| Tag |
Content |
| WERAM ID |
WERAM-Pot-0112 |
| Ensembl Protein ID |
POPTR_0009s17200.1 |
| Gene Name |
POPTR_0009s17200g |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
5.80e-165 |
549.6 |
18 |
329 |
|
| Organism |
Populus trichocarpa |
| Domain Profile |
HDAC Class-I
class-1.txt 1 kkvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvged 91
+kv+y+yd++vg+y+ygq+hpmkp+r+++th L+ +ygl ++++++kp a+ ++l++fh+++y++fl++++pe++++ ++lk+fnvged
POPTR_0009s17200.1 18 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGED 108
589**************************************************************************************** PP
class-1.txt 92 cPvfdglfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlhhGDgveeafytt 182
cPvfdgl+++cq+++G+s+ +a kLn++ +dia+nwaGGlhhakk+easGfcyvnDivlailellk h+rvly+did+hhGDgveeafytt
POPTR_0009s17200.1 109 CPVFDGLYSFCQTYAGGSVGGAVKLNHNLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVLYVDIDIHHGDGVEEAFYTT 199
******************************************************************************************* PP
class-1.txt 183 drvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikg 273
drvmtvsfhk+g+ +fPgtGd++d+g kgkyy++nvPl+dgidDesy+ +fk++i kv+e+f+P avvlqcGaDsl+gDrlg+fnlsikg
POPTR_0009s17200.1 200 DRVMTVSFHKFGD-YFPGTGDIRDIGFSKGKYYSLNVPLDDGIDDESYHFLFKPLIGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKG 289
*************.***************************************************************************** PP
class-1.txt 274 haecvkfvksfnlpllvlGGGGYtlrnvaRcwtyetavvl 313
haecvk+++sfn+pll+lGGGGYt+rnvaRcw+yet+v+l
POPTR_0009s17200.1 290 HAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVAL 329
*************************************986 PP
|
Protein Sequence
(Fasta) | MDTGGNSLPS AAPDGVKRKV CYFYDPEVGN YYYGQGHPMK PHRIRMTHAL LAHYGLLQHM 60
QVLKPFPARD RDLCRFHADD YVSFLRSITP ETQQDQLRQL KRFNVGEDCP VFDGLYSFCQ 120
TYAGGSVGGA VKLNHNLCDI AVNWAGGLHH AKKCEASGFC YVNDIVLAIL ELLKVHERVL 180
YVDIDIHHGD GVEEAFYTTD RVMTVSFHKF GDYFPGTGDI RDIGFSKGKY YSLNVPLDDG 240
IDDESYHFLF KPLIGKVMEV FKPGAVVLQC GADSLSGDRL GCFNLSIKGH AECVKYMRSF 300
NVPLLLLGGG GYTIRNVARC WCYETGVALG IEVDDKMPQH EYYEYFGPDY TLHVAPSNME 360
NKNSFQLLEE IRSKLLDNLS KLQHAPSVQF QERPPDTELL EAEEDQDDAD ERWDPDSDMD 420
VDDERKPLPS RVKREIVEAE PKELEGQKGS SEYARGFDAA IDENASGKAL DAGPMQIDEP 480
GVRVEQENVN KHSDQLYSK 499Protein Fasta Sequence
>POPTR_0009s17200.1|Class-I|Populus trichocarpa
MDTGGNSLPSAAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHNLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGFSKGKYYSLNVPLDDGIDDESYHFLFKPLIGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSFQLLEEIRSKLLDNLSKLQHAPSVQFQERPPDTELLEAEEDQDDADERWDPDSDMDVDDERKPLPSRVKREIVEAEPKELEGQKGSSEYARGFDAAIDENASGKALDAGPMQIDEPGVRVEQENVNKHSDQLYSK |
Nucleotide Sequence
(Fasta) | AGGCAGCTCG ATTGAAAGTT AGAAGCACGA AGAGCAGATG AGAAGCAGCG TTACATTATA 60
TGCTTTTTTT GTCTTCTGAA AATTAAAGGG GAGGTGGTTC TTCTCCGTTG CAGCAGAAAG 120
ACCCTCAAGT TTTCCCTTTC CTATTTTAAG CTGGCATTAA ATTCAATTCA AGGTTGTTTC 180
TTTTGATCAA GATGCAGCAG CAGCAGCACC AACAAGTATA CAGATCCATC TATCCATAAT 240
AATTAATAAC TAACAATGGA CACTGGTGGC AATTCTCTTC CGTCTGCTGC TCCTGATGGG 300
GTTAAGAGAA AGGTTTGCTA TTTCTACGAT CCAGAAGTCG GCAATTACTA TTATGGCCAG 360
GGTCACCCCA TGAAGCCCCA TCGCATTCGA ATGACCCATG CTCTCCTTGC CCACTACGGC 420
TTGCTTCAGC ACATGCAGGT CCTCAAGCCC TTTCCTGCTC GTGACCGCGA TCTTTGCCGC 480
TTCCATGCTG ATGATTATGT CTCTTTCCTC CGCAGCATCA CCCCTGAGAC CCAGCAGGAC 540
CAGCTCAGGC AGCTCAAGCG CTTTAACGTT GGCGAAGATT GTCCTGTCTT TGATGGCCTC 600
TACTCCTTCT GCCAGACTTA CGCTGGTGGC TCTGTTGGGG GTGCCGTCAA GTTAAATCAC 660
AACCTCTGTG ACATTGCTGT CAATTGGGCT GGTGGCCTCC ATCATGCTAA GAAGTGTGAA 720
GCTTCTGGTT TTTGCTATGT TAATGACATC GTGCTTGCAA TCTTGGAGCT TCTTAAAGTG 780
CATGAGCGTG TTCTGTATGT GGATATTGAT ATTCACCATG GTGATGGTGT GGAGGAAGCA 840
TTTTACACCA CTGATAGAGT CATGACTGTT TCATTCCATA AATTTGGAGA TTACTTTCCC 900
GGCACAGGAG ATATACGTGA CATTGGATTT TCAAAAGGAA AATACTACTC TCTCAATGTT 960
CCATTGGATG ATGGAATTGA CGATGAGAGC TATCATTTCT TGTTTAAACC ACTAATTGGA 1020
AAAGTAATGG AAGTTTTTAA ACCAGGTGCT GTGGTTCTCC AATGTGGTGC TGACTCGTTA 1080
TCTGGGGATA GATTAGGATG CTTCAATCTT TCTATCAAGG GCCATGCAGA GTGCGTTAAA 1140
TATATGAGAT CTTTCAATGT GCCATTATTG CTATTGGGTG GTGGTGGCTA CACCATTCGA 1200
AATGTTGCTC GCTGCTGGTG CTACGAGACT GGAGTTGCAC TTGGAATTGA AGTTGATGAT 1260
AAGATGCCAC AGCATGAGTA TTATGAGTAC TTTGGTCCAG ATTATACTCT TCATGTTGCC 1320
CCTAGCAACA TGGAAAATAA GAATTCCTTC CAGTTACTTG AGGAAATACG GTCTAAGCTC 1380
CTTGATAATC TTTCAAAGCT TCAGCATGCA CCGAGTGTCC AATTTCAGGA AAGACCACCT 1440
GATACTGAGC TTCTGGAGGC AGAAGAAGAT CAGGATGATG CAGATGAGAG ATGGGATCCA 1500
GATTCTGATA TGGATGTTGA TGATGAACGA AAGCCATTAC CAAGCAGAGT GAAGAGAGAA 1560
ATAGTTGAAG CTGAGCCAAA GGAGTTGGAG GGTCAGAAAG GAAGTTCTGA GTATGCTAGA 1620
GGCTTTGATG CAGCAATAGA CGAAAATGCA AGTGGAAAGG CTTTGGATGC TGGTCCTATG 1680
CAAATTGATG AGCCAGGTGT CAGAGTTGAA CAGGAAAATG TGAACAAGCA TTCTGATCAG 1740
TTGTACTCCA AGTAGGGGCT AGGTGTGACA ATTGAACAGG AAAATGTGAA CAAGCCTTCT 1800
AATCAAATGT AATCCCAAGT AAAAAGCACC ATTCCACAAA CTATTCCAAG TTTGTGTATG 1860
GTTTTATCGA GTTAAGCATA TATGATGAGT ACAAACTCGG ACAGCCCATG ATAACCTGAA 1920
TGGTTTCGTC TCTAATTAAG TTTTTTTTTT ATTAAATTTT TTTTATTGAG GCATTTTGTA 1980
TGGGATATTG TGGAAACTTG GAATTGAAGT TC
2013Nucleotide Fasta Sequence
>POPTR_0009s17200.1|Class-I|Populus trichocarpa
AGGCAGCTCGATTGAAAGTTAGAAGCACGAAGAGCAGATGAGAAGCAGCGTTACATTATATGCTTTTTTTGTCTTCTGAAAATTAAAGGGGAGGTGGTTCTTCTCCGTTGCAGCAGAAAGACCCTCAAGTTTTCCCTTTCCTATTTTAAGCTGGCATTAAATTCAATTCAAGGTTGTTTCTTTTGATCAAGATGCAGCAGCAGCAGCACCAACAAGTATACAGATCCATCTATCCATAATAATTAATAACTAACAATGGACACTGGTGGCAATTCTCTTCCGTCTGCTGCTCCTGATGGGGTTAAGAGAAAGGTTTGCTATTTCTACGATCCAGAAGTCGGCAATTACTATTATGGCCAGGGTCACCCCATGAAGCCCCATCGCATTCGAATGACCCATGCTCTCCTTGCCCACTACGGCTTGCTTCAGCACATGCAGGTCCTCAAGCCCTTTCCTGCTCGTGACCGCGATCTTTGCCGCTTCCATGCTGATGATTATGTCTCTTTCCTCCGCAGCATCACCCCTGAGACCCAGCAGGACCAGCTCAGGCAGCTCAAGCGCTTTAACGTTGGCGAAGATTGTCCTGTCTTTGATGGCCTCTACTCCTTCTGCCAGACTTACGCTGGTGGCTCTGTTGGGGGTGCCGTCAAGTTAAATCACAACCTCTGTGACATTGCTGTCAATTGGGCTGGTGGCCTCCATCATGCTAAGAAGTGTGAAGCTTCTGGTTTTTGCTATGTTAATGACATCGTGCTTGCAATCTTGGAGCTTCTTAAAGTGCATGAGCGTGTTCTGTATGTGGATATTGATATTCACCATGGTGATGGTGTGGAGGAAGCATTTTACACCACTGATAGAGTCATGACTGTTTCATTCCATAAATTTGGAGATTACTTTCCCGGCACAGGAGATATACGTGACATTGGATTTTCAAAAGGAAAATACTACTCTCTCAATGTTCCATTGGATGATGGAATTGACGATGAGAGCTATCATTTCTTGTTTAAACCACTAATTGGAAAAGTAATGGAAGTTTTTAAACCAGGTGCTGTGGTTCTCCAATGTGGTGCTGACTCGTTATCTGGGGATAGATTAGGATGCTTCAATCTTTCTATCAAGGGCCATGCAGAGTGCGTTAAATATATGAGATCTTTCAATGTGCCATTATTGCTATTGGGTGGTGGTGGCTACACCATTCGAAATGTTGCTCGCTGCTGGTGCTACGAGACTGGAGTTGCACTTGGAATTGAAGTTGATGATAAGATGCCACAGCATGAGTATTATGAGTACTTTGGTCCAGATTATACTCTTCATGTTGCCCCTAGCAACATGGAAAATAAGAATTCCTTCCAGTTACTTGAGGAAATACGGTCTAAGCTCCTTGATAATCTTTCAAAGCTTCAGCATGCACCGAGTGTCCAATTTCAGGAAAGACCACCTGATACTGAGCTTCTGGAGGCAGAAGAAGATCAGGATGATGCAGATGAGAGATGGGATCCAGATTCTGATATGGATGTTGATGATGAACGAAAGCCATTACCAAGCAGAGTGAAGAGAGAAATAGTTGAAGCTGAGCCAAAGGAGTTGGAGGGTCAGAAAGGAAGTTCTGAGTATGCTAGAGGCTTTGATGCAGCAATAGACGAAAATGCAAGTGGAAAGGCTTTGGATGCTGGTCCTATGCAAATTGATGAGCCAGGTGTCAGAGTTGAACAGGAAAATGTGAACAAGCATTCTGATCAGTTGTACTCCAAGTAGGGGCTAGGTGTGACAATTGAACAGGAAAATGTGAACAAGCCTTCTAATCAAATGTAATCCCAAGTAAAAAGCACCATTCCACAAACTATTCCAAGTTTGTGTATGGTTTTATCGAGTTAAGCATATATGATGAGTACAAACTCGGACAGCCCATGATAACCTGAATGGTTTCGTCTCTAATTAAGTTTTTTTTTTATTAAATTTTTTTTATTGAGGCATTTTGTATGGGATATTGTGGAAACTTGGAATTGAAGTTC
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
