WERAM Information


Tag Content
WERAM ID WERAM-Asm-0146
Ensembl Protein ID ENSAMXP00000013789.1
Gene Name HDAC4 (1 to many)
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSAMXG00000013400.1 ENSAMXT00000013789.1 ENSAMXP00000013789.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 2.90e-141 470.6 89 953
HDAC Class-I 1.20e-28 100.8 83 918
Organism Astyanax mexicanus
Domain Profile
  HDAC Class-II

           class-2.txt  27 peRiqailsrlqea..gllekleelka.rkatkeelqlvHseehvelletae.klekeelesl 85 
+R i + +++ +++ +l++ k +++ l+l H++e++e+ ++ e + ++ele++
ENSAMXP00000013789.1 89 VQRQLLIAEFQRQHeqLSRQHEAQLQEhIKHQQDLLALQHQQELLEHHRKMEkHRVEQELEKQ 151
333222222222221011222233333123333334455666666555555544444555543 PP
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvH....seehvelletaeklekeeles.. 84
+glvyd+ m khq++++n+++hpE+++Riq+i+srlqe+gl++++e+l++++a+k+ q++ +++v l+++ ++ k++ ++
ENSAMXP00000013789.1 615 TGLVYDSLMQKHQCMCGNTNTHPEHAGRIQSIWSRLQETGLRGQCECLSNENAQKSVSQKIRilyiRAQLVLLVSSVGSMAKSKGSVis 703
79************************************************999887666555555667777777777788887777788 PP
class-2.txt 85 .........ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkk 164
++vdsd+i++e++s++aarlavG+v+elv+kv++gelkngfavvRPPGHHaeest+mGFC+fn+va+aakllqq+l+v+k
ENSAMXP00000013789.1 704 mfvrlpcggIGVDSDTIWNEVHSSSAARLAVGSVVELVFKVASGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSK 792
9**************************************************************************************** PP
class-2.txt 165 ilivDwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawnggl...mgdaeylaafrevvlpiak 250
ilivDwDvHhGnGtq++fy+dp+vly+SlHRyd+g+ffp gsga+devg+g+g+gfnvN+a++ggl mgdaeyl afr+vv+pia+
ENSAMXP00000013789.1 793 ILIVDWDVHHGNGTQQAFYDDPNVLYISLHRYDDGNFFP--GSGAPDEVGSGPGVGFNVNMAFTGGLdppMGDAEYLSAFRTVVMPIAN 879
***************************************..************************************************ PP
class-2.txt 251 eFkPdlvlvsaGfDaaeg..dplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
eF+Pd+vlvsaGfDa+eg plgg++vt kc+++ltkql++laggrvvl+lEGG++l+ai++a+e +v+aLlg
ENSAMXP00000013789.1 880 EFAPDVVLVSAGFDAVEGhpPPLGGYKVTSKCFGYLTKQLMGLAGGRVVLALEGGHDLRAICDASEVCVSALLG 953
******************9999**************************************************96 PP

  HDAC Class-I

           class-1.txt  23 kpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkf 86 
+++ ++ +L+++ ++ ++ + ++a+ +e +k++++ l ++++ e++++++k+
ENSAMXP00000013789.1 83 LKHKQQVQRQLLIAEFQRQHEQLSRQHEAQLQEHIKHQQDL----LALQHQQELLEHHRKMEKH 142
55555555555555545555555555555555555544431....1111111111222222222 PP
class-1.txt 132 hhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyav 217
hha s Gfcy n + +a l++ + +++l +d d+hhG+g ++afy v+ +s+h+y++ +ffPg+G ++vg + g + v
ENSAMXP00000013789.1 761 HHAEESTPMGFCYFNSVAIAAKLLQQrlNVSKILIVDWDVHHGNGTQQAFYDDPNVLYISLHRYDDgNFFPGSGAPDEVGSGPGVGFNV 849
*******************988777644678*********************************9746********************* PP
class-1.txt 218 nvPlkdgid....DesyekifksviskvieafePeavvlqcGaDslagD..rlgefnlsikghaecvkf 280
n+ ++ g+d D +y + f++v+ ++ + f P++v++ G D++ g +lg ++++ k ++ k
ENSAMXP00000013789.1 850 NMAFTGGLDppmgDAEYLSAFRTVVMPIANEFAPDVVLVSAGFDAVEGHppPLGGYKVTSKCFGYLTKQ 918
***99998766669********************************99733699999999988876554 PP

Protein Sequence
(Fasta)
WTFSSAQTQL FQREQPYLFL SLSLSLPAVD LSSALPLRVP PAAIPMDLRV DQSPGSGSGS 60
GLVSDSVDSS LQDQQLQQEL LSLKHKQQVQ RQLLIAEFQR QHEQLSRQHE AQLQEHIKHQ 120
QDLLALQHQQ ELLEHHRKME KHRVEQELEK QQREQKLQLL KNKERGQESA VASTEVKMRL 180
QEFVLNKKKA LAQRNLNHCI TNNPRYWYGK TQHSSLDQSS PPQTGVSAYN HPAVGVYDSK 240
DFPLRKTASE PNLKVRSRLK QKVTERRSSP LLRRRDNPIS TAKKRSLDMA ARSCSLPSAA 300
GALREHSWPL TLSGLNGVNV DELITDHSSV TNRLAGREGS MSQLSLYTSP SLPNITLGLP 360
ATATNNVTST QQDSECLPVT NLPITTQFLA TSHLPSYLGT SDSATSHNAL LQHMVLLEQS 420
ATPSPLATGI SALPLQSPAL HKLRQHRPLG RTQSAPLPQS NQALQQLVVQ QQHQQFLEKH 480
KQQFQQLHIN KILTKPGEVG RQHQSHPEET EEELREQQDS AQEEGLPLSV IIKQEPPDPQ 540
EEERQEEQEL LFRQQALLLE QQRIHQLRNY QASMEAAGLS VSFPGHRPLS RAQSSPASAS 600
FITVQDPPSK PRFTTGLVYD SLMQKHQCMC GNTNTHPEHA GRIQSIWSRL QETGLRGQCE 660
CLSNENAQKS VSQKIRILYI RAQLVLLVSS VGSMAKSKGS VISMFVRLPC GGIGVDSDTI 720
WNEVHSSSAA RLAVGSVVEL VFKVASGELK NGFAVVRPPG HHAEESTPMG FCYFNSVAIA 780
AKLLQQRLNV SKILIVDWDV HHGNGTQQAF YDDPNVLYIS LHRYDDGNFF PGSGAPDEVG 840
SGPGVGFNVN MAFTGGLDPP MGDAEYLSAF RTVVMPIANE FAPDVVLVSA GFDAVEGHPP 900
PLGGYKVTSK CFGYLTKQLM GLAGGRVVLA LEGGHDLRAI CDASEVCVSA LLGKELDPLC 960
PDLLKQRPNA NAVSSMEKVL ETQSKYWRSV QRYVSSVGYS LLEAQRCDSE ENETVSAMAS 1020
LSVATMEKSR TEDEPMEEEP PL 1042
Nucleotide Sequence
(Fasta)
TGGACATTCA GCAGTGCACA AACCCAACTT TTTCAGCGTG AACAACCGTA TCTGTTTCTC 60
TCTCTCTCTT TGTCTCTTCC TGCAGTTGAC CTGAGCTCCG CTCTGCCTCT CAGAGTTCCT 120
CCAGCAGCCA TTCCTATGGA CCTGCGGGTG GACCAGTCTC CAGGCTCGGG TTCGGGCTCG 180
GGTCTGGTAT CAGACTCGGT GGACTCCAGC CTGCAGGACC AGCAGCTGCA GCAGGAGCTC 240
CTGTCCCTGA AACACAAGCA GCAGGTCCAG AGACAGCTCC TCATCGCCGA GTTCCAGCGG 300
CAGCACGAGC AGCTCTCCCG CCAGCATGAA GCCCAGCTGC AGGAGCACAT CAAGCATCAG 360
CAGGACTTAC TGGCTCTTCA GCACCAGCAG GAGCTGCTGG AGCACCACAG GAAGATGGAG 420
AAGCACCGGG TGGAGCAGGA GCTGGAGAAA CAGCAGCGGG AGCAGAAACT ACAGCTCCTC 480
AAGAACAAGG AGAGGGGTCA GGAGAGTGCC GTGGCCAGTA CAGAGGTGAA GATGAGGCTG 540
CAGGAGTTTG TGCTGAATAA GAAGAAAGCT TTGGCCCAGC GCAACCTCAA CCACTGCATC 600
ACCAACAACC CTCGCTACTG GTACGGGAAA ACTCAGCACA GTTCTCTAGA CCAGAGCTCC 660
CCCCCTCAGA CTGGAGTCTC TGCCTACAAC CACCCGGCTG TGGGCGTCTA CGACTCCAAG 720
GACTTCCCAC TCCGCAAGAC AGCATCGGAA CCCAACCTGA AGGTTCGCTC TCGTCTGAAG 780
CAGAAGGTCA CAGAGAGGCG GAGCAGTCCT CTACTGCGGC GGAGAGACAA CCCCATCAGC 840
ACCGCCAAGA AGCGCTCTCT GGACATGGCA GCCCGGTCAT GCAGCTTGCC CTCTGCTGCT 900
GGAGCCTTGA GAGAGCACAG TTGGCCTCTT ACTCTCTCTG GATTAAATGG GGTCAATGTA 960
GATGAATTAA TCACAGATCA TTCGTCTGTA ACTAACAGGC TTGCTGGACG GGAAGGCTCG 1020
ATGAGTCAGC TGTCTCTGTA CACCTCTCCC TCGCTACCCA ACATCACTCT GGGCCTGCCG 1080
GCCACCGCCA CCAATAATGT GACGTCTACC CAGCAGGACA GTGAGTGCCT GCCTGTGACC 1140
AATTTACCCA TAACCACCCA GTTCCTGGCC ACGTCTCACC TGCCTTCTTA CCTGGGCACA 1200
TCTGACTCAG CCACTTCCCA CAATGCCCTG CTGCAGCACA TGGTCCTGCT GGAGCAGTCA 1260
GCCACGCCGA GTCCTTTAGC TACAGGCATC AGCGCCCTCC CTCTGCAGTC TCCTGCCCTC 1320
CACAAGCTGA GGCAGCACCG GCCGCTGGGT CGCACCCAGT CCGCCCCCCT GCCCCAGAGC 1380
AACCAGGCCC TGCAGCAGCT GGTGGTCCAG CAGCAGCACC AGCAGTTCCT GGAGAAACAC 1440
AAGCAGCAGT TCCAGCAGCT CCACATCAAC AAGATCCTGA CGAAGCCTGG TGAGGTGGGG 1500
CGACAGCATC AAAGCCACCC TGAAGAGACG GAGGAGGAGC TCAGGGAGCA ACAGGACTCC 1560
GCCCAGGAGG AGGGGCTACC GCTCAGTGTC ATCATTAAAC AGGAACCCCC GGACCCCCAG 1620
GAGGAGGAGA GACAGGAAGA GCAGGAGCTG CTCTTCAGAC AGCAGGCCCT CCTGCTGGAG 1680
CAGCAGAGGA TTCATCAGTT GAGGAACTAT CAGGCCTCCA TGGAGGCGGC GGGTCTGTCG 1740
GTCAGTTTCC CCGGGCACCG CCCCCTGTCC CGGGCTCAGT CCTCTCCTGC ATCCGCCTCC 1800
TTCATCACTG TGCAGGACCC GCCCTCCAAA CCTCGCTTCA CTACAGGTCT TGTGTACGAC 1860
TCTCTGATGC AGAAGCATCA GTGCATGTGT GGGAACACCA ACACACACCC GGAGCACGCC 1920
GGCCGCATCC AGAGCATCTG GTCCCGGCTG CAGGAGACGG GTTTACGAGG ACAGTGTGAA 1980
TGTTTATCCA ATGAAAACGC CCAAAAATCT GTATCTCAGA AAATTAGAAT ATTATATATT 2040
AGAGCCCAAT TGGTACTTTT GGTAAGCAGT GTGGGCAGTA TGGCCAAGTC AAAAGGTTCT 2100
GTAATTTCCA TGTTCGTCAG GTTGCCGTGT GGTGGGATCG GGGTGGACAG TGATACCATC 2160
TGGAATGAGG TGCACTCCTC CAGTGCAGCT CGTCTGGCTG TGGGCTCTGT GGTTGAGTTG 2220
GTTTTTAAAG TGGCTTCAGG AGAACTGAAG AACGGCTTTG CTGTGGTGAG ACCACCCGGA 2280
CACCACGCTG AGGAGAGCAC TCCTATGGGC TTCTGCTACT TTAACTCGGT TGCCATAGCA 2340
GCTAAACTTT TACAACAAAG GCTCAATGTC AGTAAAATCC TGATTGTCGA CTGGGATGTG 2400
CACCACGGCA ATGGCACTCA GCAGGCTTTC TATGACGACC CCAATGTTCT GTACATCTCT 2460
CTCCATCGCT ACGATGATGG AAACTTCTTC CCTGGAAGTG GAGCTCCTGA TGAGGTGGGG 2520
AGTGGTCCAG GTGTGGGCTT TAATGTGAAC ATGGCCTTCA CTGGGGGGCT GGATCCACCA 2580
ATGGGGGACG CTGAATACCT GTCTGCTTTC AGGACGGTGG TGATGCCCAT TGCGAATGAG 2640
TTTGCTCCAG ATGTTGTTCT GGTGTCTGCA GGCTTTGATG CTGTGGAGGG ACACCCGCCT 2700
CCACTGGGAG GATACAAAGT CACGTCCAAA TGTTTTGGTT ACCTCACAAA GCAGCTGATG 2760
GGATTGGCTG GAGGACGGGT GGTGCTGGCG CTGGAGGGAG GTCATGATCT CAGAGCTATA 2820
TGTGATGCTT CAGAGGTCTG TGTATCTGCT CTGCTGGGGA AAGAGCTGGA CCCGCTCTGC 2880
CCAGACCTGC TAAAGCAGAG ACCCAACGCT AACGCTGTGA GCTCTATGGA GAAAGTTCTA 2940
GAAACTCAGA GTAAGTACTG GAGGTCAGTT CAGAGGTACG TCTCCTCGGT GGGCTACTCT 3000
CTGCTGGAGG CTCAGCGCTG TGACTCAGAG GAGAACGAGA CCGTCAGCGC CATGGCGTCT 3060
CTATCTGTGG CAACAATGGA GAAAAGCAGG ACTGAAGACG AGCCGATGGA GGAAGAGCCG 3120
CCGCTGTAA
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Dar-0198 ENSDARP00000131327.1 Danio rerio 73 0.0 1276
WERAM-Leo-0082 ENSLOCP00000011105.1 Lepisosteus oculatus 70 0.0 1264
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 66 0.0 1198
WERAM-Orn-0049 ENSONIP00000005635.1 Oreochromis niloticus 70 0.0 1184
WERAM-Gaa-0020 ENSGACP00000002894.1 Gasterosteus aculeatus 67 0.0 1181
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 64 0.0 1177
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 65 0.0 1170
WERAM-Pes-0174 ENSPSIP00000020522.1 Pelodiscus sinensis 65 0.0 1168
WERAM-Sus-0169 ENSSSCP00000025173.1 Sus scrofa 67 0.0 1159
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 63 0.0 1158
WERAM-Myl-0159 ENSMLUP00000013297.2 Myotis lucifugus 66 0.0 1158
WERAM-Xim-0022 ENSXMAP00000002092.1 Xiphophorus maculatus 69 0.0 1158
WERAM-Anc-0099 ENSACAP00000009498.3 Anolis carolinensis 63 0.0 1157
WERAM-Lac-0062 ENSLACP00000008432.1 Latimeria chalumnae 63 0.0 1156
WERAM-Cap-0143 ENSCPOP00000011770.2 Cavia porcellus 67 0.0 1156
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 65 0.0 1153
WERAM-Fec-0140 ENSFCAP00000013207.3 Felis catus 67 0.0 1150
WERAM-Pof-0029 ENSPFOP00000001978.1 Poecilia formosa 69 0.0 1145
WERAM-Tar-0063 ENSTRUP00000012899.1 Takifugu rubripes 65 0.0 1144
WERAM-Chs-0068 ENSCSAP00000002314.1 Chlorocebus sabaeus 67 0.0 1142
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 66 0.0 1130
WERAM-Caf-0133 ENSCAFP00000018541.3 Canis familiaris 64 0.0 1123
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 67 0.0 1122
WERAM-Gog-0157 ENSGGOP00000013985.2 Gorilla gorilla 61 0.0 1105
WERAM-Ten-0099 ENSTNIP00000000138.1 Tetraodon nigroviridis 67 0.0 1102
WERAM-Dan-0037 ENSDNOP00000003826.3 Dasypus novemcinctus 65 0.0 1087
WERAM-Poa-0116 ENSPPYP00000014905.2 Pongo abelii 62 0.0 1045
WERAM-Mam-0041 ENSMMUP00000007984.2 Macaca mulatta 63 0.0 1041
WERAM-Dio-0038 ENSDORP00000004330.1 Dipodomys ordii 60 0.0 970
WERAM-Ova-0067 ENSOARP00000007394.1 Ovis aries 52 0.0 811
WERAM-Caj-0108 ENSCJAP00000018977.1 Callithrix jacchus 51 0.0 809
WERAM-Paa-0012 ENSPANP00000003104.1 Papio anubis 68 0.0 809
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 50 0.0 795
WERAM-Nol-0183 ENSNLEP00000020216.1 Nomascus leucogenys 52 0.0 794
WERAM-Pat-0158 ENSPTRP00000032389.5 Pan troglodytes 52 0.0 794
WERAM-Mup-0161 ENSMPUP00000013847.1 Mustela putorius furo 52 0.0 790
WERAM-Mum-0077 ENSMUSP00000008995.8 Mus musculus 79 0.0 789
WERAM-Aim-0096 ENSAMEP00000008994.1 Ailuropoda melanoleuca 53 0.0 788
WERAM-Ran-0135 ENSRNOP00000027622.5 Rattus norvegicus 79 0.0 787
WERAM-Bot-0159 ENSBTAP00000023621.5 Bos taurus 79 0.0 783
WERAM-Loa-0107 ENSLAFP00000009167.2 Loxodonta africana 79 0.0 783
WERAM-Ict-0095 ENSSTOP00000009983.2 Ictidomys tridecemlineatus 78 0.0 779
WERAM-Hos-0025 ENSP00000264606.3 Homo sapiens 78 0.0 776
WERAM-Gam-0063 ENSGMOP00000006368.1 Gadus morhua 79 0.0 768
WERAM-Otg-0061 ENSOGAP00000004404.2 Otolemur garnettii 78 0.0 768
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 76 0.0 729
WERAM-Tut-0038 ENSTTRP00000002947.1 Tursiops truncatus 78 0.0 696
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 47 0.0 668
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 65 0.0 653
WERAM-Ptv-0156 ENSPVAP00000012934.1 Pteropus vampyrus 64 0.0 644
WERAM-Orc-0081 ENSOCUP00000007421.3 Oryctolagus cuniculus 63 5e-177 619
WERAM-Ocp-0087 ENSOPRP00000007869.2 Ochotona princeps 63 2e-176 617
WERAM-Mod-0095 ENSMODP00000032765.2 Monodelphis domestica 65 3e-176 616
WERAM-Prc-0092 ENSPCAP00000008303.1 Procavia capensis 64 2e-175 613
WERAM-Eqc-0174 ENSECAP00000019543.1 Equus caballus 63 3e-175 613
WERAM-Sah-0025 ENSSHAP00000002837.1 Sarcophilus harrisii 62 3e-174 610
WERAM-Mae-0145 ENSMEUP00000015025.1 Macropus eugenii 64 2e-173 607
WERAM-Mim-0022 ENSMICP00000002393.1 Microcebus murinus 62 1e-165 581
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 66 4e-159 560
WERAM-Vip-0084 ENSVPAP00000007862.1 Vicugna pacos 72 2e-149 527
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 54 4e-147 520
WERAM-Ect-0082 ENSETEP00000009275.1 Echinops telfairi 55 2e-133 474
WERAM-Tub-0137 ENSTBEP00000014805.1 Tupaia belangeri 68 4e-130 463
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 48 2e-116 417
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 47 2e-112 404
WERAM-Chh-0086 ENSCHOP00000009630.1 Choloepus hoffmanni 56 4e-109 393
WERAM-Cis-0060 ENSCSAVP00000013851.1 Ciona savignyi 56 2e-92 338
WERAM-Brr-0181 Bra035942.1-P Brassica rapa 45 5e-76 283
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 40 9e-76 283
WERAM-Bro-0168 Bo9g014470.1 Brassica oleracea 42 1e-75 282
WERAM-Sem-0010 EFJ19764 Selaginella moellendorffii 42 2e-75 281
Created Date 25-Jun-2016