WERAM Information

Tag Content
WERAM ID WERAM-Arl-0038
Ensembl Protein ID fgenesh1_pm.C_scaffold_7000002
Gene Name HD1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh1_pm.C_scaffold_7000002 fgenesh1_pm.C_scaffold_7000002 fgenesh1_pm.C_scaffold_7000002
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-I 2.70e-165 550.2 17 328
Organism Arabidopsis lyrata
Domain Profile
  HDAC Class-I
                     class-1.txt   1 kkvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeel 79 
                                     +kv+y+yd++vg+y+ygq+hpmkp+r+++th L+ +ygl ++++++kp  a+ ++l++fh+++y++fl++++pe++++ 
  fgenesh1_pm.C_scaffold_7000002  17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQ 95 
                                     589**************************************************************************** PP
                     class-1.txt  80 skelkkfnvgedcPvfdglfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkk 158
                                     +++lk+fnvgedcPvfdgl+++cq+++G+s+ ++ kLn++ +diainwaGGlhhakk+easGfcyvnDivlailellk+
  fgenesh1_pm.C_scaffold_7000002  96 IRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ 174
                                     ******************************************************************************* PP
                     class-1.txt 159 hkrvlyididlhhGDgveeafyttdrvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksv 237
                                     h+rvly+did+hhGDgveeafy+tdrvmtvsfhk+g+ +fPgtG+++d+g ++gkyy++nvPl+dgidDesy+ +fk++
  fgenesh1_pm.C_scaffold_7000002 175 HERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGD-YFPGTGHIQDIGYGNGKYYSLNVPLDDGIDDESYHLLFKPI 252
                                     *************************************.***************************************** PP
                     class-1.txt 238 iskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlpllvlGGGGYtlrnvaRcwtyetavvl 313
                                     + kv+e+f+P avvlqcGaDsl+gDrlg+fnlsikghaecvkf++sfn+pll+lGGGGYt+rnvaRcw+yet+v+l
  fgenesh1_pm.C_scaffold_7000002 253 MGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVAL 328
                                     *************************************************************************986 PP
Protein Sequence
(Fasta)		MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ 60
VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK RFNVGEDCPV FDGLYSFCQT 120
YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY 180
VDIDIHHGDG VEEAFYATDR VMTVSFHKFG DYFPGTGHIQ DIGYGNGKYY SLNVPLDDGI 240
DDESYHLLFK PIMGKVMEVF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN 300
VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN 360
KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTEAPE VDEDQEDGDK RWDPDSDMDV 420
DDDRKPIPSR VKREAVEPDT KDKDGLKGVM ERGKGCEVGV DESGSSKVTG VNPVGMEEAS 480
VKMEEEGTNK GGADQVFPKI
Nucleotide Sequence
(Fasta)		ATGGATACTG GCGGCAATTC GCTGGCGTCC GGACCTGATG GTGTGAAGAG GAAAGTTTGT 60
TATTTCTATG ACCCTGAGGT CGGCAATTAC TACTATGGCC AAGGTCACCC CATGAAGCCC 120
CATCGCATCC GCATGACCCA TGCCCTTCTC GCTCACTACG GTCTCCTTCA GCATATGCAG 180
GTTCTCAAGC CCTTCCCTGC CCGCGACCGT GATCTCTGCC GCTTCCACGC CGACGACTAC 240
GTCTCCTTTC TCCGCAGCAT TACCCCTGAA ACCCAGCAAG ATCAGATTCG CCAACTCAAG 300
CGCTTCAATG TTGGTGAAGA CTGTCCCGTC TTTGACGGCC TTTATTCCTT TTGCCAGACC 360
TATGCTGGGG GCTCTGTTGG TGGCTCTGTC AAGCTAAACC ACGGCCTCTG CGATATTGCC 420
ATCAACTGGG CTGGTGGTCT CCATCATGCT AAGAAGTGCG AGGCCTCTGG CTTCTGTTAC 480
GTCAATGATA TCGTCTTAGC TATCCTAGAG CTCCTTAAGC AGCATGAGCG TGTTCTTTAT 540
GTCGATATTG ATATCCACCA CGGGGATGGA GTGGAGGAGG CATTTTATGC TACTGACAGG 600
GTTATGACTG TCTCGTTCCA TAAATTTGGT GATTACTTTC CCGGTACAGG TCACATACAG 660
GATATAGGTT ATGGTAACGG AAAGTACTAT TCTCTCAATG TACCACTGGA TGATGGAATT 720
GATGATGAGA GCTATCATCT GTTATTCAAG CCCATCATGG GGAAAGTTAT GGAAGTTTTC 780
CGACCAGGGG CTGTGGTATT GCAGTGCGGT GCTGATTCAT TGTCTGGTGA TAGGTTGGGG 840
TGCTTTAATC TTTCGATCAA AGGTCATGCT GAGTGCGTCA AATTTATGAG ATCGTTCAAT 900
GTTCCCCTAC TGCTCTTGGG TGGTGGTGGT TACACCATCC GCAATGTTGC CCGTTGCTGG 960
TGCTACGAGA CTGGAGTTGC ACTTGGTGTT GAAGTTGAAG ATAAGATGCC GGAGCATGAA 1020
TATTATGAAT ATTTTGGTCC AGACTATACA CTTCACGTTG CTCCAAGTAA CATGGAAAAT 1080
AAGAATTCTC GTCAGATGCT TGAAGAGATT CGCAATGACC TTCTCCACAA TCTCTCTAAG 1140
CTTCAGCATG CTCCAAGTGT GCCATTCCAG GAAAGACCAC CAGATACAGA GGCTCCCGAG 1200
GTTGATGAAG ACCAAGAAGA TGGAGATAAA AGATGGGATC CGGATTCAGA CATGGATGTA 1260
GATGATGACC GTAAACCTAT ACCAAGCAGA GTAAAAAGAG AAGCTGTTGA ACCAGATACA 1320
AAGGACAAGG ATGGACTGAA AGGAGTTATG GAGCGTGGCA AAGGTTGTGA GGTGGGGGTG 1380
GATGAGAGTG GAAGCAGTAA GGTTACAGGA GTGAACCCAG TGGGAATGGA GGAAGCAAGT 1440
GTGAAAATGG AAGAGGAAGG AACAAACAAG GGTGGGGCGG ACCAGGTGTT TCCTAAAATA 1500
TAA 1504
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Art-0112 AT4G38130.1 Arabidopsis thaliana 98 0.0 978
WERAM-Brr-0202 Bra040131.1-P Brassica rapa 95 0.0 949
WERAM-Bro-0021 Bo1g151980.1 Brassica oleracea 95 0.0 927
WERAM-Thc-0026 EOX98961 Theobroma cacao 86 0.0 870
WERAM-Viv-0012 VIT_03s0038g04240.t01 Vitis vinifera 84 0.0 849
WERAM-Pot-0112 POPTR_0009s17200.1 Populus trichocarpa 84 0.0 841
WERAM-Prp-0056 EMJ02177 Prunus persica 84 0.0 809
WERAM-Sol-0120 Solyc09g091440.2.1 Solanum lycopersicum 81 0.0 807
WERAM-Glm-0156 GLYMA13G06010.3 Glycine max 82 0.0 800
WERAM-Sot-0088 PGSC0003DMT400076252 Solanum tuberosum 76 0.0 790
WERAM-Met-0084 KEH36404 Medicago truncatula 82 0.0 785
WERAM-Brd-0020 BRADI1G37290.1 Brachypodium distachyon 78 0.0 767
WERAM-Ors-0059 OS06T0583400-01 Oryza sativa 78 0.0 763
WERAM-Orb-0066 OBART06G19560.1 Oryza barthii 78 0.0 763
WERAM-Orp-0064 OPUNC06G17670.1 Oryza punctata 79 0.0 762
WERAM-Amt-0016 ERM94967 Amborella trichopoda 77 0.0 757
WERAM-Orr-0068 ORUFI06G20660.1 Oryza rufipogon 77 0.0 753
WERAM-Orgl-0064 OGLUM06G20570.1 Oryza glumaepatula 77 0.0 753
WERAM-Tra-0318 Traes_7DL_578CF3F0D.2 Triticum aestivum 83 0.0 748
WERAM-Sei-0069 Si016908m Setaria italica 79 0.0 744
WERAM-Ori-0039 BGIOSGA012324-PA Oryza indica 82 0.0 743
WERAM-Orbr-0074 OB06G27130.1 Oryza brachyantha 76 0.0 741
WERAM-Sob-0135 Sb10g022820.1 Sorghum bicolor 76 0.0 739
WERAM-Php-0088 PP1S351_29V6.1 Physcomitrella patens 83 0.0 736
WERAM-Orm-0063 OMERI06G19730.1 Oryza meridionalis 83 0.0 734
WERAM-Zem-0099 GRMZM2G172883_P01 Zea mays 75 0.0 721
WERAM-Aet-0051 EMT16627 Aegilops tauschii 75 0.0 721
WERAM-Orni-0065 ONIVA06G23170.1 Oryza nivara 77 0.0 719
WERAM-Lep-0066 LPERR06G16070.1 Leersia perrieri 79 0.0 706
WERAM-Sem-0132 EFJ35052 Selaginella moellendorffii 84 0.0 706
WERAM-Hov-0099 MLOC_71091.1 Hordeum vulgare 88 0.0 679
WERAM-Mua-0048 GSMUA_Achr2P19590_001 Musa acuminata 67 0.0 640
WERAM-Osl-0002 ABO94711 Ostreococcus lucimarinus 72 3e-175 612
WERAM-Org-0090 ORGLA08G0103000.1 Oryza glaberrima 62 6e-170 594
WERAM-Anc-0033 ENSACAP00000004062.3 Anolis carolinensis 67 1e-166 583
WERAM-Ran-0062 ENSRNOP00000012854.5 Rattus norvegicus 68 2e-166 583
WERAM-Ova-0221 ENSOARP00000022517.1 Ovis aries 68 2e-166 583
WERAM-Bot-0118 ENSBTAP00000016877.5 Bos taurus 68 2e-166 583
WERAM-Mum-0093 ENSMUSP00000099657.4 Mus musculus 68 2e-166 583
WERAM-Gaga-0034 ENSGALP00000005212.3 Gallus gallus 68 2e-166 583
WERAM-Ocp-0006 ENSOPRP00000000780.1 Ochotona princeps 68 3e-166 582
WERAM-Tag-0022 ENSTGUP00000001473.1 Taeniopygia guttata 68 3e-166 582
WERAM-Orc-0030 ENSOCUP00000003186.2 Oryctolagus cuniculus 68 3e-166 582
WERAM-Hos-0092 ENSP00000362649.3 Homo sapiens 68 4e-166 582
WERAM-Gog-0132 ENSGGOP00000011454.2 Gorilla gorilla 68 4e-166 582
WERAM-Otg-0072 ENSOGAP00000005101.2 Otolemur garnettii 68 4e-166 582
WERAM-Cap-0092 ENSCPOP00000006985.2 Cavia porcellus 68 4e-166 581
WERAM-Nol-0026 ENSNLEP00000003167.1 Nomascus leucogenys 68 5e-166 581
WERAM-Loa-0056 ENSLAFP00000004079.2 Loxodonta africana 67 2e-165 580
WERAM-Ptv-0152 ENSPVAP00000012567.1 Pteropus vampyrus 67 2e-165 579
WERAM-Mup-0173 ENSMPUP00000015122.1 Mustela putorius furo 67 2e-165 579
WERAM-Dan-0175 ENSDNOP00000033349.1 Dasypus novemcinctus 68 1e-164 577
WERAM-Caf-0116 ENSCAFP00000015619.3 Canis familiaris 67 2e-164 576
WERAM-Poa-0013 ENSPPYP00000001838.2 Pongo abelii 67 2e-164 576
WERAM-Myl-0152 ENSMLUP00000012593.2 Myotis lucifugus 67 2e-164 576
WERAM-Tar-0085 ENSTRUP00000016627.1 Takifugu rubripes 67 2e-163 573
WERAM-Pof-0181 ENSPFOP00000015600.1 Poecilia formosa 68 2e-163 572
WERAM-Xim-0061 ENSXMAP00000005239.1 Xiphophorus maculatus 67 1e-162 570
WERAM-Orla-0197 ENSORLP00000022529.1 Oryzias latipes 67 2e-162 569
WERAM-Aim-0087 ENSAMEP00000008076.1 Ailuropoda melanoleuca 67 3e-162 569
WERAM-Ten-0109 ENSTNIP00000012136.1 Tetraodon nigroviridis 67 5e-162 568
WERAM-Orn-0087 ENSONIP00000009730.1 Oreochromis niloticus 67 5e-162 568
WERAM-Gam-0033 ENSGMOP00000003469.1 Gadus morhua 68 7e-162 567
WERAM-Pes-0020 ENSPSIP00000004435.1 Pelodiscus sinensis 67 8e-162 567
WERAM-Dar-0035 ENSDARP00000051798.4 Danio rerio 66 9e-162 567
WERAM-Tut-0167 ENSTTRP00000014262.1 Tursiops truncatus 64 1e-161 566
WERAM-Gaa-0093 ENSGACP00000012045.1 Gasterosteus aculeatus 67 2e-161 566
WERAM-Cii-0014 ENSCINP00000005410.3 Ciona intestinalis 64 3e-161 565
WERAM-Drm-0018 FBpp0073173 Drosophila melanogaster 65 3e-161 565
WERAM-Chs-0011 ENSCSAP00000016960.1 Chlorocebus sabaeus 68 1e-160 563
WERAM-Sus-0201 ENSSSCP00000023024.1 Sus scrofa 65 2e-160 563
WERAM-Pat-0210 ENSPTRP00000060659.1 Pan troglodytes 68 2e-160 563
WERAM-Anp-0136 ENSAPLP00000014652.1 Anas platyrhynchos 66 2e-160 562
WERAM-Meg-0047 ENSMGAP00000004521.2 Meleagris gallopavo 67 3e-160 562
WERAM-Asm-0120 ENSAMXP00000012237.1 Astyanax mexicanus 66 3e-160 562
WERAM-Leo-0014 ENSLOCP00000002993.1 Lepisosteus oculatus 68 6e-160 561
WERAM-Eqc-0125 ENSECAP00000014039.1 Equus caballus 67 1e-159 560
WERAM-Xet-0037 ENSXETP00000011480.3 Xenopus tropicalis 67 1e-159 560
WERAM-Ect-0064 ENSETEP00000006883.1 Echinops telfairi 65 4e-159 558
WERAM-Mod-0165 ENSMODP00000022264.3 Monodelphis domestica 65 8e-159 557
WERAM-Fia-0139 ENSFALP00000011453.1 Ficedula albicollis 65 9e-159 557
WERAM-Ict-0111 ENSSTOP00000011457.2 Ictidomys tridecemlineatus 65 1e-158 557
WERAM-Tru-0006 TRIUR3_03674-P1 Triticum urartu 79 1e-158 557
WERAM-Paa-0030 ENSPANP00000015145.1 Papio anubis 65 1e-158 557
WERAM-Fec-0156 ENSFCAP00000015379.2 Felis catus 64 5e-154 541
WERAM-Ere-0068 ENSEEUP00000005465.1 Erinaceus europaeus 65 2e-153 539
WERAM-Sah-0134 ENSSHAP00000014467.1 Sarcophilus harrisii 65 2e-153 539
WERAM-Cae-0005 C53A5.3 Caenorhabditis elegans 62 8e-153 537
WERAM-Cym-0014 CMJ129CT Cyanidioschyzon merolae 64 4e-151 532
WERAM-Tas-0085 ENSTSYP00000008588.1 Tarsius syrichta 65 5e-151 531
WERAM-Asni-0020 CADANGAP00005938 Aspergillus niger 58 2e-150 529
WERAM-Asf-0020 CADAFLAP00008921 Aspergillus flavus 61 2e-150 529
WERAM-Scs-0023 EDO03342 Sclerotinia sclerotiorum 59 3e-150 529
WERAM-Coi-0024 EAS33504 Coccidioides immitis 61 1e-149 527
WERAM-Asn-0024 CADANIAP00005952 Aspergillus nidulans 58 2e-149 526
WERAM-Asc-0037 CADACLAP00008612 Aspergillus clavatus 58 4e-149 525
WERAM-Trv-0003 EHK19072 Trichoderma virens 59 4e-149 525
WERAM-Asfu-0015 CADAFUAP00003503 Aspergillus fumigatus 59 8e-149 524
WERAM-Map-0015 MAPG_05105T0 Magnaporthe poae 59 4e-148 521
WERAM-Lac-0087 ENSLACP00000011092.1 Latimeria chalumnae 60 7e-148 521
WERAM-Gag-0026 GGTG_08607T0 Gaeumannomyces graminis 59 8e-148 521
WERAM-Ved-0020 EGY15146 Verticillium dahliae 51 2e-147 520
WERAM-Prc-0059 ENSPCAP00000005589.1 Procavia capensis 64 4e-147 518
Created Date 25-Jun-2016