| Tag |
Content |
| WERAM ID |
WERAM-Brr-0202 |
| Ensembl Protein ID |
Bra040131.1-P |
| Gene Name |
HD1 |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
2.30e-165 |
550.7 |
17 |
328 |
|
| Organism |
Brassica rapa |
| Domain Profile |
HDAC Class-I
class-1.txt 1 kkvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfd 96
+kv+y+yd++vg+y+ygq+hpmkp+r+++th L+ +ygl ++++++kp a+ ++l++fh+++y++fl++++pe++++ +++lk+fnvgedcPvfd
Bra040131.1-P 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFD 112
589********************************************************************************************* PP
class-1.txt 97 glfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlhhGDgveeafyttdrvmtvsfhk 192
gl+++cq+++G+s+ ++ kLn++ +diainwaGGlhhakk+easGfcyvnDivlailellk+h+rvly+did+hhGDgveeafy+tdrvmtvsfhk
Bra040131.1-P 113 GLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHK 208
************************************************************************************************ PP
class-1.txt 193 ygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlpl 288
+g+ +fPgtG+++d+g ++gkyy++nvPl+dgidDesy+ +fk+++ kv+e+f+P avvlqcGaDsl+gDrlg+fnlsikghaecvkf++sfn+pl
Bra040131.1-P 209 FGD-YFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPL 303
***.******************************************************************************************** PP
class-1.txt 289 lvlGGGGYtlrnvaRcwtyetavvl 313
l+lGGGGYt+rnvaRcw+yet+v+l
Bra040131.1-P 304 LLLGGGGYTIRNVARCWCYETGVAL 328
**********************986 PP
|
Protein Sequence
(Fasta) | MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ 60
VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK RFNVGEDCPV FDGLYSFCQT 120
YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY 180
VDIDIHHGDG VEEAFYATDR VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI 240
DDESYHLLFK PIMGKVMEIF KPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN 300
VPLLLLGGGG YTIRNVARCW CYETGVALGI EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN 360
KNSRQMLEVI RNDLLQNLSK LQHAPSVPFQ ERPPDTETPE VDEDQEDGDK RWDADSDMDV 420
DDDRKPIPSR VKREAVEPDG KDKDGVKGVM ERGKGFDVGM EESGSTTKVS GVNSVGMDEA 480
GVKMEEEGTT NKSGGDQVFP KT 502Protein Fasta Sequence
>Bra040131.1-P|Class-I|Brassica rapa
MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVEDKMPEHEYYEYFGPDYTLHVAPSNMENKNSRQMLEVIRNDLLQNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDADSDMDVDDDRKPIPSRVKREAVEPDGKDKDGVKGVMERGKGFDVGMEESGSTTKVSGVNSVGMDEAGVKMEEEGTTNKSGGDQVFPKT |
Nucleotide Sequence
(Fasta) | ATGGACACCG GAGGAAACTC GCTGGCCTCT GGACCAGACG GTGTGAAGAG GAAAGTGTGC 60
TACTTCTACG ACCCAGAGGT TGGGAACTAC TACTACGGCC AAGGCCACCC CATGAAGCCT 120
CACCGCATCC GCATGACGCA CGCTCTCCTC GCTCACTACG GTCTCCTCCA GCACATGCAA 180
GTCCTCAAGC CTTTCCCCGC CCGTGACCGT GACCTCTGCC GCTTCCACGC CGACGACTAC 240
GTCTCCTTTC TCCGCAGCAT TACGCCCGAG ACTCAGCAGG ATCAGATCCG CCAGCTCAAG 300
CGGTTCAACG TTGGTGAAGA CTGTCCTGTC TTTGACGGGC TTTATTCCTT TTGTCAGACG 360
TATGCTGGTG GCTCTGTTGG TGGTTCTGTT AAGCTTAACC ATGGGCTTTG TGATATTGCT 420
ATTAACTGGG CTGGTGGTCT TCATCATGCT AAGAAGTGTG AGGCCTCTGG CTTCTGCTAC 480
GTTAATGATA TCGTCTTAGC TATCCTTGAG CTGCTTAAGC AGCATGAGCG TGTTCTGTAC 540
GTTGATATCG ACATTCACCA CGGGGACGGA GTGGAGGAGG CGTTTTACGC TACCGACAGG 600
GTCATGACCG TCTCGTTCCA TAAGTTCGGA GACTACTTCC CCGGTACAGG CCACATACAA 660
GACATTGGCT ACGGAAGTGG AAAGTACTAT TCACTCAACG TACCACTGGA CGATGGTATC 720
GACGATGAGA GCTATCATCT CTTGTTCAAA CCCATCATGG GGAAAGTGAT GGAAATTTTC 780
AAACCAGGTG CGGTCGTACT CCAATGCGGC GCTGATTCCT TGTCTGGCGA TAGGCTGGGA 840
TGCTTTAACC TCTCCATCAA AGGCCATGCC GAGTGTGTCA AGTTCATGAG ATCTTTCAAC 900
GTTCCGTTAC TGCTCCTTGG TGGTGGTGGT TACACCATCC GCAACGTTGC GCGTTGCTGG 960
TGCTACGAGA CTGGAGTTGC GCTTGGGATC GAGGTCGAGG ACAAGATGCC GGAGCATGAG 1020
TACTATGAGT ACTTTGGTCC GGACTATACG CTCCACGTTG CTCCGAGTAA CATGGAGAAC 1080
AAGAACTCTC GGCAGATGCT TGAAGTGATT CGTAATGACT TGCTCCAGAA TCTCTCGAAG 1140
CTTCAGCATG CTCCTAGTGT GCCGTTTCAG GAAAGGCCGC CAGATACTGA GACTCCTGAG 1200
GTAGATGAAG ACCAAGAAGA TGGAGATAAA AGATGGGATG CAGATTCTGA CATGGATGTA 1260
GATGATGATC GTAAACCTAT ACCAAGCAGA GTGAAAAGAG AAGCTGTTGA GCCTGATGGA 1320
AAGGACAAGG ATGGAGTGAA AGGAGTGATG GAGCGTGGGA AAGGTTTTGA TGTGGGCATG 1380
GAGGAGAGTG GAAGCACCAC CAAGGTTTCA GGAGTAAACT CAGTGGGAAT GGATGAAGCA 1440
GGTGTGAAAA TGGAAGAGGA AGGCACAACA AACAAGTCAG GGGGAGATCA AGTGTTTCCT 1500
AAAACCTAA
Nucleotide Fasta Sequence
>Bra040131.1-P|Class-I|Brassica rapa
ATGGACACCGGAGGAAACTCGCTGGCCTCTGGACCAGACGGTGTGAAGAGGAAAGTGTGCTACTTCTACGACCCAGAGGTTGGGAACTACTACTACGGCCAAGGCCACCCCATGAAGCCTCACCGCATCCGCATGACGCACGCTCTCCTCGCTCACTACGGTCTCCTCCAGCACATGCAAGTCCTCAAGCCTTTCCCCGCCCGTGACCGTGACCTCTGCCGCTTCCACGCCGACGACTACGTCTCCTTTCTCCGCAGCATTACGCCCGAGACTCAGCAGGATCAGATCCGCCAGCTCAAGCGGTTCAACGTTGGTGAAGACTGTCCTGTCTTTGACGGGCTTTATTCCTTTTGTCAGACGTATGCTGGTGGCTCTGTTGGTGGTTCTGTTAAGCTTAACCATGGGCTTTGTGATATTGCTATTAACTGGGCTGGTGGTCTTCATCATGCTAAGAAGTGTGAGGCCTCTGGCTTCTGCTACGTTAATGATATCGTCTTAGCTATCCTTGAGCTGCTTAAGCAGCATGAGCGTGTTCTGTACGTTGATATCGACATTCACCACGGGGACGGAGTGGAGGAGGCGTTTTACGCTACCGACAGGGTCATGACCGTCTCGTTCCATAAGTTCGGAGACTACTTCCCCGGTACAGGCCACATACAAGACATTGGCTACGGAAGTGGAAAGTACTATTCACTCAACGTACCACTGGACGATGGTATCGACGATGAGAGCTATCATCTCTTGTTCAAACCCATCATGGGGAAAGTGATGGAAATTTTCAAACCAGGTGCGGTCGTACTCCAATGCGGCGCTGATTCCTTGTCTGGCGATAGGCTGGGATGCTTTAACCTCTCCATCAAAGGCCATGCCGAGTGTGTCAAGTTCATGAGATCTTTCAACGTTCCGTTACTGCTCCTTGGTGGTGGTGGTTACACCATCCGCAACGTTGCGCGTTGCTGGTGCTACGAGACTGGAGTTGCGCTTGGGATCGAGGTCGAGGACAAGATGCCGGAGCATGAGTACTATGAGTACTTTGGTCCGGACTATACGCTCCACGTTGCTCCGAGTAACATGGAGAACAAGAACTCTCGGCAGATGCTTGAAGTGATTCGTAATGACTTGCTCCAGAATCTCTCGAAGCTTCAGCATGCTCCTAGTGTGCCGTTTCAGGAAAGGCCGCCAGATACTGAGACTCCTGAGGTAGATGAAGACCAAGAAGATGGAGATAAAAGATGGGATGCAGATTCTGACATGGATGTAGATGATGATCGTAAACCTATACCAAGCAGAGTGAAAAGAGAAGCTGTTGAGCCTGATGGAAAGGACAAGGATGGAGTGAAAGGAGTGATGGAGCGTGGGAAAGGTTTTGATGTGGGCATGGAGGAGAGTGGAAGCACCACCAAGGTTTCAGGAGTAAACTCAGTGGGAATGGATGAAGCAGGTGTGAAAATGGAAGAGGAAGGCACAACAAACAAGTCAGGGGGAGATCAAGTGTTTCCTAAAACCTAA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
