Tag |
Content |
WERAM ID |
WERAM-Brr-0061 |
Ensembl Protein ID |
Bra011444.1-P |
Gene Name |
hda14 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
3.70e-96 |
323.1 |
96 |
414 |
HDAC |
Class-I |
1.10e-28 |
101.7 |
121 |
382 |
|
Organism |
Brassica rapa |
Domain Profile |
HDAC Class-II
class-2.txt 13 hqaleenkekhpEkpeRiqailsrlqeagllek.....leelka.rkatkeelqlvHseehvelletae.klekeelesltvdsdsiylesksika 101 ++al +nk++hpE+++R+ ai+++l++++l++k ++el++ ++at e++++vH++++v le+a+ +++++ l + + s+ +y++s++++ Bra011444.1-P 96 SAALGHNKDSHPECSARVPAIVTALEKNELTRKfrgseILELANfKNATIEDIANVHEKAYVLGLEKAMgEASDSGLI-FIEGSGPTYATSTTFQD 190 556778999**********************9544545777777699*********************9778888777.899************** PP class-2.txt 102 arlavGavlelvdkvlkgelkn.....gfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylS 192 + +a+Ga + lvd+v++++ + gfa++RPPGHHa ++ +mGFC+f nva+aa+++q+ + +++++i+D+DvHhGnGt+++f +dp++++lS Bra011444.1-P 191 SLIAAGAGMALVDSVVTASRNSfdpptGFALIRPPGHHAVPKGPMGFCVFGNVAIAARHAQRAHGLTRVFIIDFDVHHGNGTNDAFSEDPDIFFLS 286 *****************9975588899********************************************************************* PP class-2.txt 193 lHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkql 288 +H ++gs +p g+g+++++g+gkgeg+++N++++gg+ gd +++af+e+++p++++FkPdl+lvsaG+Da+ dpl++l++t+ +y +l+k++ Bra011444.1-P 287 TH--QDGS-YP--GTGKMSDIGKGKGEGTTLNLPLPGGS-GDIAMRTAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDI 376 **..9***.78..8***********************99.******************************************************** PP class-2.txt 289 lkl....aggrvvlvlEGGynlkaiaeaveavvkaLlg 322 ++l +ggr+v++lEGGynl++++++v+ +++aLlg Bra011444.1-P 377 KQLakevCGGRCVFFLEGGYNLESLSASVADSFRALLG 414 ***9999*****************************96 PP
HDAC Class-I
class-1.txt 29 ltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdg..lfeycqlitGasleaakkLnkkead 122 + +eL ++ s+ le+ + k+a+ e+++++h+++y+ l+k e +++ ++ P + f+ + + +Ga ++ ++ + + +++ Bra011444.1-P 121 EKNELTRKFRGSEILELANFKNATIEDIANVHEKAYVLGLEKAMGEASDSGL-----IFIEGSGPTYATstTFQDSLIAAGAGMALVDSVVTASRN 211 346777888888899999999****************999998877766544.....457888887655115555677899988877776655443 PP class-1.txt 123 .......iainwaGGlhhakkseasGfcyvnDivlailellkkh..krvlyididlhhGDgveeafyttdrvmtvsfhkygeeffPgtGdlsdvga 209 a+ hha + Gfc ++ +a + ++ h rv id+d+hhG+g ++af++ ++ +s h+ g +PgtG++sd+g+ Bra011444.1-P 212 sfdpptgFALIRP-PGHHAVPKGPMGFCVFGNVAIAARHAQRAHglTRVFIIDFDVHHGNGTNDAFSEDPDIFFLSTHQDGS--YPGTGKMSDIGK 304 1111111333333.349**********************99976448*******************************9998..9*********** PP class-1.txt 210 ekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlp 287 +kg ++n+Pl g D +++ f+++i + +++f+P+ +++ G D+ D+l++ ++++ ++ + k +k+ + Bra011444.1-P 305 GKGEGTTLNLPLPGGSGDIAMRTAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDIKQLAKE 382 ************************************************************998887777777776543 PP
|
Protein Sequence (Fasta) | MLFCLLLIYV STKGLMSFPC SQSFSVLEVT FLLFLGSGEV SGIRGFNLRN GLSLWRKHLV 60 KHNKGAYICC SFSTEKDPLL PSVQQLTDAR VIYSVSAALG HNKDSHPECS ARVPAIVTAL 120 EKNELTRKFR GSEILELANF KNATIEDIAN VHEKAYVLGL EKAMGEASDS GLIFIEGSGP 180 TYATSTTFQD SLIAAGAGMA LVDSVVTASR NSFDPPTGFA LIRPPGHHAV PKGPMGFCVF 240 GNVAIAARHA QRAHGLTRVF IIDFDVHHGN GTNDAFSEDP DIFFLSTHQD GSYPGTGKMS 300 DIGKGKGEGT TLNLPLPGGS GDIAMRTAFE EIIVPCVQRF KPDLILVSAG YDAHVLDPLA 360 NLQFTTGTYY SLAKDIKQLA KEVCGGRCVF FLEGGYNLES LSASVADSFR ALLGEESLAS 420 EFDNPAYLYD EPMRKVRDAI ERAKSIHCL 449Protein Fasta Sequence
>Bra011444.1-P|Class-I|Brassica rapa MLFCLLLIYVSTKGLMSFPCSQSFSVLEVTFLLFLGSGEVSGIRGFNLRNGLSLWRKHLVKHNKGAYICCSFSTEKDPLLPSVQQLTDARVIYSVSAALGHNKDSHPECSARVPAIVTALEKNELTRKFRGSEILELANFKNATIEDIANVHEKAYVLGLEKAMGEASDSGLIFIEGSGPTYATSTTFQDSLIAAGAGMALVDSVVTASRNSFDPPTGFALIRPPGHHAVPKGPMGFCVFGNVAIAARHAQRAHGLTRVFIIDFDVHHGNGTNDAFSEDPDIFFLSTHQDGSYPGTGKMSDIGKGKGEGTTLNLPLPGGSGDIAMRTAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDIKQLAKEVCGGRCVFFLEGGYNLESLSASVADSFRALLGEESLASEFDNPAYLYDEPMRKVRDAIERAKSIHCL
|
Nucleotide Sequence (Fasta) | ATGCTGTTTT GTCTGCTCCT CATTTACGTT TCAACTAAAG GACTGATGAG CTTCCCATGT 60 TCTCAATCTT TCTCTGTACT GGAAGTGACA TTTTTATTGT TTTTAGGAAG TGGTGAAGTT 120 TCTGGGATCA GAGGTTTTAA TTTGCGGAAT GGATTGAGTT TGTGGAGAAA ACATCTTGTG 180 AAGCACAACA AGGGAGCTTA CATTTGTTGC TCATTTAGTA CAGAGAAGGA TCCTCTGTTA 240 CCTTCTGTCC AGCAGTTAAC CGATGCTCGT GTCATCTATA GTGTATCTGC TGCACTGGGT 300 CATAACAAGG ACTCGCATCC GGAATGCAGC GCAAGAGTTC CTGCTATTGT TACAGCTCTT 360 GAGAAGAATG AGCTCACTCG TAAGTTCCGT GGCTCGGAGA TTCTTGAACT TGCAAATTTC 420 AAGAATGCGA CTATAGAAGA CATTGCAAAT GTTCACGAAA AAGCTTATGT CTTAGGCCTG 480 GAGAAGGCAA TGGGTGAAGC TTCAGATTCA GGACTAATTT TCATTGAAGG TTCTGGACCA 540 ACATACGCCA CTTCAACGAC ATTCCAAGAT TCACTTATCG CAGCAGGAGC TGGAATGGCT 600 TTAGTTGATT CAGTGGTCAC AGCATCAAGA AACAGCTTCG ACCCTCCAAC TGGCTTTGCA 660 TTGATAAGAC CTCCAGGACA CCACGCTGTG CCAAAAGGCC CTATGGGTTT CTGCGTTTTT 720 GGTAATGTAG CAATCGCAGC TCGTCATGCT CAACGAGCAC ATGGTCTGAC ACGCGTCTTC 780 ATTATTGACT TCGATGTTCA CCATGGAAAT GGCACAAACG ATGCGTTTTC TGAGGATCCT 840 GATATATTCT TTTTGTCAAC GCATCAGGAT GGAAGCTATC CTGGAACAGG GAAGATGAGT 900 GACATAGGCA AAGGAAAAGG TGAAGGCACC ACCCTGAACT TACCTTTACC TGGAGGATCA 960 GGTGATATTG CAATGAGAAC TGCTTTTGAA GAAATCATTG TTCCATGTGT TCAACGTTTC 1020 AAGCCAGATC TTATTCTTGT TTCTGCCGGG TATGATGCTC ATGTCCTGGA TCCACTAGCG 1080 AATCTACAGT TCACAACCGG AACATACTAC TCATTGGCTA AAGATATAAA ACAATTAGCT 1140 AAAGAAGTAT GCGGAGGGCG TTGTGTGTTC TTCCTGGAAG GAGGATACAA TCTTGAGTCA 1200 CTTTCAGCAT CAGTAGCAGA CTCGTTTCGA GCTTTGCTTG GGGAAGAAAG CTTGGCATCA 1260 GAGTTCGATA ATCCAGCTTA CTTGTATGAT GAACCGATGA GGAAAGTGCG AGATGCAATT 1320 GAGAGAGCCA AAAGCATTCA TTGTTTATGA
1351Nucleotide Fasta Sequence
>Bra011444.1-P|Class-I|Brassica rapa ATGCTGTTTTGTCTGCTCCTCATTTACGTTTCAACTAAAGGACTGATGAGCTTCCCATGTTCTCAATCTTTCTCTGTACTGGAAGTGACATTTTTATTGTTTTTAGGAAGTGGTGAAGTTTCTGGGATCAGAGGTTTTAATTTGCGGAATGGATTGAGTTTGTGGAGAAAACATCTTGTGAAGCACAACAAGGGAGCTTACATTTGTTGCTCATTTAGTACAGAGAAGGATCCTCTGTTACCTTCTGTCCAGCAGTTAACCGATGCTCGTGTCATCTATAGTGTATCTGCTGCACTGGGTCATAACAAGGACTCGCATCCGGAATGCAGCGCAAGAGTTCCTGCTATTGTTACAGCTCTTGAGAAGAATGAGCTCACTCGTAAGTTCCGTGGCTCGGAGATTCTTGAACTTGCAAATTTCAAGAATGCGACTATAGAAGACATTGCAAATGTTCACGAAAAAGCTTATGTCTTAGGCCTGGAGAAGGCAATGGGTGAAGCTTCAGATTCAGGACTAATTTTCATTGAAGGTTCTGGACCAACATACGCCACTTCAACGACATTCCAAGATTCACTTATCGCAGCAGGAGCTGGAATGGCTTTAGTTGATTCAGTGGTCACAGCATCAAGAAACAGCTTCGACCCTCCAACTGGCTTTGCATTGATAAGACCTCCAGGACACCACGCTGTGCCAAAAGGCCCTATGGGTTTCTGCGTTTTTGGTAATGTAGCAATCGCAGCTCGTCATGCTCAACGAGCACATGGTCTGACACGCGTCTTCATTATTGACTTCGATGTTCACCATGGAAATGGCACAAACGATGCGTTTTCTGAGGATCCTGATATATTCTTTTTGTCAACGCATCAGGATGGAAGCTATCCTGGAACAGGGAAGATGAGTGACATAGGCAAAGGAAAAGGTGAAGGCACCACCCTGAACTTACCTTTACCTGGAGGATCAGGTGATATTGCAATGAGAACTGCTTTTGAAGAAATCATTGTTCCATGTGTTCAACGTTTCAAGCCAGATCTTATTCTTGTTTCTGCCGGGTATGATGCTCATGTCCTGGATCCACTAGCGAATCTACAGTTCACAACCGGAACATACTACTCATTGGCTAAAGATATAAAACAATTAGCTAAAGAAGTATGCGGAGGGCGTTGTGTGTTCTTCCTGGAAGGAGGATACAATCTTGAGTCACTTTCAGCATCAGTAGCAGACTCGTTTCGAGCTTTGCTTGGGGAAGAAAGCTTGGCATCAGAGTTCGATAATCCAGCTTACTTGTATGATGAACCGATGAGGAAAGTGCGAGATGCAATTGAGAGAGCCAAAAGCATTCATTGTTTATGA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |