WERAM Information


Tag Content
WERAM ID WERAM-Brr-0061
Ensembl Protein ID Bra011444.1-P
Gene Name hda14
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra011444 Bra011444.1 Bra011444.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 3.70e-96 323.1 96 414
HDAC Class-I 1.10e-28 101.7 121 382
Organism Brassica rapa
Domain Profile
  HDAC Class-II

    class-2.txt  13 hqaleenkekhpEkpeRiqailsrlqeagllek.....leelka.rkatkeelqlvHseehvelletae.klekeelesltvdsdsiylesksika 101
++al +nk++hpE+++R+ ai+++l++++l++k ++el++ ++at e++++vH++++v le+a+ +++++ l + + s+ +y++s++++
Bra011444.1-P 96 SAALGHNKDSHPECSARVPAIVTALEKNELTRKfrgseILELANfKNATIEDIANVHEKAYVLGLEKAMgEASDSGLI-FIEGSGPTYATSTTFQD 190
556778999**********************9544545777777699*********************9778888777.899************** PP
class-2.txt 102 arlavGavlelvdkvlkgelkn.....gfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylS 192
+ +a+Ga + lvd+v++++ + gfa++RPPGHHa ++ +mGFC+f nva+aa+++q+ + +++++i+D+DvHhGnGt+++f +dp++++lS
Bra011444.1-P 191 SLIAAGAGMALVDSVVTASRNSfdpptGFALIRPPGHHAVPKGPMGFCVFGNVAIAARHAQRAHGLTRVFIIDFDVHHGNGTNDAFSEDPDIFFLS 286
*****************9975588899********************************************************************* PP
class-2.txt 193 lHRydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkql 288
+H ++gs +p g+g+++++g+gkgeg+++N++++gg+ gd +++af+e+++p++++FkPdl+lvsaG+Da+ dpl++l++t+ +y +l+k++
Bra011444.1-P 287 TH--QDGS-YP--GTGKMSDIGKGKGEGTTLNLPLPGGS-GDIAMRTAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDI 376
**..9***.78..8***********************99.******************************************************** PP
class-2.txt 289 lkl....aggrvvlvlEGGynlkaiaeaveavvkaLlg 322
++l +ggr+v++lEGGynl++++++v+ +++aLlg
Bra011444.1-P 377 KQLakevCGGRCVFFLEGGYNLESLSASVADSFRALLG 414
***9999*****************************96 PP

  HDAC Class-I

    class-1.txt  29 ltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdg..lfeycqlitGasleaakkLnkkead 122
+ +eL ++ s+ le+ + k+a+ e+++++h+++y+ l+k e +++ ++ P + f+ + + +Ga ++ ++ + + +++
Bra011444.1-P 121 EKNELTRKFRGSEILELANFKNATIEDIANVHEKAYVLGLEKAMGEASDSGL-----IFIEGSGPTYATstTFQDSLIAAGAGMALVDSVVTASRN 211
346777888888899999999****************999998877766544.....457888887655115555677899988877776655443 PP
class-1.txt 123 .......iainwaGGlhhakkseasGfcyvnDivlailellkkh..krvlyididlhhGDgveeafyttdrvmtvsfhkygeeffPgtGdlsdvga 209
a+ hha + Gfc ++ +a + ++ h rv id+d+hhG+g ++af++ ++ +s h+ g +PgtG++sd+g+
Bra011444.1-P 212 sfdpptgFALIRP-PGHHAVPKGPMGFCVFGNVAIAARHAQRAHglTRVFIIDFDVHHGNGTNDAFSEDPDIFFLSTHQDGS--YPGTGKMSDIGK 304
1111111333333.349**********************99976448*******************************9998..9*********** PP
class-1.txt 210 ekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlp 287
+kg ++n+Pl g D +++ f+++i + +++f+P+ +++ G D+ D+l++ ++++ ++ + k +k+ +
Bra011444.1-P 305 GKGEGTTLNLPLPGGSGDIAMRTAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDIKQLAKE 382
************************************************************998887777777776543 PP

Protein Sequence
(Fasta)
MLFCLLLIYV STKGLMSFPC SQSFSVLEVT FLLFLGSGEV SGIRGFNLRN GLSLWRKHLV 60
KHNKGAYICC SFSTEKDPLL PSVQQLTDAR VIYSVSAALG HNKDSHPECS ARVPAIVTAL 120
EKNELTRKFR GSEILELANF KNATIEDIAN VHEKAYVLGL EKAMGEASDS GLIFIEGSGP 180
TYATSTTFQD SLIAAGAGMA LVDSVVTASR NSFDPPTGFA LIRPPGHHAV PKGPMGFCVF 240
GNVAIAARHA QRAHGLTRVF IIDFDVHHGN GTNDAFSEDP DIFFLSTHQD GSYPGTGKMS 300
DIGKGKGEGT TLNLPLPGGS GDIAMRTAFE EIIVPCVQRF KPDLILVSAG YDAHVLDPLA 360
NLQFTTGTYY SLAKDIKQLA KEVCGGRCVF FLEGGYNLES LSASVADSFR ALLGEESLAS 420
EFDNPAYLYD EPMRKVRDAI ERAKSIHCL 449
Nucleotide Sequence
(Fasta)
ATGCTGTTTT GTCTGCTCCT CATTTACGTT TCAACTAAAG GACTGATGAG CTTCCCATGT 60
TCTCAATCTT TCTCTGTACT GGAAGTGACA TTTTTATTGT TTTTAGGAAG TGGTGAAGTT 120
TCTGGGATCA GAGGTTTTAA TTTGCGGAAT GGATTGAGTT TGTGGAGAAA ACATCTTGTG 180
AAGCACAACA AGGGAGCTTA CATTTGTTGC TCATTTAGTA CAGAGAAGGA TCCTCTGTTA 240
CCTTCTGTCC AGCAGTTAAC CGATGCTCGT GTCATCTATA GTGTATCTGC TGCACTGGGT 300
CATAACAAGG ACTCGCATCC GGAATGCAGC GCAAGAGTTC CTGCTATTGT TACAGCTCTT 360
GAGAAGAATG AGCTCACTCG TAAGTTCCGT GGCTCGGAGA TTCTTGAACT TGCAAATTTC 420
AAGAATGCGA CTATAGAAGA CATTGCAAAT GTTCACGAAA AAGCTTATGT CTTAGGCCTG 480
GAGAAGGCAA TGGGTGAAGC TTCAGATTCA GGACTAATTT TCATTGAAGG TTCTGGACCA 540
ACATACGCCA CTTCAACGAC ATTCCAAGAT TCACTTATCG CAGCAGGAGC TGGAATGGCT 600
TTAGTTGATT CAGTGGTCAC AGCATCAAGA AACAGCTTCG ACCCTCCAAC TGGCTTTGCA 660
TTGATAAGAC CTCCAGGACA CCACGCTGTG CCAAAAGGCC CTATGGGTTT CTGCGTTTTT 720
GGTAATGTAG CAATCGCAGC TCGTCATGCT CAACGAGCAC ATGGTCTGAC ACGCGTCTTC 780
ATTATTGACT TCGATGTTCA CCATGGAAAT GGCACAAACG ATGCGTTTTC TGAGGATCCT 840
GATATATTCT TTTTGTCAAC GCATCAGGAT GGAAGCTATC CTGGAACAGG GAAGATGAGT 900
GACATAGGCA AAGGAAAAGG TGAAGGCACC ACCCTGAACT TACCTTTACC TGGAGGATCA 960
GGTGATATTG CAATGAGAAC TGCTTTTGAA GAAATCATTG TTCCATGTGT TCAACGTTTC 1020
AAGCCAGATC TTATTCTTGT TTCTGCCGGG TATGATGCTC ATGTCCTGGA TCCACTAGCG 1080
AATCTACAGT TCACAACCGG AACATACTAC TCATTGGCTA AAGATATAAA ACAATTAGCT 1140
AAAGAAGTAT GCGGAGGGCG TTGTGTGTTC TTCCTGGAAG GAGGATACAA TCTTGAGTCA 1200
CTTTCAGCAT CAGTAGCAGA CTCGTTTCGA GCTTTGCTTG GGGAAGAAAG CTTGGCATCA 1260
GAGTTCGATA ATCCAGCTTA CTTGTATGAT GAACCGATGA GGAAAGTGCG AGATGCAATT 1320
GAGAGAGCCA AAAGCATTCA TTGTTTATGA 1351
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bro-0004 Bo1g008110.1 Brassica oleracea 91 0.0 823
WERAM-Arl-0142 scaffold_700814.1 Arabidopsis lyrata 88 0.0 749
WERAM-Art-0110 AT4G33470.1 Arabidopsis thaliana 87 0.0 747
WERAM-Pot-0060 POPTR_0005s06520.1 Populus trichocarpa 73 7e-178 620
WERAM-Viv-0021 VIT_04s0044g01510.t01 Vitis vinifera 71 4e-173 605
WERAM-Met-0183 AET04758 Medicago truncatula 69 3e-172 602
WERAM-Glm-0050 GLYMA05G32600.1 Glycine max 73 1e-165 580
WERAM-Mua-0145 GSMUA_AchrUn_randomP00520_001 Musa acuminata 70 2e-162 569
WERAM-Sob-0054 Sb03g038950.1 Sorghum bicolor 68 2e-160 562
WERAM-Prp-0071 EMJ12704 Prunus persica 76 1e-159 560
WERAM-Brd-0117 BRADI4G40960.1 Brachypodium distachyon 68 1e-159 560
WERAM-Orb-0120 OBART12G04910.1 Oryza barthii 67 2e-159 559
WERAM-Orp-0110 OPUNC12G04860.1 Oryza punctata 68 2e-159 559
WERAM-Ors-0108 OS12T0182700-01 Oryza sativa 67 2e-159 559
WERAM-Tra-0217 Traes_5BS_F36388166.1 Triticum aestivum 66 2e-159 559
WERAM-Org-0113 ORGLA12G0047100.1 Oryza glaberrima 67 7e-159 557
WERAM-Ori-0128 BGIOSGA037104-PA Oryza indica 67 8e-159 557
WERAM-Orbr-0123 OB12G14780.1 Oryza brachyantha 67 8e-159 557
WERAM-Orni-0103 ONIVA09G16260.1 Oryza nivara 67 1e-158 556
WERAM-Zem-0142 GRMZM2G456473_P01 Zea mays 70 7e-158 554
WERAM-Lep-0114 LPERR12G04530.1 Leersia perrieri 66 8e-158 554
WERAM-Sei-0036 Si010171m Setaria italica 68 5e-157 551
WERAM-Orr-0120 ORUFI12G05690.1 Oryza rufipogon 64 1e-155 546
WERAM-Orgl-0115 OGLUM12G05720.1 Oryza glumaepatula 64 2e-155 545
WERAM-Php-0127 PP1S85_154V6.1 Physcomitrella patens 67 3e-155 545
WERAM-Orl-0008 KN538685.1_FGP052 Oryza longistaminata 64 3e-155 545
WERAM-Orm-0105 OMERI12G03370.1 Oryza meridionalis 61 4e-153 538
WERAM-Amt-0065 ERN18144 Amborella trichopoda 67 3e-147 519
WERAM-Tru-0036 TRIUR3_18154-P1 Triticum urartu 59 6e-143 504
WERAM-Sem-0047 EFJ16002 Selaginella moellendorffii 63 1e-128 457
WERAM-Sol-0006 Solyc01g009110.2.1 Solanum lycopersicum 79 4e-124 442
WERAM-Thc-0007 EOX92582 Theobroma cacao 81 5e-121 431
WERAM-Osl-0036 ABP01312 Ostreococcus lucimarinus 51 2e-97 353
WERAM-Chr-0006 EDP01653 Chlamydomonas reinhardtii 52 3e-53 206
WERAM-Aim-0036 ENSAMEP00000002564.1 Ailuropoda melanoleuca 35 3e-50 196
WERAM-Myl-0003 ENSMLUP00000000417.2 Myotis lucifugus 38 2e-49 194
WERAM-Eqc-0086 ENSECAP00000010704.1 Equus caballus 38 2e-49 194
WERAM-Caf-0004 ENSCAFP00000000979.4 Canis familiaris 37 2e-49 194
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 37 2e-49 194
WERAM-Tut-0141 ENSTTRP00000011664.1 Tursiops truncatus 38 6e-49 192
WERAM-Bot-0106 ENSBTAP00000014602.4 Bos taurus 38 1e-48 191
WERAM-Mup-0023 ENSMPUP00000002307.1 Mustela putorius furo 35 2e-48 190
WERAM-Chs-0051 ENSCSAP00000001305.1 Chlorocebus sabaeus 37 6e-48 189
WERAM-Gog-0159 ENSGGOP00000014095.2 Gorilla gorilla 36 7e-48 189
WERAM-Ere-0078 ENSEEUP00000006690.1 Erinaceus europaeus 34 7e-48 188
WERAM-Pat-0122 ENSPTRP00000025053.4 Pan troglodytes 36 8e-48 188
WERAM-Fec-0119 ENSFCAP00000011049.3 Felis catus 36 8e-48 188
WERAM-Hos-0058 ENSP00000216271.5 Homo sapiens 36 8e-48 188
WERAM-Cap-0164 ENSCPOP00000013386.2 Cavia porcellus 34 1e-47 188
WERAM-Nol-0005 ENSNLEP00000000692.2 Nomascus leucogenys 36 4e-47 186
WERAM-Mum-0213 ENSMUSP00000080832.5 Mus musculus 36 6e-47 185
WERAM-Cae-0060 F41H10.6b Caenorhabditis elegans 38 6e-47 185
WERAM-Paa-0009 ENSPANP00000013655.1 Papio anubis 37 7e-47 185
WERAM-Otg-0149 ENSOGAP00000012689.2 Otolemur garnettii 39 8e-47 185
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 32 1e-46 184
WERAM-Ict-0132 ENSSTOP00000013675.2 Ictidomys tridecemlineatus 34 1e-46 184
WERAM-Sus-0012 ENSSSCP00000001039.2 Sus scrofa 35 2e-46 183
WERAM-Sah-0095 ENSSHAP00000011018.1 Sarcophilus harrisii 34 4e-46 182
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 35 7e-46 182
WERAM-Ten-0061 ENSTNIP00000000291.1 Tetraodon nigroviridis 33 7e-46 182
WERAM-Tar-0145 ENSTRUP00000031264.1 Takifugu rubripes 34 3e-45 179
WERAM-Cag-0018 CAG60803 Candida glabrata 34 7e-45 179
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 35 1e-44 178
WERAM-Anc-0012 ENSACAP00000019114.1 Anolis carolinensis 35 1e-44 178
WERAM-Sac-0037 YNL021W Saccharomyces cerevisiae 33 1e-44 177
WERAM-Gaa-0079 ENSGACP00000010554.1 Gasterosteus aculeatus 32 1e-44 177
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 35 1e-44 177
WERAM-Lac-0157 ENSLACP00000018610.1 Latimeria chalumnae 34 2e-44 177
WERAM-Orn-0108 ENSONIP00000011544.1 Oreochromis niloticus 33 2e-44 177
WERAM-Ect-0100 ENSETEP00000011415.1 Echinops telfairi 42 3e-44 177
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 35 3e-44 176
WERAM-Pof-0042 ENSPFOP00000003781.2 Poecilia formosa 33 3e-44 176
WERAM-Loa-0107 ENSLAFP00000009167.2 Loxodonta africana 35 3e-44 176
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 34 3e-44 176
WERAM-Ova-0212 ENSOARP00000021243.1 Ovis aries 37 3e-44 176
WERAM-Xim-0050 ENSXMAP00000004607.1 Xiphophorus maculatus 32 3e-44 176
WERAM-Ran-0135 ENSRNOP00000027622.5 Rattus norvegicus 34 4e-44 176
WERAM-Orc-0191 ENSOCUP00000020861.2 Oryctolagus cuniculus 36 5e-44 176
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 35 8e-44 175
WERAM-Asm-0146 ENSAMXP00000013789.1 Astyanax mexicanus 34 8e-44 175
WERAM-Mae-0029 ENSMEUP00000002095.1 Macropus eugenii 35 9e-44 175
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 34 1e-43 174
WERAM-Leo-0108 ENSLOCP00000014009.1 Lepisosteus oculatus 34 1e-43 174
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 34 2e-43 174
WERAM-Kop-0012 CAY68916 Komagataella pastoris 33 3e-43 173
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 34 3e-43 173
WERAM-Pes-0174 ENSPSIP00000020522.1 Pelodiscus sinensis 34 3e-43 173
WERAM-Caa-0034 KGT64501 Candida albicans 32 3e-43 173
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 34 3e-43 173
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 34 3e-43 173
WERAM-Orla-0013 ENSORLP00000001341.1 Oryzias latipes 33 4e-43 172
WERAM-Pug-0031 EFP89333 Puccinia graminis 32 5e-43 172
WERAM-Caj-0009 ENSCJAP00000001947.2 Callithrix jacchus 33 8e-43 172
WERAM-Mam-0095 ENSMMUP00000014626.2 Macaca mulatta 33 8e-43 172
WERAM-Poa-0162 ENSPPYP00000019901.2 Pongo abelii 33 9e-43 171
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 33 1e-42 171
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 37 2e-42 171
WERAM-Asg-0010 AAS51704 Ashbya gossypii 34 3e-42 170
WERAM-Coi-0028 EAS30926 Coccidioides immitis 34 3e-42 170
WERAM-Usm-0012 UM02102P0 Ustilago maydis 31 3e-42 170
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 34 4e-42 169
WERAM-Gam-0051 ENSGMOP00000005244.1 Gadus morhua 34 4e-42 169
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 34 6e-42 169
WERAM-Map-0033 MAPG_10880T0 Magnaporthe poae 33 6e-42 169
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 33 6e-42 169
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 36 7e-42 169
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 34 9e-42 168
WERAM-Mao-0002 MGG_01076T0 Magnaporthe oryzae 35 1e-41 167
WERAM-Nec-0012 EFNCRP00000001681 Neurospora crassa 33 3e-41 167
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 34 3e-41 166
WERAM-Chg-0033 EAQ86725 Chaetomium globosum 33 4e-41 166
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 34 8e-41 165
Created Date 25-Jun-2016