WERAM Information

Tag Content
WERAM ID WERAM-Bro-0041
Ensembl Protein ID Bo2g161300.1
Gene Name HDA18
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo2g161300 Bo2g161300.1 Bo2g161300.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-I 4.70e-13 50.9 12 215
Organism Brassica oleracea
Domain Profile
  HDAC Class-I
   class-1.txt  5 yaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskel 83
                    yde++ ++ +  g++hp  p+r++ +   +   gl ++  ++  +ka+ ++l+ +h++e+++++k+ +++++++  +++
  Bo2g161300.1 12 LLYDERMCKHDTpdGEDHPECPNRIKAIWAKLQLTGLAQRCAVLGGSKAEDKHLQLVHTKEHVNLVKRLSTKKKDSRRNKI 92
                  56666666665444899***********9999999**********************************999988666443 PP
   class-1.txt 160 krvlyididlhhGDgveeafyttdrvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdg 224
                   k++l +d d+hhG+g ++ f +  rv+  s+h+++++ f  tGd  d+ +  g  + +nvP ++g
  Bo2g161300.1 152 KKILIVDWDVHHGNGTQKMFWKDPRVLVFSVHRHDDGSFYPTGDDGDYDK-VGEGFNINVPWEQG 215
                   89**********************************98888999888764.3445******9988 PP
Protein Sequence
(Fasta)		MAGESRKRKV GLLYDERMCK HDTPDGEDHP ECPNRIKAIW AKLQLTGLAQ RCAVLGGSKA 60
EDKHLQLVHT KEHVNLVKRL STKKKDSRRN KIASKLDSVY LNGGSSEAAY LAAGSVVEVA 120
EKVAEGELDR RFAIVRPPGH HAEAVAPDLG VKKILIVDWD VHHGNGTQKM FWKDPRVLVF 180
SVHRHDDGSF YPTGDDGDYD KVGEGFNINV PWEQGRRSGF DAAVGDPRGG CFVTPYGYSV 240
MLKKLRKDCD GIRGRVQSWV SCKVLLEEKQ IEDSFEEYPY EYARGYAHTG LHLQMSYRGR 300
QKLLVQLSTL EVALEEKAAL QTKVAELQGE KLRLQDKYAA VAKEAAEQLT HVSSELREAK 360
IDLDFQRELF KKASEEKKLL EGRVLKLEAE LQKEASDKLR LRISRDRYAA EVKEAAEHLA 420
KVRSELRDVQ IDLNLHRKLP
Nucleotide Sequence
(Fasta)		ATGGCCGGCG AATCAAGAAA GCGAAAGGTT GGTCTTTTAT ACGACGAGAG GATGTGCAAA 60
CACGACACAC CTGACGGTGA GGACCATCCC GAGTGTCCTA ATCGCATCAA AGCTATCTGG 120
GCGAAGCTTC AGCTCACTGG TCTCGCTCAA AGGTGTGCGG TTCTTGGTGG TAGCAAAGCG 180
GAAGATAAGC ATCTTCAACT GGTTCACACG AAGGAGCATG TTAATTTAGT TAAGAGGTTA 240
AGCACAAAGA AGAAAGATTC TCGGAGAAAC AAGATTGCTT CAAAGTTGGA TTCGGTATAT 300
CTTAATGGAG GTTCATCAGA AGCCGCGTAT CTTGCAGCTG GATCCGTTGT AGAGGTGGCT 360
GAGAAAGTTG CAGAAGGAGA ACTAGATCGT CGCTTTGCTA TTGTTAGGCC ACCAGGGCAC 420
CATGCTGAGG CAGTTGCGCC AGATCTAGGT GTCAAGAAAA TTCTGATTGT TGATTGGGAT 480
GTTCATCATG GAAACGGCAC ACAGAAGATG TTCTGGAAAG ATCCTCGTGT ACTAGTGTTC 540
TCTGTTCATA GGCATGATGA TGGAAGCTTC TATCCAACGG GAGATGATGG AGATTATGAC 600
AAGGTTGGGG AAGGGTTTAA CATAAACGTT CCATGGGAGC AAGGAAGAAG ATCTGGGTTT 660
GATGCAGCTG TTGGTGATCC GCGTGGGGGT TGTTTTGTTA CACCATATGG ATATTCAGTG 720
ATGTTGAAGA AGCTGAGGAA AGATTGTGAT GGCATTAGAG GGAGGGTACA ATCTTGGGTC 780
AGTTGCAAAG TTTTGCTTGA AGAGAAACAA ATTGAAGATT CCTTTGAAGA ATACCCATAT 840
GAGTACGCAA GAGGCTATGC GCATACTGGC CTTCACTTGC AGATGAGTTA CCGTGGGAGG 900
CAAAAACTCC TAGTCCAGTT AAGCACCTTG GAGGTGGCCT TGGAAGAAAA GGCGGCGCTA 960
CAGACCAAGG TGGCTGAACT GCAAGGCGAG AAGTTGCGCC TTCAAGACAA ATATGCAGCG 1020
GTGGCAAAGG AGGCCGCTGA GCAACTGACG CATGTTTCCA GCGAACTGAG AGAGGCCAAG 1080
ATCGACCTAG ACTTTCAGCG TGAGCTTTTC AAGAAGGCCA GCGAAGAGAA GAAGTTGCTG 1140
GAGGGGCGGG TCCTTAAGCT TGAAGCTGAA CTGCAGAAGG AGGCTAGCGA TAAGTTGCGT 1200
CTTCGAATCT CACGAGACAG ATATGCAGCG GAGGTGAAGG AGGCCGCTGA GCATCTGGCC 1260
AAAGTTCGCA GCGAGCTGAG AGATGTCCAA ATTGATCTTA ACTTGCACCG CAAGCTTCCT 1320
TAG 1324
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0146 Bra029339.1-P Brassica rapa 75 8e-177 617
WERAM-Art-0146 AT5G61060.1 Arabidopsis thaliana 63 1e-107 387
WERAM-Arl-0149 scaffold_802745.1 Arabidopsis lyrata 62 2e-104 376
WERAM-Glm-0045 GLYMA05G00460.1 Glycine max 49 4e-94 342
WERAM-Prp-0049 EMJ12067 Prunus persica 55 6e-92 335
WERAM-Pot-0045 POPTR_0004s09180.1 Populus trichocarpa 46 1e-89 327
WERAM-Viv-0107 VIT_17s0000g07280.t01 Vitis vinifera 54 3e-89 326
WERAM-Thc-0031 EOY22062 Theobroma cacao 53 5e-88 322
WERAM-Mua-0066 GSMUA_Achr4P03250_001 Musa acuminata 53 2e-85 313
WERAM-Met-0112 KEH32016 Medicago truncatula 51 3e-83 306
WERAM-Ors-0072 OS07T0602200-01 Oryza sativa 40 4e-79 292
WERAM-Orr-0082 ORUFI07G22240.1 Oryza rufipogon 40 4e-79 292
WERAM-Org-0078 ORGLA07G0164500.1 Oryza glaberrima 41 7e-79 291
WERAM-Orgl-0076 OGLUM07G21150.1 Oryza glumaepatula 40 1e-78 291
WERAM-Ori-0088 BGIOSGA026083-PA Oryza indica 40 1e-78 291
WERAM-Orbr-0087 OB07G26850.1 Oryza brachyantha 44 2e-78 290
WERAM-Orni-0078 ONIVA07G19970.1 Oryza nivara 40 2e-78 290
WERAM-Orb-0079 OBART07G21300.1 Oryza barthii 50 4e-77 286
WERAM-Lep-0079 LPERR07G18450.1 Leersia perrieri 50 6e-77 285
WERAM-Sei-0109 Si029091m Setaria italica 51 9e-77 285
WERAM-Orp-0076 OPUNC07G19850.1 Oryza punctata 49 6e-76 281
WERAM-Zem-0143 GRMZM2G457889_P01 Zea mays 50 9e-76 281
WERAM-Sob-0036 Sb02g038550.1 Sorghum bicolor 50 2e-75 280
WERAM-Sol-0055 Solyc03g115150.2.1 Solanum lycopersicum 42 1e-73 274
WERAM-Tra-0099 Traes_2DS_DFCAF1EA5.1 Triticum aestivum 47 6e-71 265
WERAM-Hov-0018 MLOC_16422.1 Hordeum vulgare 48 2e-70 264
WERAM-Amt-0091 ERM99985 Amborella trichopoda 50 9e-69 258
WERAM-Brd-0010 BRADI1G22240.1 Brachypodium distachyon 51 2e-68 256
WERAM-Tru-0053 TRIUR3_22556-P1 Triticum urartu 42 6e-63 238
WERAM-Sem-0022 EFJ08599 Selaginella moellendorffii 43 3e-59 226
WERAM-Php-0085 PP1S34_252V6.1 Physcomitrella patens 44 6e-57 218
WERAM-Orl-0040 KN538895.1_FGP007 Oryza longistaminata 48 3e-56 216
WERAM-Aet-0088 EMT31322 Aegilops tauschii 46 2e-53 207
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 38 3e-43 173
WERAM-Ran-0201 ENSRNOP00000063689.2 Rattus norvegicus 38 3e-42 170
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 38 1e-41 168
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 38 4e-41 166
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 36 2e-40 164
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 35 2e-40 164
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 36 2e-40 164
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 37 3e-40 163
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 38 4e-40 163
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 36 5e-40 162
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 36 5e-40 162
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 37 7e-40 162
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 37 9e-40 162
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 36 9e-40 161
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 37 1e-39 161
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 37 1e-39 161
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 37 1e-39 161
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 36 1e-39 161
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 38 1e-39 161
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 36 2e-39 160
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 37 3e-39 160
WERAM-Tut-0056 ENSTTRP00000004443.1 Tursiops truncatus 36 3e-39 160
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 36 3e-39 160
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 36 3e-39 160
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 44 4e-39 159
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 37 4e-39 159
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 36 6e-39 159
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 36 6e-39 159
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 36 8e-39 159
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 36 9e-39 158
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 36 1e-38 158
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 36 1e-38 157
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 35 1e-38 157
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 35 2e-38 157
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 42 2e-38 157
WERAM-Anp-0061 ENSAPLP00000006782.1 Anas platyrhynchos 42 2e-38 157
WERAM-Gaga-0067 ENSGALP00000010190.4 Gallus gallus 42 2e-38 157
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 36 2e-38 157
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 36 2e-38 157
WERAM-Meg-0108 ENSMGAP00000010913.2 Meleagris gallopavo 43 3e-38 157
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 34 4e-38 156
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 35 4e-38 156
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 42 6e-38 155
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 36 7e-38 155
WERAM-Bot-0159 ENSBTAP00000023621.5 Bos taurus 42 7e-38 155
WERAM-Gaa-0148 ENSGACP00000019223.1 Gasterosteus aculeatus 42 1e-37 155
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 42 1e-37 154
WERAM-Sah-0025 ENSSHAP00000002837.1 Sarcophilus harrisii 43 1e-37 154
WERAM-Pes-0124 ENSPSIP00000014863.1 Pelodiscus sinensis 41 1e-37 154
WERAM-Pat-0104 ENSPTRP00000022412.3 Pan troglodytes 42 2e-37 154
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 35 3e-37 153
WERAM-Nol-0194 ENSNLEP00000021748.1 Nomascus leucogenys 42 4e-37 153
WERAM-Poa-0042 ENSPPYP00000005074.1 Pongo abelii 42 4e-37 153
WERAM-Otg-0061 ENSOGAP00000004404.2 Otolemur garnettii 42 7e-37 152
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 36 7e-37 152
WERAM-Prc-0083 ENSPCAP00000007167.1 Procavia capensis 41 1e-36 151
WERAM-Leo-0044 ENSLOCP00000006280.1 Lepisosteus oculatus 40 2e-36 150
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 37 6e-36 149
WERAM-Kop-0012 CAY68916 Komagataella pastoris 35 7e-36 149
WERAM-Caa-0034 KGT64501 Candida albicans 34 2e-35 147
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 36 2e-35 147
WERAM-Tas-0021 ENSTSYP00000002661.1 Tarsius syrichta 33 2e-35 147
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 33 2e-35 147
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 36 3e-35 147
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 35 5e-35 146
WERAM-Coi-0028 EAS30926 Coccidioides immitis 36 1e-34 144
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 36 2e-34 144
Created Date 25-Jun-2016