Tag |
Content |
WERAM ID |
WERAM-Arl-0150 |
Ensembl Protein ID |
scaffold_802746.1 |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
2.40e-123 |
412.2 |
27 |
377 |
HDAC |
Class-I |
3.40e-29 |
103.1 |
29 |
368 |
|
Organism |
Arabidopsis lyrata |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsi 92 +glvyde+m+kh+++++++ +E+p+Ri+ i+++lq ag++++++ l ++ka++++l+lvH+++hv+ +++ + k+++++ +++++ dsi scaffold_802746.1 27 VGLVYDETMCKHDTPNGEV--DVECPDRIRFIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNFVKSIStKQKDSRRNRIASVLDSI 116 78***************99..8**************************************************998888899999******** PP class-2.txt 93 ylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk 161 yl+ s++aa la+G+v+++++kv++gel++gfa+vRPPGHHae+++amGFClfnnvavaa++l+++ + scaffold_802746.1 117 YLNGGSSEAAYLAAGSVVNVAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASYLLNERS 185 ***************************************************************998765 PP class-2.txt 142 GFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylSlHR...........ydkgsffpesgsgavdevgegkgegfn 222 F +f + v ++q +l vkkilivDwD+HhGnGtq++f+kdp+vl++S+HR yd+gsf+p+s++g+++ vgeg+g+gfn scaffold_802746.1 187 SFGVFVLMFVCFLQMQPDLGVKKILIVDWDIHHGNGTQKMFWKDPRVLIFSVHRfkvagnayvarYDHGSFYPASDDGDYNMVGEGPGKGFN 278 566777777888899999***********************************6444444444448************************** PP class-2.txt 223 vNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeave 314 +Nv+w++g++gda+ylaa++++++p++keF+Pd++l+saGfDaa gdplgg+++t+++y+ + k+l+++a+g++vl+lEGGynl+++a+++ scaffold_802746.1 279 INVPWEQGGCGDADYLAAWDHILIPVTKEFNPDIILLSAGFDAAIGDPLGGCCITPDGYSVMLKKLMEFAQGKIVLALEGGYNLESLAKSSL 370 ******************************************************************************************** PP class-2.txt 315 avvkaLl 321 a+v++Ll scaffold_802746.1 371 ACVQVLL 377 ******8 PP
HDAC Class-I
class-1.txt 5 yaydedvgeyhy..gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPv 94 +yde++ ++ + g+ + p r++ + e + g++++ ++ +ka+ ++l +h++++++f+k+++++++++ ++++ +v + + scaffold_802746.1 29 LVYDETMCKHDTpnGEVDVECPDRIRFIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNFVKSISTKQKDSRRNRIA--SVLDSIYL 118 5666666666552255567789999999999999999*********************************999887775544..67777888 PP class-1.txt 95 fdglfeycqlitGasleaakkLnkkeadi..ainwaGGlhhakkseasGfcyvnDivlailellk..kh.....................kr 161 g e + l +G+ ++ a+k+ ++e d ai hha +ea Gfc n++ +a ll +h k+ scaffold_802746.1 119 NGGSSEAAYLAAGSVVNVAEKVAEGELDCgfAIVRPP-GHHAEADEAMGFCLFNNVAVAASYLLNerSHsfgvfvlmfvcflqmqpdlgvKK 209 889999999***************9988611555554.5****************9988766654222222222333333333333344479 PP class-1.txt 162 vlyididlhhGDgveeafyttdrvmtvsfhkyg............eeffPgt..GdlsdvgaekgkyyavnvPlkd.gidDesyekifksvi 238 +l +d d+hhG+g ++ f + rv+ s+h+++ +f+P++ Gd + vg++ gk + +nvP ++ g+ D y + +++ scaffold_802746.1 210 ILIVDWDIHHGNGTQKMFWKDPRVLIFSVHRFKvagnayvarydhGSFYPASddGDYNMVGEGPGKGFNINVPWEQgGCGDADYLAAWDHIL 301 ******************************98533322222222235999865599*****************98737************** PP class-1.txt 239 skvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRc 304 +v++ f+P++++l G D+ gD+lg ++ +g++ ++k + +f + ++++ GGY+l+ +a+ scaffold_802746.1 302 IPVTKEFNPDIILLSAGFDAAIGDPLGGCCITPDGYSVMLKKLMEFaQGKIVLALEGGYNLESLAKS 368 **********************************************6666777779*****999875 PP
|
Protein Sequence (Fasta) | MTMTGESSGK KCGDGGGKVA GKSQRKVGLV YDETMCKHDT PNGEVDVECP DRIRFIWEKL 60 QLAGVTQRCV VLGGSKAEDK HLKLVHTKKH VNFVKSISTK QKDSRRNRIA SVLDSIYLNG 120 GSSEAAYLAA GSVVNVAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASYL 180 LNERSHSFGV FVLMFVCFLQ MQPDLGVKKI LIVDWDIHHG NGTQKMFWKD PRVLIFSVHR 240 FKVAGNAYVA RYDHGSFYPA SDDGDYNMVG EGPGKGFNIN VPWEQGGCGD ADYLAAWDHI 300 LIPVTKEFNP DIILLSAGFD AAIGDPLGGC CITPDGYSVM LKKLMEFAQG KIVLALEGGY 360 NLESLAKSSL ACVQVLLEEK GIQCSSGAYP LESTRRVIRA VRERLCTYWP SLADELSCKL 420 IDQKTLTPVG HLSSCLPFPS SFFVGREFIV TGARTEGPNL TVLPSLEPRS TSHLSPHSHL 480 SVTNKRKAPA SGLTSSYRFS ELEDVMVEKV LPSFQEEVMG MEFQDCIAFG KEISYKENRE 540 LRYNVFAASD TLMTSNENLK NLSADKNPAD AILHEVEELK SLWAARDGEL EARRKELKAK 600 KMELETWLML VGAREDEFRG LRAKVESLMR ERDEAVAKAE RLDKELQEER PRSRLENEEM 660 DMDSEDEDMD MDSEELEHDL KTMSREFKKD INLVFEKFKK DNELFIGELK KERELAITAA 720 VITTRYQVCR EWKSQGTLSL ELKFAAEVYH KLRSLIEKRG KSHIYATVEM YEEEWKEFVG 780 PRHHPTVTVK SKD 793Protein Fasta Sequence
>scaffold_802746.1|Class-I|Arabidopsis lyrata MTMTGESSGKKCGDGGGKVAGKSQRKVGLVYDETMCKHDTPNGEVDVECPDRIRFIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNFVKSISTKQKDSRRNRIASVLDSIYLNGGSSEAAYLAAGSVVNVAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASYLLNERSHSFGVFVLMFVCFLQMQPDLGVKKILIVDWDIHHGNGTQKMFWKDPRVLIFSVHRFKVAGNAYVARYDHGSFYPASDDGDYNMVGEGPGKGFNINVPWEQGGCGDADYLAAWDHILIPVTKEFNPDIILLSAGFDAAIGDPLGGCCITPDGYSVMLKKLMEFAQGKIVLALEGGYNLESLAKSSLACVQVLLEEKGIQCSSGAYPLESTRRVIRAVRERLCTYWPSLADELSCKLIDQKTLTPVGHLSSCLPFPSSFFVGREFIVTGARTEGPNLTVLPSLEPRSTSHLSPHSHLSVTNKRKAPASGLTSSYRFSELEDVMVEKVLPSFQEEVMGMEFQDCIAFGKEISYKENRELRYNVFAASDTLMTSNENLKNLSADKNPADAILHEVEELKSLWAARDGELEARRKELKAKKMELETWLMLVGAREDEFRGLRAKVESLMRERDEAVAKAERLDKELQEERPRSRLENEEMDMDSEDEDMDMDSEELEHDLKTMSREFKKDINLVFEKFKKDNELFIGELKKERELAITAAVITTRYQVCREWKSQGTLSLELKFAAEVYHKLRSLIEKRGKSHIYATVEMYEEEWKEFVGPRHHPTVTVKSKD
|
Nucleotide Sequence (Fasta) | GACTGTCACA TCTCCCGGAG ATGACAATGA CCGGCGAATC TTCCGGCAAG AAATGCGGAG 60 ACGGTGGCGG TAAAGTCGCC GGGAAAAGCC AGCGAAAGGT GGGTCTTGTT TATGACGAGA 120 CGATGTGCAA ACACGACACA CCTAACGGTG AGGTTGACGT AGAGTGTCCC GATCGCATCA 180 GATTTATCTG GGAGAAGCTT CAGCTCGCCG GGGTCACCCA AAGATGTGTG GTTCTTGGTG 240 GTAGTAAAGC GGAAGATAAG CATCTCAAAT TGGTTCACAC AAAGAAACAT GTTAATTTCG 300 TGAAGAGTAT TAGCACAAAA CAGAAAGATT CTCGGAGAAA CAGGATTGCT TCAGTGTTGG 360 ATTCGATTTA TCTTAATGGA GGTTCATCTG AAGCCGCATA TCTTGCAGCT GGATCTGTTG 420 TAAATGTGGC AGAGAAAGTT GCAGAAGGAG AGTTAGATTG TGGCTTTGCT ATAGTGAGGC 480 CCCCAGGACA CCATGCCGAG GCAGATGAAG CCATGGGTTT TTGTTTATTC AACAATGTAG 540 CCGTTGCTGC TAGTTATTTA CTAAACGAAA GATCACATTC CTTTGGTGTG TTTGTTCTCA 600 TGTTCGTTTG CTTTCTTCAA ATGCAGCCGG ATCTAGGTGT CAAGAAAATT CTGATTGTTG 660 ATTGGGATAT CCATCATGGA AATGGTACAC AGAAGATGTT CTGGAAAGAT CCTCGCGTAC 720 TGATATTCTC TGTTCATAGG TTTAAAGTGG CTGGAAATGC ATACGTGGCT AGGTATGATC 780 ACGGAAGTTT CTATCCAGCG AGTGATGATG GAGATTATAA CATGGTTGGG GAAGGTCCAG 840 GTAAAGGGTT TAACATAAAC GTTCCATGGG AGCAAGGAGG ATGTGGAGAT GCAGATTATC 900 TTGCCGCATG GGACCATATC TTGATTCCTG TGACTAAGGA GTTTAATCCC GATATTATTT 960 TGCTTTCAGC TGGATTTGAT GCAGCTATCG GTGATCCGCT TGGGGGTTGT TGTATTACAC 1020 CAGATGGATA TTCAGTTATG TTGAAGAAGC TAATGGAGTT TGCACAAGGA AAGATAGTGC 1080 TGGCGTTAGA GGGAGGGTAC AATCTTGAGT CATTGGCAAA GTCTTCACTC GCATGTGTCC 1140 AAGTTCTGCT TGAAGAAAAA GGAATTCAAT GTTCTTCTGG AGCATACCCA TTAGAATCTA 1200 CACGGCGTGT CATAAGAGCG GTACGCGAAA GACTATGCAC ATATTGGCCT TCACTTGCAG 1260 ATGAGCTATC ATGTAAGCTG ATTGATCAGA AAACTCTTAC TCCAGTTGGG CACCTTTCTT 1320 CTTGTCTACC ATTTCCATCT TCATTTTTCG TTGGCCGTGA GTTTATAGTT ACTGGCGCAA 1380 GGACAGAAGG TCCTAACCTG ACCGTGCTTC CCTCCTTAGA GCCTAGAAGC ACCAGTCATC 1440 TTTCGCCACA CTCGCATCTT TCTGTCACCA ACAAAAGAAA AGCTCCTGCC TCTGGTTTGA 1500 CCTCAAGCTA TCGTTTCTCA GAGTTGGAGG ATGTTATGGT GGAGAAGGTT CTTCCGTCTT 1560 TTCAAGAAGA GGTCATGGGT ATGGAATTCC AGGATTGCAT CGCTTTCGGC AAAGAAATTT 1620 CCTACAAGGA GAATAGAGAG CTGAGGTACA ATGTTTTTGC TGCTTCTGAT ACATTGATGA 1680 CGTCTAATGA GAATTTAAAG AACCTAAGTG CGGACAAAAA CCCTGCTGAC GCTATCCTTC 1740 ATGAAGTGGA AGAGTTAAAG TCTCTATGGG CTGCACGAGA TGGAGAATTG GAGGCAAGGA 1800 GAAAAGAGTT AAAGGCCAAA AAGATGGAGC TAGAAACGTG GCTAATGTTG GTTGGCGCTC 1860 GAGAAGATGA GTTTCGTGGT CTTCGTGCCA AAGTAGAGAG TTTGATGCGG GAGCGAGATG 1920 AGGCGGTAGC GAAAGCTGAG CGCCTAGATA AGGAACTCCA AGAAGAAAGG CCAAGAAGCC 1980 GACTTGAGAA TGAAGAAATG GATATGGACT CAGAAGATGA AGACATGGAC ATGGACTCAG 2040 AAGAACTCGA ACACGATCTC AAAACCATGT CTAGGGAGTT CAAGAAAGAC ATAAACCTTG 2100 TCTTCGAGAA GTTCAAAAAA GACAATGAGC TTTTCATTGG GGAGTTAAAG AAAGAAAGGG 2160 AGCTTGCCAT CACCGCAGCA GTTATCACCA CTCGGTATCA AGTATGTCGC GAATGGAAGA 2220 GCCAGGGTAC TCTAAGTTTG GAGCTTAAAT TTGCAGCAGA AGTATACCAC AAGCTCCGCT 2280 CTTTGATTGA AAAGCGCGGG AAGAGCCACA TTTACGCAAC TGTAGAAATG TATGAGGAGG 2340 AGTGGAAGGA GTTTGTTGGT CCTCGTCATC ACCCAACAGT AACAGTAAAG AGTAAAGACT 2400 AAGCAGGTTA GATAGAATAT TAGAAG
2427Nucleotide Fasta Sequence
>scaffold_802746.1|Class-I|Arabidopsis lyrata GACTGTCACATCTCCCGGAGATGACAATGACCGGCGAATCTTCCGGCAAGAAATGCGGAGACGGTGGCGGTAAAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGTCTTGTTTATGACGAGACGATGTGCAAACACGACACACCTAACGGTGAGGTTGACGTAGAGTGTCCCGATCGCATCAGATTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCACCCAAAGATGTGTGGTTCTTGGTGGTAGTAAAGCGGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTCGTGAAGAGTATTAGCACAAAACAGAAAGATTCTCGGAGAAACAGGATTGCTTCAGTGTTGGATTCGATTTATCTTAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGATCTGTTGTAAATGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTTTGCTATAGTGAGGCCCCCAGGACACCATGCCGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTAGCCGTTGCTGCTAGTTATTTACTAAACGAAAGATCACATTCCTTTGGTGTGTTTGTTCTCATGTTCGTTTGCTTTCTTCAAATGCAGCCGGATCTAGGTGTCAAGAAAATTCTGATTGTTGATTGGGATATCCATCATGGAAATGGTACACAGAAGATGTTCTGGAAAGATCCTCGCGTACTGATATTCTCTGTTCATAGGTTTAAAGTGGCTGGAAATGCATACGTGGCTAGGTATGATCACGGAAGTTTCTATCCAGCGAGTGATGATGGAGATTATAACATGGTTGGGGAAGGTCCAGGTAAAGGGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGAGATGCAGATTATCTTGCCGCATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAATCCCGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGTTGTTGTATTACACCAGATGGATATTCAGTTATGTTGAAGAAGCTAATGGAGTTTGCACAAGGAAAGATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCATTGGCAAAGTCTTCACTCGCATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATGTTCTTCTGGAGCATACCCATTAGAATCTACACGGCGTGTCATAAGAGCGGTACGCGAAAGACTATGCACATATTGGCCTTCACTTGCAGATGAGCTATCATGTAAGCTGATTGATCAGAAAACTCTTACTCCAGTTGGGCACCTTTCTTCTTGTCTACCATTTCCATCTTCATTTTTCGTTGGCCGTGAGTTTATAGTTACTGGCGCAAGGACAGAAGGTCCTAACCTGACCGTGCTTCCCTCCTTAGAGCCTAGAAGCACCAGTCATCTTTCGCCACACTCGCATCTTTCTGTCACCAACAAAAGAAAAGCTCCTGCCTCTGGTTTGACCTCAAGCTATCGTTTCTCAGAGTTGGAGGATGTTATGGTGGAGAAGGTTCTTCCGTCTTTTCAAGAAGAGGTCATGGGTATGGAATTCCAGGATTGCATCGCTTTCGGCAAAGAAATTTCCTACAAGGAGAATAGAGAGCTGAGGTACAATGTTTTTGCTGCTTCTGATACATTGATGACGTCTAATGAGAATTTAAAGAACCTAAGTGCGGACAAAAACCCTGCTGACGCTATCCTTCATGAAGTGGAAGAGTTAAAGTCTCTATGGGCTGCACGAGATGGAGAATTGGAGGCAAGGAGAAAAGAGTTAAAGGCCAAAAAGATGGAGCTAGAAACGTGGCTAATGTTGGTTGGCGCTCGAGAAGATGAGTTTCGTGGTCTTCGTGCCAAAGTAGAGAGTTTGATGCGGGAGCGAGATGAGGCGGTAGCGAAAGCTGAGCGCCTAGATAAGGAACTCCAAGAAGAAAGGCCAAGAAGCCGACTTGAGAATGAAGAAATGGATATGGACTCAGAAGATGAAGACATGGACATGGACTCAGAAGAACTCGAACACGATCTCAAAACCATGTCTAGGGAGTTCAAGAAAGACATAAACCTTGTCTTCGAGAAGTTCAAAAAAGACAATGAGCTTTTCATTGGGGAGTTAAAGAAAGAAAGGGAGCTTGCCATCACCGCAGCAGTTATCACCACTCGGTATCAAGTATGTCGCGAATGGAAGAGCCAGGGTACTCTAAGTTTGGAGCTTAAATTTGCAGCAGAAGTATACCACAAGCTCCGCTCTTTGATTGAAAAGCGCGGGAAGAGCCACATTTACGCAACTGTAGAAATGTATGAGGAGGAGTGGAAGGAGTTTGTTGGTCCTCGTCATCACCCAACAGTAACAGTAAAGAGTAAAGACTAAGCAGGTTAGATAGAATATTAGAAG
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |