Tag |
Content |
WERAM ID |
WERAM-Sus-0012 |
Ensembl Protein ID |
ENSSSCP00000001039.2 |
Gene Name |
HDAC10 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
1.60e-134 |
448.5 |
3 |
584 |
HDAC |
Class-I |
8.20e-26 |
91.6 |
26 |
316 |
|
Organism |
Sus scrofa |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeelesltvdsd 90 ++lvy+e m++ + l+++ e+++E+peR+++ l+rl+++gl +++++l ar+a++ el lvHs e+v ll+ ++ l++eel++l+ ++d ENSSSCP00000001039.2 3 TALVYHEDMTAARLLWDDPECEIERPERLTTALERLRQRGLEQRCLRLVAREASEAELGLVHSPEYVALLRGTQALSTEELQALSRQFD 91 689************************************************************************************** PP class-2.txt 91 siylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtq 179 ++y++++++++arla+Ga+l+lvd+v++g ++ng+a+vRPPGHH+++++a+GFC+fn+va+aak++qqk+ +++ilivDwD+HhG+Gtq ENSSSCP00000001039.2 92 AVYFHPSTFHCARLAAGAALQLVDAVMAGVVRNGLALVRPPGHHSQRAAANGFCVFNSVAIAAKHAQQKHGLHRILIVDWDIHHGQGTQ 180 ***************************************************************************************** PP class-2.txt 180 eifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaeg 268 if++dp+vly+S+HRy++g+f+p + ++++d+vg+g+g+gf+vN++wn+ +mg+a+y+aaf +v+lp+a eF+ +lvlvsaGfD+a g ENSSSCP00000001039.2 181 YIFEDDPSVLYFSWHRYEHGRFWPYLRESDADTVGRGRGLGFTVNLPWNQVGMGNADYMAAFLQVLLPLAFEFNAELVLVSAGFDSAIG 269 ***************************************************************************************** PP class-2.txt 269 dplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322 d++g+++ t++c+a+lt+ l+ laggrv++vlEGGy+l++++++v ++v+aLlg ENSSSCP00000001039.2 270 DSEGQMQATPECFAHLTQLLQVLAGGRVCAVLEGGYHLESLSQSVCMMVQALLG 323 ****************************************************96 PP class-2.txt 99 ikaarlavGavlelvdkvlkgelkngfav 127 + a a G vl+l d++l+g+++ g+a+ ENSSSCP00000001039.2 457 QDKALSALGRVLHLLDRILDGQVSSGIAA 485 4678899*******************997 PP class-2.txt 222 nvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaG 262 +v v+++ ++ +l +vlp+a++F+Pdlvlv G ENSSSCP00000001039.2 547 HVSVPLPRTT---GGFLSCVLALVLPLAYSFQPDLVLVVLG 584 5555555554...678888999****************987 PP
HDAC Class-I
class-1.txt 22 mkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGasl 110 +p+rl+ + e + + gl+++ ++ +++as +el +hs ey+ +l+ ++ ++eel+ +++f+ + P f+ ++l +Ga+l ENSSSCP00000001039.2 26 ERPERLTTALERLRQRGLEQRCLRLVAREASEAELGLVHSPEYVALLRGTQALSTEELQALSRQFDAVYFHP---STFHCARLAAGAAL 111 57889999999999999***99999*************************9999999999999997665554...67999999****** PP class-1.txt 111 eaakkLnkkeadiainw.aGGlhhakkseasGfcyvnDivlailellkkh..krvlyididlhhGDgveeafyttdrvmtvsfhkygee 196 + ++ + + ++ hh+++ a Gfc n + +a + ++kh +r+l +d d+hhG g + f+ v+ s h+y+++ ENSSSCP00000001039.2 112 QLVDAVMAGVVRNGLALvRPPGHHSQRAAANGFCVFNSVAIAAKHAQQKHglHRILIVDWDIHHGQGTQYIFEDDPSVLYFSWHRYEHG 200 ****9999876655544133459********************9998876448*********************************985 PP class-1.txt 197 .ffPg..tGdlsdvgaekgkyyavnvPlkd.gidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfv 281 f+P d + vg ++g ++vn+P ++ g+ + y + f +v+ ++ f+ e v++ G Ds gD g+ + + + +a+ +++ ENSSSCP00000001039.2 201 rFWPYlrESDADTVGRGRGLGFTVNLPWNQvGMGNADYMAAFLQVLLPLAFEFNAELVLVSAGFDSAIGDSEGQMQATPECFAHLTQLL 289 38885225788899999999*******97659*****************************************************9999 PP class-1.txt 282 ksf.nlpllvlGGGGYtlrnvaRcwty 307 + + + GGY l+ +++ ++ ENSSSCP00000001039.2 290 QVLaGGRVCAVLEGGYHLESLSQSVCM 316 999666777788899999988877665 PP
|
Protein Sequence (Fasta) | MGTALVYHED MTAARLLWDD PECEIERPER LTTALERLRQ RGLEQRCLRL VAREASEAEL 60 GLVHSPEYVA LLRGTQALST EELQALSRQF DAVYFHPSTF HCARLAAGAA LQLVDAVMAG 120 VVRNGLALVR PPGHHSQRAA ANGFCVFNSV AIAAKHAQQK HGLHRILIVD WDIHHGQGTQ 180 YIFEDDPSVL YFSWHRYEHG RFWPYLRESD ADTVGRGRGL GFTVNLPWNQ VGMGNADYMA 240 AFLQVLLPLA FEFNAELVLV SAGFDSAIGD SEGQMQATPE CFAHLTQLLQ VLAGGRVCAV 300 LEGGYHLESL SQSVCMMVQA LLGDPAPPLS GPMVPHGSAL QSIQSVRAAQ APHWMSLRQQ 360 GVAPVLSSST RSPGQGPSPP MPAGPEFKTA AAQAVAALSS LLDQLRLRPT PPVRTALALP 420 APLDGDLVLP HDVLCQEGSA PQEETQAWAR PHEALAQDKA LSALGRVLHL LDRILDGQVS 480 SGIAATPGPA VAATLDVAIR CGLSHGAQRL LCVAVGQLDR PPHLTDDGGT LWLNVGGKEA 540 AALSMFHVSV PLPRTTGGFL SCVLALVLPL AYSFQPDLVL VVLGPAHGLQ DPQAALLAAL 600 LRGPAGGRVL ALVDEESTPQ LAVVLARVLH GEAPPSLGPF CMASLETMQA LMHLRGQLEP 660 QWKMLRVAGE TGRPGSA 677Protein Fasta Sequence
>ENSSSCP00000001039.2|Class-I|Sus scrofa MGTALVYHEDMTAARLLWDDPECEIERPERLTTALERLRQRGLEQRCLRLVAREASEAELGLVHSPEYVALLRGTQALSTEELQALSRQFDAVYFHPSTFHCARLAAGAALQLVDAVMAGVVRNGLALVRPPGHHSQRAAANGFCVFNSVAIAAKHAQQKHGLHRILIVDWDIHHGQGTQYIFEDDPSVLYFSWHRYEHGRFWPYLRESDADTVGRGRGLGFTVNLPWNQVGMGNADYMAAFLQVLLPLAFEFNAELVLVSAGFDSAIGDSEGQMQATPECFAHLTQLLQVLAGGRVCAVLEGGYHLESLSQSVCMMVQALLGDPAPPLSGPMVPHGSALQSIQSVRAAQAPHWMSLRQQGVAPVLSSSTRSPGQGPSPPMPAGPEFKTAAAQAVAALSSLLDQLRLRPTPPVRTALALPAPLDGDLVLPHDVLCQEGSAPQEETQAWARPHEALAQDKALSALGRVLHLLDRILDGQVSSGIAATPGPAVAATLDVAIRCGLSHGAQRLLCVAVGQLDRPPHLTDDGGTLWLNVGGKEAAALSMFHVSVPLPRTTGGFLSCVLALVLPLAYSFQPDLVLVVLGPAHGLQDPQAALLAALLRGPAGGRVLALVDEESTPQLAVVLARVLHGEAPPSLGPFCMASLETMQALMHLRGQLEPQWKMLRVAGETGRPGSA
|
Nucleotide Sequence (Fasta) | GAGACACCTT GTCAACCCTT CCCCGCTGGG GCCTGCGGCC TCCTTCCCGT CTGTGCCCGC 60 GGCCCCGGCC CCAGGCGTTG GGCTGCAGAG TGGGACGGGC AGTGCCCTCA CCTGCCTGTG 120 AGCGGTAGCG TCCTGCCCAG CCCGCAGAGG ACGGCCCCAG AGTGAACGCG GCCGGGCCAT 180 GGGGACCGCA CTGGTGTACC ACGAGGACAT GACGGCTGCG CGGCTGCTGT GGGACGACCC 240 CGAGTGCGAG ATCGAGCGTC CTGAGCGTCT GACCACAGCT CTGGAGCGCC TGCGGCAGCG 300 CGGCCTGGAG CAGAGGTGCC TGCGGCTGGT AGCCCGAGAG GCCTCGGAGG CGGAGCTGGG 360 CCTGGTGCAC AGCCCCGAGT ACGTGGCCCT GTTGCGGGGA ACCCAGGCCT TGAGCACTGA 420 GGAGCTCCAG GCCCTATCCA GACAGTTCGA CGCCGTCTAC TTCCATCCGA GTACCTTCCA 480 CTGTGCCCGG TTGGCCGCAG GGGCTGCTCT GCAGCTGGTG GATGCAGTGA TGGCGGGAGT 540 TGTGCGCAAC GGTCTCGCCC TGGTGAGGCC GCCTGGGCAC CACAGCCAGA GGGCCGCCGC 600 CAATGGATTC TGCGTGTTCA ATAGTGTGGC CATAGCAGCC AAGCATGCCC AGCAGAAACA 660 TGGACTGCAC AGGATCCTCA TCGTTGACTG GGACATCCAC CATGGTCAGG GCACCCAGTA 720 TATCTTTGAG GATGACCCCA GCGTCCTTTA CTTCTCCTGG CACCGCTATG AGCACGGGCG 780 CTTCTGGCCC TACCTGCGAG AGTCTGATGC AGACACCGTC GGCCGCGGGC GGGGCCTTGG 840 CTTCACGGTC AACCTGCCCT GGAACCAGGT CGGGATGGGA AACGCAGATT ACATGGCCGC 900 CTTCCTGCAG GTGCTGCTGC CCTTGGCCTT TGAGTTCAAC GCCGAGCTGG TCCTGGTCTC 960 CGCAGGGTTT GACTCCGCAA TCGGGGATTC TGAGGGGCAG ATGCAGGCCA CGCCCGAGTG 1020 CTTCGCCCAC CTCACGCAGC TGCTGCAGGT GCTGGCTGGT GGCCGGGTCT GCGCTGTGCT 1080 GGAGGGTGGC TACCACCTGG AGTCCCTCTC CCAGTCCGTG TGCATGATGG TACAAGCGCT 1140 GCTCGGCGAC CCCGCCCCGC CGCTCTCAGG GCCCATGGTG CCGCATGGCA GCGCCCTGCA 1200 GTCCATCCAG AGTGTCCGGG CAGCGCAGGC CCCTCACTGG ATGAGCCTCC GGCAGCAAGG 1260 TGTGGCCCCT GTACTGAGTT CCAGCACTCG CTCCCCGGGG CAGGGGCCCT CCCCTCCAAT 1320 GCCTGCGGGG CCTGAGTTCA AGACAGCAGC AGCCCAGGCC GTGGCTGCAC TCAGCTCCCT 1380 CCTGGACCAG CTACGCCTCC GTCCCACACC CCCTGTCCGC ACTGCTCTTG CCTTGCCTGC 1440 GCCACTGGAC GGTGACCTGG TCCTGCCCCA TGACGTCCTC TGTCAGGAGG GGTCAGCCCC 1500 ACAGGAGGAG ACGCAGGCCT GGGCCAGGCC ACACGAGGCC CTGGCCCAGG ATAAGGCCCT 1560 CTCTGCACTT GGGAGGGTCC TGCACCTCTT GGACAGGATC CTGGATGGGC AGGTGAGCAG 1620 CGGCATTGCA GCCACCCCAG GCCCTGCTGT AGCTGCCACC CTGGACGTGG CCATTCGGTG 1680 TGGCCTCTCC CACGGAGCCC AGAGGCTGCT TTGTGTGGCT GTGGGACAGC TGGATCGGCC 1740 CCCCCATCTC ACCGATGACG GGGGGACTCT ATGGCTGAAC GTCGGGGGCA AAGAGGCAGC 1800 TGCCCTGTCC ATGTTCCACG TCTCTGTGCC ACTGCCAAGG ACAACCGGTG GGTTCCTGAG 1860 CTGTGTCCTG GCCCTGGTGC TGCCCCTGGC CTACAGCTTC CAGCCTGACC TGGTGCTGGT 1920 GGTACTGGGG CCTGCTCATG GCCTGCAGGA CCCCCAAGCT GCACTCCTGG CTGCACTGCT 1980 TCGGGGCCCA GCAGGGGGCC GAGTCTTGGC CCTTGTGGAT GAGGAGTCCA CACCCCAGCT 2040 TGCGGTGGTC CTGGCCAGGG TGCTGCATGG AGAGGCACCC CCCAGCCTGG GCCCCTTCTG 2100 CATGGCCTCC CTAGAGACCA TGCAAGCCCT GATGCACTTG AGGGGGCAGC TGGAGCCACA 2160 GTGGAAGATG CTGCGAGTGG CCGGTGAGAC TGGGAGGCCA GGCTCAGCCT GAATGTTGGG 2220 GCCTTGGGCG ATAGCAGCCT TAGAGCTGTG GGGAGAGGGG CTCCTGTTCC GGGAATGAGG 2280 TGCTGCCCTG AACCAGCTCA CAGCTGTGTC AGGCTGCTTG CGCACCTCTT CCCAGCTCCT 2340 CCTTGAGTGC CCTGACCTGG TGGCTTGAAA TCGGCCAGGG TGGGACTATT TACACCCCGA 2400 AAAAGGCACT ACGAAGCAGT CCCCCAAGAG CCTGCAGGTG ACCATTCACC AGCACGCCTC 2460 TGTCTGAGGC CCCTGTCCGG AGGTCTAGGC TCCAAGGCTG CCAGGACCCT GGCTCCGGGG 2520 CTCTGTGACC CCTGCAGCGG CCTGGAACCC CCCTTCCCGC GACCCGCCTC TGCGCAGACC 2580 GCTCGCCCCT CGCTTCTCCG CGCCGCCGAA TCAGTAAACA TCCGTTCTGC GAAA
2635Nucleotide Fasta Sequence
>ENSSSCP00000001039.2|Class-I|Sus scrofa GAGACACCTTGTCAACCCTTCCCCGCTGGGGCCTGCGGCCTCCTTCCCGTCTGTGCCCGCGGCCCCGGCCCCAGGCGTTGGGCTGCAGAGTGGGACGGGCAGTGCCCTCACCTGCCTGTGAGCGGTAGCGTCCTGCCCAGCCCGCAGAGGACGGCCCCAGAGTGAACGCGGCCGGGCCATGGGGACCGCACTGGTGTACCACGAGGACATGACGGCTGCGCGGCTGCTGTGGGACGACCCCGAGTGCGAGATCGAGCGTCCTGAGCGTCTGACCACAGCTCTGGAGCGCCTGCGGCAGCGCGGCCTGGAGCAGAGGTGCCTGCGGCTGGTAGCCCGAGAGGCCTCGGAGGCGGAGCTGGGCCTGGTGCACAGCCCCGAGTACGTGGCCCTGTTGCGGGGAACCCAGGCCTTGAGCACTGAGGAGCTCCAGGCCCTATCCAGACAGTTCGACGCCGTCTACTTCCATCCGAGTACCTTCCACTGTGCCCGGTTGGCCGCAGGGGCTGCTCTGCAGCTGGTGGATGCAGTGATGGCGGGAGTTGTGCGCAACGGTCTCGCCCTGGTGAGGCCGCCTGGGCACCACAGCCAGAGGGCCGCCGCCAATGGATTCTGCGTGTTCAATAGTGTGGCCATAGCAGCCAAGCATGCCCAGCAGAAACATGGACTGCACAGGATCCTCATCGTTGACTGGGACATCCACCATGGTCAGGGCACCCAGTATATCTTTGAGGATGACCCCAGCGTCCTTTACTTCTCCTGGCACCGCTATGAGCACGGGCGCTTCTGGCCCTACCTGCGAGAGTCTGATGCAGACACCGTCGGCCGCGGGCGGGGCCTTGGCTTCACGGTCAACCTGCCCTGGAACCAGGTCGGGATGGGAAACGCAGATTACATGGCCGCCTTCCTGCAGGTGCTGCTGCCCTTGGCCTTTGAGTTCAACGCCGAGCTGGTCCTGGTCTCCGCAGGGTTTGACTCCGCAATCGGGGATTCTGAGGGGCAGATGCAGGCCACGCCCGAGTGCTTCGCCCACCTCACGCAGCTGCTGCAGGTGCTGGCTGGTGGCCGGGTCTGCGCTGTGCTGGAGGGTGGCTACCACCTGGAGTCCCTCTCCCAGTCCGTGTGCATGATGGTACAAGCGCTGCTCGGCGACCCCGCCCCGCCGCTCTCAGGGCCCATGGTGCCGCATGGCAGCGCCCTGCAGTCCATCCAGAGTGTCCGGGCAGCGCAGGCCCCTCACTGGATGAGCCTCCGGCAGCAAGGTGTGGCCCCTGTACTGAGTTCCAGCACTCGCTCCCCGGGGCAGGGGCCCTCCCCTCCAATGCCTGCGGGGCCTGAGTTCAAGACAGCAGCAGCCCAGGCCGTGGCTGCACTCAGCTCCCTCCTGGACCAGCTACGCCTCCGTCCCACACCCCCTGTCCGCACTGCTCTTGCCTTGCCTGCGCCACTGGACGGTGACCTGGTCCTGCCCCATGACGTCCTCTGTCAGGAGGGGTCAGCCCCACAGGAGGAGACGCAGGCCTGGGCCAGGCCACACGAGGCCCTGGCCCAGGATAAGGCCCTCTCTGCACTTGGGAGGGTCCTGCACCTCTTGGACAGGATCCTGGATGGGCAGGTGAGCAGCGGCATTGCAGCCACCCCAGGCCCTGCTGTAGCTGCCACCCTGGACGTGGCCATTCGGTGTGGCCTCTCCCACGGAGCCCAGAGGCTGCTTTGTGTGGCTGTGGGACAGCTGGATCGGCCCCCCCATCTCACCGATGACGGGGGGACTCTATGGCTGAACGTCGGGGGCAAAGAGGCAGCTGCCCTGTCCATGTTCCACGTCTCTGTGCCACTGCCAAGGACAACCGGTGGGTTCCTGAGCTGTGTCCTGGCCCTGGTGCTGCCCCTGGCCTACAGCTTCCAGCCTGACCTGGTGCTGGTGGTACTGGGGCCTGCTCATGGCCTGCAGGACCCCCAAGCTGCACTCCTGGCTGCACTGCTTCGGGGCCCAGCAGGGGGCCGAGTCTTGGCCCTTGTGGATGAGGAGTCCACACCCCAGCTTGCGGTGGTCCTGGCCAGGGTGCTGCATGGAGAGGCACCCCCCAGCCTGGGCCCCTTCTGCATGGCCTCCCTAGAGACCATGCAAGCCCTGATGCACTTGAGGGGGCAGCTGGAGCCACAGTGGAAGATGCTGCGAGTGGCCGGTGAGACTGGGAGGCCAGGCTCAGCCTGAATGTTGGGGCCTTGGGCGATAGCAGCCTTAGAGCTGTGGGGAGAGGGGCTCCTGTTCCGGGAATGAGGTGCTGCCCTGAACCAGCTCACAGCTGTGTCAGGCTGCTTGCGCACCTCTTCCCAGCTCCTCCTTGAGTGCCCTGACCTGGTGGCTTGAAATCGGCCAGGGTGGGACTATTTACACCCCGAAAAAGGCACTACGAAGCAGTCCCCCAAGAGCCTGCAGGTGACCATTCACCAGCACGCCTCTGTCTGAGGCCCCTGTCCGGAGGTCTAGGCTCCAAGGCTGCCAGGACCCTGGCTCCGGGGCTCTGTGACCCCTGCAGCGGCCTGGAACCCCCCTTCCCGCGACCCGCCTCTGCGCAGACCGCTCGCCCCTCGCTTCTCCGCGCCGCCGAATCAGTAAACATCCGTTCTGCGAAA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |