e-126 451
WERAM-Php-0085 PP1S34_252V6.1 Physcomitrella patens 56 2e-110 397
WERAM-Ran-0209 ENSRNOP00000009295.5 Rattus norvegicus 46 5e-83 306
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 46 4e-82 303
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 45 5e-82 303
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 43 7e-82 302
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 44 8e-82 302
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 43 2e-81 301
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 46 3e-81 300
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 43 7e-81 299
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 45 7e-81 299
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 44 7e-81 299
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 45 2e-80 298
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 44 2e-80 298
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 44 2e-80 297
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 43 2e-80 297
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 42 4e-80 296
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 43 6e-80 296
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 42 1e-79 295
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 42 1e-79 294
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 42 2e-79 294
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 42 2e-79 294
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 46 2e-79 294
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 44 2e-79 294
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 42 3e-79 293
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 44 4e-79 293
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 42 4e-79 293
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 43 5e-79 293
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 44 1e-78 291
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 43 1e-78 291
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 47 2e-78 290
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 46 3e-78 290
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 45 9e-78 288
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 43 2e-77 287
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 42 2e-77 287
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 46 3e-77 287
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 43 3e-77 286
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 44 4e-77 286
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 42 5e-77 286
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 39 6e-77 286
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 44 9e-77 285
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 40 2e-76 284
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 45 3e-76 284
WERAM-Meg-0084 ENSMGAP00000008226.2 Meleagris gallopavo 39 3e-76 283
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 45 4e-76 283
WERAM-Caa-0034 KGT64501 Candida albicans 43 4e-76 283
WERAM-Fia-0117 ENSFALP00000010126.1 Ficedula albicollis 39 5e-76 283
WERAM-Tut-0141 ENSTTRP00000011664.1 Tursiops truncatus 41 3e-75 280
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 41 8e-75 279
WERAM-Sah-0095 ENSSHAP00000011018.1 Sarcophilus harrisii 37 2e-74 278
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 41 3e-74 276
WERAM-Anp-0022 ENSAPLP00000003127.1 Anas platyrhynchos 38 5e-74 276
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 41 1e-73 275
WERAM-Gaga-0067 ENSGALP00000010190.4 Gallus gallus 44 1e-73 275
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 41 2e-73 274
WERAM-Tas-0021 ENSTSYP00000002661.1 Tarsius syrichta 42 2e-73 274
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 40 2e-73 274
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 42 3e-73 274
WERAM-Ere-0078 ENSEEUP00000006690.1 Erinaceus europaeus 40 3e-73 273
WERAM-Nol-0005 ENSNLEP00000000692.2 Nomascus leucogenys 40 5e-73 273
WERAM-Pat-0122 ENSPTRP00000025053.4 Pan troglodytes 41 6e-73 273
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 41 6e-73 272
WERAM-Kop-0012 CAY68916 Komagataella pastoris 41 4e-72 270
WERAM-Mao-0002 MGG_01076T0 Magnaporthe oryzae 39 8e-72 269
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 39 9e-72 268
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 42 1e-71 268
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 41 2e-71 268
WERAM-Pes-0124 ENSPSIP00000014863.1 Pelodiscus sinensis 43 2e-71 267
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 40 3e-71 267
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 44 3e-71 266
WERAM-Coi-0028 EAS30926 Coccidioides immitis 41 4e-71 266
WERAM-Usm-0012 UM02102P0 Ustilago maydis 41 5e-71 266
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 41 1e-70 265
WERAM-Cae-0060 F41H10.6b Caenorhabditis elegans 39 2e-70 264
WERAM-Tag-0059 ENSTGUP00000004152.1 Taeniopygia guttata 40 4e-70 263
WERAM-Orla-0095 ENSORLP00000011723.1 Oryzias latipes 40 4e-70 263
WERAM-Poa-0196 ENSPPYP00000022747.2 Pongo abelii 41 5e-70 263
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 37 2e-69 261
WERAM-Asg-0010 AAS51704 Ashbya gossypii 41 4e-69 260
WERAM-Leo-0108 ENSLOCP00000014009.1 Lepisosteus oculatus 41 5e-69 259
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 42 5e-69 259
WERAM-Zyt-0016 Mycgr3P37223 Zymoseptoria tritici 41 7e-69 259
WERAM-Gam-0051 ENSGMOP00000005244.1 Gadus morhua 40 8e-69 259
WERAM-Scp-0036 SPBC800.03.1:pep Schizosaccharomyces pombe 41 8e-69 259
Created Date 25-Jun-2016