WERAM Information


Tag Content
WERAM ID WERAM-Aim-0143
Ensembl Protein ID ENSAMEP00000013629.1
Gene Name COL2A1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSAMEG00000012885.1 ENSAMET00000014197.1 ENSAMEP00000013629.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 1.40e-146 487.9 522 863
HDAC Class-I 9.70e-29 101 541 841
Organism Ailuropoda melanoleuca
Domain Profile
  HDAC Class-II

           class-2.txt   2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeeles...... 84 
+glvyd+ mlkhq+ ++++++hpE+++Riq+i+srlqe+gl++++e+l++rka++eelq+vHse+hv l++t+ +l++ +l++
ENSAMEP00000013629.1 522 TGLVYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTN-PLSRLKLDNgklagl 609
79***********************************************************************.*************** PP
class-2.txt 85 .............ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqkl 160
++vd+d+i++e +s++aar+a+G+v++l++kv++ elkngfavvRPPGHHa++stamGFC+fn+va+a+++lqq+
ENSAMEP00000013629.1 610 laqrmfvmlpcggVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQG 698
***************************************************************************************** PP
class-2.txt 161 kvkkilivDwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawnggl...mgdaeylaafrevvl 246
k++kili+DwDvHhGnGtq++fy+dp vly+SlHR+d+g+ffp gsga+devg g+gegfnvNvaw ggl mgd eylaafr+vv+
ENSAMEP00000013629.1 699 KASKILIMDWDVHHGNGTQQTFYQDPGVLYISLHRHDDGNFFP--GSGAADEVGAGSGEGFNVNVAWAGGLdppMGDPEYLAAFRTVVM 785
*******************************************..******************************************** PP
class-2.txt 247 piakeFkPdlvlvsaGfDaaeg..dplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLlg 322
pia+eF+PdlvlvsaGfDaaeg +plgg++v+akc++++t+ql++lagg vvl+lEGG++l+ai++a+ea+v aLlg
ENSAMEP00000013629.1 786 PIAREFSPDLVLVSAGFDAAEGhpAPLGGYHVSAKCFGYMTQQLMSLAGGAVVLALEGGHDLTAICDASEACVAALLG 863
**********************999***************************************************96 PP

  HDAC Class-I

           class-1.txt  18 qkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyi.....eflkkvepenae.......elskelkkfnvgedc.P 93 
++hp r++ + + + + gl + e ++ +kas eel+++hse ++ + l++ + +n + ++ l +vg d+
ENSAMEP00000013629.1 541 SRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVllygtNPLSRLKLDNGKlagllaqRMFVMLPCGGVGVDTdT 629
46777777888888888888888888888888888888888888877633333456777777766655443322222233345555423 PP
class-1.txt 94 vfdglfey..cqlitGasleaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgve 176
+ ++l++ ++ +G+ + a k+ ++e + a+ G hha +s a Gfc+ n + +a +l++ k +++l +d d+hhG+g +
ENSAMEP00000013629.1 630 IWNELHSSnaARWAAGSVTDLAFKVASRELKngFAVVRPPG-HHADHSTAMGFCFFNSVAIACRQLQQqgKASKILIMDWDVHHGNGTQ 717
66777643113445555566777887776551145555544.************************9977899**************** PP
class-1.txt 177 eafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlkdgid....DesyekifksviskvieafePeavvlqcGaDsla 260
++fy+ v+ +s+h++++ +ffPg+G ++vga++g + vnv g+d D +y + f++v+ ++ + f+P+ v++ G D+
ENSAMEP00000013629.1 718 QTFYQDPGVLYISLHRHDDgNFFPGSGAADEVGAGSGEGFNVNVAWAGGLDppmgDPEYLAAFRTVVMPIAREFSPDLVLVSAGFDAAE 806
*****************8746***********************9888876555599******************************99 PP
class-1.txt 261 gD..rlgefnlsikghaecvkfvksf..nlpllvl 291
g +lg +++s k ++ + + + s + +l l
ENSAMEP00000013629.1 807 GHpaPLGGYHVSAKCFGYMTQQLMSLagGAVVLAL 841
8633699****999999988877777433333334 PP

Protein Sequence
(Fasta)
QLQVGQQERE LRQLLNKDKS KRSAVASSVV KQKLAEVILK KQQAALERTV HPNSPSIPYR 60
TLEPLETEGA ARSMLSSFLP PVPSLPSDPP EHFPLRKTVS EPNLKLRYKP KKSLERRKNP 120
LLRKESAPPS LRRRPAETLG DSSPSSSSTP ASGCSSPNDS EQGPNPVLGS EPLPCSPWQA 180
LLGQRLRLQE TSLAPFALPT VSLLPAITLG LPAPARPTSP QADADRRTHP TLGPRGPVLG 240
SPHAPLFLPH GLEPEAGGPL PSRLQPILLL DPSVSHAPLL TGEFHGFSRG GAWSLHPAKG 300
QVRLHRPLSR TRSEPLPPSA TAPPPLGPLQ PRLERLKPHV QLIKPASQHG LSVGVSPPQR 360
PAKPSEKPRL RQIPSAEDLE TDGGGVGPVG DDGLEHRESS HGQHEARGPV PLQQHQVRRH 420
PRSWFPSPWA ATDGAESRDL ETEAPCVPQV FLWEQQRLAG RLPRGGTGDS VLLPLAQGSH 480
RPLSRAQSSP AAPASLPTPE PASQARVLPS SETPARTLPF TTGLVYDSVM LKHQCSCGDN 540
SRHPEHAGRI QSIWSRLQER GLRSQCECLR GRKASLEELQ SVHSERHVLL YGTNPLSRLK 600
LDNGKLAGLL AQRMFVMLPC GGVGVDTDTI WNELHSSNAA RWAAGSVTDL AFKVASRELK 660
NGFAVVRPPG HHADHSTAMG FCFFNSVAIA CRQLQQQGKA SKILIMDWDV HHGNGTQQTF 720
YQDPGVLYIS LHRHDDGNFF PGSGAADEVG AGSGEGFNVN VAWAGGLDPP MGDPEYLAAF 780
RTVVMPIARE FSPDLVLVSA GFDAAEGHPA PLGGYHVSAK CFGYMTQQLM SLAGGAVVLA 840
LEGGHDLTAI CDASEACVAA LLGNKVDPLS EEGWKQKPNL NAIRSLEAVI RVHSKYWGCM 900
QRLASRPDSW APRAPGADTE EVEAVTALAS LSVGILAEER PSEQLVEEEE PM 952
Nucleotide Sequence
(Fasta)
CAGCTGCAGG TGGGGCAGCA GGAGCGGGAG CTGCGGCAGC TTCTCAACAA GGACAAGAGC 60
AAGCGAAGTG CCGTAGCCAG CAGCGTGGTC AAGCAGAAGC TGGCAGAGGT GATTCTAAAG 120
AAACAGCAGG CAGCCCTAGA GAGAACAGTC CACCCCAATA GCCCCAGCAT TCCCTACAGA 180
ACCCTCGAGC CCTTGGAGAC GGAAGGAGCT GCTCGCTCTA TGCTCAGCAG CTTTCTGCCT 240
CCTGTTCCCA GCCTGCCCAG TGACCCCCCA GAACACTTCC CTCTCCGAAA GACAGTCTCT 300
GAGCCCAACC TGAAGCTGCG TTACAAGCCC AAGAAGTCCC TGGAGCGGAG GAAGAATCCG 360
CTGCTCAGAA AGGAGAGCGC CCCGCCCAGT CTCCGGCGGC GGCCCGCGGA GACCCTTGGT 420
GACTCCTCCC CGAGTAGCAG CAGCACGCCA GCCTCGGGCT GCAGTTCCCC TAATGACAGC 480
GAGCAGGGCC CCAACCCCGT CCTGGGCTCC GAGCCCCTGC CCTGCTCCCC ATGGCAGGCG 540
CTCTTGGGCC AGCGGCTGCG GCTGCAGGAG ACCTCTCTGG CCCCGTTCGC CTTGCCGACT 600
GTGTCCTTGC TGCCCGCAAT CACGCTGGGG CTACCTGCCC CTGCCAGGCC TACCTCTCCC 660
CAGGCTGATG CTGACCGCAG GACCCATCCG ACTCTGGGCC CTCGGGGGCC GGTCCTGGGG 720
AGCCCCCATG CTCCCCTCTT CCTGCCCCAT GGCCTGGAGC CTGAGGCTGG AGGCCCCTTG 780
CCCTCTCGAC TACAGCCCAT CCTCCTCTTG GATCCCTCAG TTTCTCACGC CCCTCTGCTG 840
ACTGGTGAGT TCCACGGTTT CTCCAGGGGA GGGGCTTGGT CCCTGCATCC TGCTAAGGGC 900
CAAGTTCGGC TCCACCGGCC ACTAAGCCGG ACCCGCTCAG AGCCCCTGCC CCCAAGCGCC 960
ACCGCCCCCC CACCGCTGGG CCCCCTGCAG CCCCGCCTGG AACGGCTCAA ACCTCACGTC 1020
CAGCTGATCA AGCCTGCCTC CCAGCATGGC CTCTCAGTGG GCGTCTCCCC TCCCCAGAGG 1080
CCAGCCAAGC CAAGTGAGAA GCCCCGACTG CGGCAGATAC CCTCCGCTGA GGACCTAGAG 1140
ACAGATGGCG GGGGTGTGGG GCCAGTGGGG GATGACGGCC TGGAACACAG GGAGTCAAGC 1200
CACGGGCAGC ATGAGGCCAG AGGCCCTGTT CCTCTCCAGC AGCACCAGGT ACGGCGGCAC 1260
CCACGTTCCT GGTTTCCAAG TCCTTGGGCA GCAACAGATG GAGCAGAATC CCGAGACCTG 1320
GAGACTGAGG CCCCCTGTGT CCCTCAGGTG TTCCTCTGGG AGCAGCAGCG ACTGGCTGGG 1380
CGGCTCCCCC GGGGAGGAAC TGGGGACTCT GTGCTGCTTC CCCTGGCCCA GGGCAGTCAC 1440
CGGCCCCTAT CCAGGGCTCA GTCGTCCCCA GCCGCACCTG CCTCACTGCC AACTCCAGAG 1500
CCCGCCAGTC AGGCCCGTGT CCTGCCCAGC TCGGAGACCC CTGCCAGGAC CCTGCCATTC 1560
ACCACAGGGC TGGTCTATGA CTCGGTCATG CTGAAGCACC AGTGCTCCTG CGGGGACAAC 1620
AGCCGGCACC CCGAGCACGC GGGCCGCATC CAGAGCATCT GGTCCCGGCT GCAGGAGCGG 1680
GGGCTCCGGA GCCAGTGTGA GTGTCTCCGG GGCCGGAAGG CCTCCCTGGA GGAGCTGCAG 1740
TCCGTGCACT CCGAGCGGCA TGTGCTCCTC TATGGCACCA ACCCGCTCAG CCGCCTCAAA 1800
CTGGACAACG GGAAGCTGGC AGGGCTCCTG GCACAGCGGA TGTTTGTGAT GCTGCCCTGT 1860
GGTGGGGTAG GGGTGGATAC CGACACCATC TGGAACGAGC TGCACTCCTC CAATGCAGCC 1920
CGCTGGGCCG CCGGCAGCGT CACCGACCTC GCCTTCAAAG TAGCTTCCCG TGAGCTAAAG 1980
AATGGTTTTG CTGTGGTTCG GCCCCCAGGA CACCATGCAG ACCATTCCAC AGCCATGGGC 2040
TTCTGCTTCT TCAACTCGGT GGCCATCGCC TGCCGGCAGC TTCAACAGCA GGGCAAGGCC 2100
AGCAAGATCC TCATCATGGA CTGGGATGTT CACCACGGCA ACGGCACCCA GCAGACCTTC 2160
TACCAGGACC CCGGTGTGCT GTACATCTCC CTGCATCGCC ACGACGACGG CAACTTCTTC 2220
CCCGGCAGTG GGGCCGCGGA TGAGGTGGGA GCTGGTAGCG GTGAGGGTTT CAACGTCAAC 2280
GTGGCCTGGG CGGGAGGTCT GGACCCTCCG ATGGGGGATC CTGAGTACCT GGCCGCCTTC 2340
AGGACGGTCG TGATGCCCAT CGCCAGAGAG TTCTCTCCGG ACCTGGTCCT GGTGTCAGCT 2400
GGGTTTGATG CTGCCGAGGG TCACCCAGCC CCGCTGGGTG GCTACCATGT TTCCGCTAAA 2460
TGTTTCGGGT ACATGACGCA GCAGCTGATG AGCTTGGCGG GAGGTGCCGT GGTGCTGGCC 2520
TTGGAAGGTG GCCATGACCT CACAGCCATC TGTGACGCTT CTGAGGCCTG CGTGGCTGCT 2580
CTTCTGGGGA ACAAGGTGGA CCCTCTCTCA GAAGAGGGCT GGAAACAGAA ACCCAACCTC 2640
AACGCCATCC GCTCTTTGGA AGCCGTGATC CGGGTGCACA GTAAATACTG GGGCTGCATG 2700
CAGCGCCTGG CTTCCCGTCC AGACTCCTGG GCGCCCAGGG CGCCAGGCGC CGACACGGAA 2760
GAAGTGGAGG CGGTGACGGC GTTGGCATCC CTCTCCGTGG GCATCCTGGC TGAAGAGCGG 2820
CCCTCGGAAC AGCTGGTGGA GGAGGAAGAA CCCATG 2857
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Fec-0138 ENSFCAP00000012982.3 Felis catus 89 0.0 1404
WERAM-Mup-0003 ENSMPUP00000000413.1 Mustela putorius furo 89 0.0 1402
WERAM-Caf-0101 ENSCAFP00000013479.3 Canis familiaris 89 0.0 1400
WERAM-Eqc-0166 ENSECAP00000018277.1 Equus caballus 88 0.0 1379
WERAM-Paa-0072 ENSPANP00000008610.1 Papio anubis 87 0.0 1362
WERAM-Bot-0201 ENSBTAP00000038136.4 Bos taurus 87 0.0 1360
WERAM-Gog-0184 ENSGGOP00000016066.2 Gorilla gorilla 86 0.0 1358
WERAM-Hos-0021 ENSP00000080059.7 Homo sapiens 86 0.0 1357
WERAM-Pat-0040 ENSPTRP00000008320.5 Pan troglodytes 86 0.0 1348
WERAM-Tut-0143 ENSTTRP00000011934.1 Tursiops truncatus 87 0.0 1345
WERAM-Nol-0194 ENSNLEP00000021748.1 Nomascus leucogenys 85 0.0 1327
WERAM-Ict-0024 ENSSTOP00000001667.2 Ictidomys tridecemlineatus 85 0.0 1326
WERAM-Myl-0009 ENSMLUP00000000824.2 Myotis lucifugus 82 0.0 1325
WERAM-Cap-0074 ENSCPOP00000005427.2 Cavia porcellus 83 0.0 1323
WERAM-Ptv-0096 ENSPVAP00000008849.1 Pteropus vampyrus 83 0.0 1316
WERAM-Loa-0049 ENSLAFP00000003605.3 Loxodonta africana 86 0.0 1316
WERAM-Prc-0083 ENSPCAP00000007167.1 Procavia capensis 84 0.0 1309
WERAM-Ran-0240 ENSRNOP00000073744.1 Rattus norvegicus 83 0.0 1303
WERAM-Chs-0077 ENSCSAP00000002870.1 Chlorocebus sabaeus 83 0.0 1285
WERAM-Dan-0112 ENSDNOP00000014271.3 Dasypus novemcinctus 82 0.0 1275
WERAM-Caj-0152 ENSCJAP00000019002.2 Callithrix jacchus 85 0.0 1230
WERAM-Mum-0046 ENSMUSP00000085744.5 Mus musculus 79 0.0 1230
WERAM-Mim-0087 ENSMICP00000008193.1 Microcebus murinus 80 0.0 1223
WERAM-Otg-0067 ENSOGAP00000004897.2 Otolemur garnettii 83 0.0 1202
WERAM-Ova-0207 ENSOARP00000020819.1 Ovis aries 77 0.0 1186
WERAM-Sah-0025 ENSSHAP00000002837.1 Sarcophilus harrisii 76 0.0 1181
WERAM-Poa-0042 ENSPPYP00000005074.1 Pongo abelii 84 0.0 1137
WERAM-Mae-0085 ENSMEUP00000008564.1 Macropus eugenii 74 0.0 1118
WERAM-Ect-0068 ENSETEP00000007698.1 Echinops telfairi 74 0.0 1102
WERAM-Ere-0008 ENSEEUP00000000313.1 Erinaceus europaeus 75 0.0 1097
WERAM-Ocp-0101 ENSOPRP00000009320.1 Ochotona princeps 71 0.0 1055
WERAM-Meg-0108 ENSMGAP00000010913.2 Meleagris gallopavo 65 0.0 974
WERAM-Anc-0160 ENSACAP00000015012.3 Anolis carolinensis 63 0.0 953
WERAM-Anp-0061 ENSAPLP00000006782.1 Anas platyrhynchos 64 0.0 940
WERAM-Dio-0162 ENSDORP00000015305.1 Dipodomys ordii 74 0.0 925
WERAM-Gaga-0067 ENSGALP00000010190.4 Gallus gallus 63 0.0 924
WERAM-Pes-0124 ENSPSIP00000014863.1 Pelodiscus sinensis 63 0.0 922
WERAM-Lac-0191 ENSLACP00000021749.1 Latimeria chalumnae 58 0.0 831
WERAM-Mam-0226 ENSMMUP00000028518.2 Macaca mulatta 97 0.0 829
WERAM-Fia-0129 ENSFALP00000010805.1 Ficedula albicollis 58 0.0 823
WERAM-Orn-0108 ENSONIP00000011544.1 Oreochromis niloticus 54 0.0 731
WERAM-Pof-0217 ENSPFOP00000017514.2 Poecilia formosa 52 0.0 730
WERAM-Ten-0061 ENSTNIP00000000291.1 Tetraodon nigroviridis 54 0.0 728
WERAM-Xim-0050 ENSXMAP00000004607.1 Xiphophorus maculatus 51 0.0 719
WERAM-Tar-0145 ENSTRUP00000031264.1 Takifugu rubripes 53 0.0 710
WERAM-Leo-0044 ENSLOCP00000006280.1 Lepisosteus oculatus 54 0.0 709
WERAM-Orla-0013 ENSORLP00000001341.1 Oryzias latipes 52 0.0 708
WERAM-Orc-0187 ENSOCUP00000019525.1 Oryctolagus cuniculus 94 0.0 704
WERAM-Xet-0073 ENSXETP00000023344.3 Xenopus tropicalis 76 0.0 692
WERAM-Tag-0054 ENSTGUP00000003859.1 Taeniopygia guttata 63 0.0 685
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 64 9e-180 628
WERAM-Sus-0169 ENSSSCP00000025173.1 Sus scrofa 67 2e-179 627
WERAM-Dar-0240 ENSDARP00000132042.1 Danio rerio 73 2e-177 620
WERAM-Tub-0137 ENSTBEP00000014805.1 Tupaia belangeri 95 1e-176 618
WERAM-Gaa-0079 ENSGACP00000010554.1 Gasterosteus aculeatus 71 2e-176 617
WERAM-Asm-0202 ENSAMXP00000018862.1 Astyanax mexicanus 64 7e-176 615
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 69 1e-173 608
WERAM-Mod-0095 ENSMODP00000032765.2 Monodelphis domestica 65 1e-166 584
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 68 2e-163 573
WERAM-Gam-0063 ENSGMOP00000006368.1 Gadus morhua 64 1e-150 531
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 62 8e-149 525
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 56 5e-140 496
WERAM-Vip-0084 ENSVPAP00000007862.1 Vicugna pacos 67 1e-139 495
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 50 3e-115 414
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 52 1e-112 405
WERAM-Chh-0086 ENSCHOP00000009630.1 Choloepus hoffmanni 63 4e-112 403
WERAM-Cis-0060 ENSCSAVP00000013851.1 Ciona savignyi 52 5e-78 290
WERAM-Sem-0022 EFJ08599 Selaginella moellendorffii 43 3e-72 271
WERAM-Brr-0181 Bra035942.1-P Brassica rapa 43 8e-72 270
WERAM-Bro-0168 Bo9g014470.1 Brassica oleracea 44 1e-71 269
Created Date 25-Jun-2016