WERAM Information


Tag Content
WERAM ID WERAM-Bro-0021
Ensembl Protein ID Bo1g151980.1
Gene Name HD1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo1g151980 Bo1g151980.1 Bo1g151980.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-I 3.30e-165 550.8 17 328
Organism Brassica oleracea
Domain Profile
  HDAC Class-I

   class-1.txt   1 kkvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdg 97 
+kv+y+yd++vg+y+ygq+hpmkp+r+++th L+ +ygl ++++++kp a+ ++l++fh+++y++fl++++pe++++ +++lk+fnvgedcPvfdg
Bo1g151980.1 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDG 113
589********************************************************************************************** PP
class-1.txt 98 lfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlhhGDgveeafyttdrvmtvsfhkyg 194
l+++cq+++G+s+ ++ kLn++ +diainwaGGlhhakk+easGfcyvnDivlailellk+h+rvly+did+hhGDgveeafy+tdrvmtvsfhk+g
Bo1g151980.1 114 LYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFG 210
************************************************************************************************* PP
class-1.txt 195 eeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlpllvl 291
+ +fPgtG+++d+g ++gkyy++nvPl+dgidDesy+ +fk+++ kv+e+f+P avvlqcGaDsl+gDrlg+fnlsikghaecvkf++sfn+pll+l
Bo1g151980.1 211 D-YFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306
*.*********************************************************************************************** PP
class-1.txt 292 GGGGYtlrnvaRcwtyetavvl 313
GGGGYt+rnvaRcw+yet+v+l
Bo1g151980.1 307 GGGGYTIRNVARCWCYETGVAL 328
*******************986 PP

Protein Sequence
(Fasta)
MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ 60
VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK RFNVGEDCPV FDGLYSFCQT 120
YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY 180
VDIDIHHGDG VEEAFYATDR VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI 240
DDESYHLLFK PIMGKVMEIF KPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN 300
VPLLLLGGGG YTIRNVARCW CYETGVALGI EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN 360
KNSRQMLEVI RNDLLQNLSK LQHAPSVPFQ ERPPDTETPE VDEDQEDEDK RWDADSDMDV 420
DDDRKPIPSR VKREAVESDA KDKDGVKGVM ERGKGFEVGM EESGSTTKVS GVNSVGMEEA 480
GVKMEEEGTT NKSGGDQVFP KT 502
Nucleotide Sequence
(Fasta)
ATGGACACCG GAGGAAACTC GCTGGCCTCT GGACCAGACG GTGTGAAGAG GAAAGTGTGC 60
TACTTCTACG ACCCGGAGGT TGGGAACTAC TACTACGGCC AAGGCCACCC CATGAAGCCT 120
CACCGCATCC GCATGACGCA CGCTCTCCTC GCTCACTACG GTCTCCTCCA GCACATGCAA 180
GTCCTCAAGC CTTTCCCCGC CCGTGACCGT GACCTCTGCC GCTTCCACGC CGACGACTAC 240
GTCTCCTTTC TCCGCAGCAT TACGCCCGAG ACTCAGCAGG ATCAGATCCG CCAGCTCAAG 300
CGGTTCAACG TTGGTGAAGA CTGTCCTGTC TTTGACGGGC TTTATTCCTT TTGTCAGACG 360
TATGCTGGTG GCTCTGTTGG TGGATCTGTT AAGCTTAACC ACGGGCTTTG TGATATTGCT 420
ATTAACTGGG CTGGTGGTCT CCATCATGCT AAAAAGTGTG AGGCCTCTGG CTTCTGCTAC 480
GTTAATGATA TCGTCTTAGC TATCCTTGAG CTTCTTAAGC AGCATGAGCG TGTTCTGTAT 540
GTTGATATCG ACATCCACCA CGGGGACGGA GTGGAGGAGG CGTTTTACGC TACCGACAGG 600
GTCATGACCG TCTCATTCCA CAAATTCGGA GATTACTTTC CCGGTACAGG CCACATACAA 660
GACATTGGCT ACGGAAGTGG AAAGTACTAT TCTCTCAACG TACCACTGGA CGATGGTATC 720
GACGACGAGA GCTATCATCT CTTGTTCAAA CCCATCATGG GGAAAGTGAT GGAAATTTTC 780
AAACCAGGTG CGGTCGTACT GCAGTGCGGC GCTGATTCCT TGTCTGGCGA TAGGCTCGGA 840
TGCTTTAACC TCTCCATCAA AGGCCACGCC GAGTGTGTCA AGTTCATGAG ATCTTTCAAC 900
GTTCCGTTAC TGCTCCTTGG TGGTGGTGGT TACACTATCC GCAACGTTGC GCGTTGCTGG 960
TGCTACGAGA CTGGAGTTGC GCTTGGGATC GAAGTCGAGG ACAAGATGCC GGAGCATGAG 1020
TACTATGAGT ACTTTGGTCC GGACTATACG CTTCACGTTG CTCCGAGTAA CATGGAGAAC 1080
AAGAACTCTC GGCAGATGCT TGAAGTGATT CGTAATGACT TGCTCCAGAA TCTCTCGAAG 1140
CTTCAGCATG CTCCTAGTGT GCCGTTTCAG GAAAGGCCGC CAGATACTGA GACTCCTGAG 1200
GTAGATGAAG ACCAAGAGGA TGAAGATAAA AGATGGGATG CAGATTCTGA CATGGATGTA 1260
GATGATGATC GCAAACCTAT ACCAAGCAGA GTGAAGAGAG AAGCTGTTGA ATCTGATGCA 1320
AAGGACAAGG ATGGAGTGAA AGGAGTGATG GAGCGTGGGA AAGGTTTTGA GGTGGGCATG 1380
GAGGAGAGTG GAAGCACCAC CAAGGTTTCA GGAGTAAACT CAGTGGGAAT GGAGGAAGCA 1440
GGTGTGAAAA TGGAAGAGGA AGGCACAACA AACAAGTCAG GGGGAGATCA AGTGTTTCCT 1500
AAAACATAA
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0202 Bra040131.1-P Brassica rapa 99 0.0 989
WERAM-Arl-0038 fgenesh1_pm.C_scaffold_7000002 Arabidopsis lyrata 95 0.0 948
WERAM-Art-0112 AT4G38130.1 Arabidopsis thaliana 95 0.0 943
WERAM-Thc-0026 EOX98961 Theobroma cacao 85 0.0 855
WERAM-Viv-0012 VIT_03s0038g04240.t01 Vitis vinifera 83 0.0 838
WERAM-Pot-0112 POPTR_0009s17200.1 Populus trichocarpa 83 0.0 835
WERAM-Prp-0056 EMJ02177 Prunus persica 84 0.0 812
WERAM-Sol-0120 Solyc09g091440.2.1 Solanum lycopersicum 82 0.0 807
WERAM-Glm-0156 GLYMA13G06010.3 Glycine max 81 0.0 792
WERAM-Sot-0088 PGSC0003DMT400076252 Solanum tuberosum 76 0.0 788
WERAM-Met-0084 KEH36404 Medicago truncatula 80 0.0 785
WERAM-Brd-0020 BRADI1G37290.1 Brachypodium distachyon 76 0.0 765
WERAM-Orp-0064 OPUNC06G17670.1 Oryza punctata 77 0.0 762
WERAM-Amt-0016 ERM94967 Amborella trichopoda 78 0.0 761
WERAM-Orb-0066 OBART06G19560.1 Oryza barthii 77 0.0 760
WERAM-Ors-0059 OS06T0583400-01 Oryza sativa 77 0.0 760
WERAM-Orr-0068 ORUFI06G20660.1 Oryza rufipogon 76 0.0 751
WERAM-Orgl-0064 OGLUM06G20570.1 Oryza glumaepatula 76 0.0 750
WERAM-Tra-0318 Traes_7DL_578CF3F0D.2 Triticum aestivum 83 0.0 750
WERAM-Sei-0069 Si016908m Setaria italica 79 0.0 748
WERAM-Ori-0039 BGIOSGA012324-PA Oryza indica 82 0.0 746
WERAM-Php-0088 PP1S351_29V6.1 Physcomitrella patens 83 0.0 738
WERAM-Orm-0063 OMERI06G19730.1 Oryza meridionalis 83 0.0 737
WERAM-Orbr-0074 OB06G27130.1 Oryza brachyantha 75 0.0 737
WERAM-Sob-0135 Sb10g022820.1 Sorghum bicolor 75 0.0 734
WERAM-Zem-0099 GRMZM2G172883_P01 Zea mays 72 0.0 726
WERAM-Aet-0051 EMT16627 Aegilops tauschii 74 0.0 725
WERAM-Orni-0065 ONIVA06G23170.1 Oryza nivara 76 0.0 717
WERAM-Sem-0132 EFJ35052 Selaginella moellendorffii 84 0.0 708
WERAM-Lep-0066 LPERR06G16070.1 Leersia perrieri 78 0.0 705
WERAM-Hov-0099 MLOC_71091.1 Hordeum vulgare 88 0.0 681
WERAM-Mua-0048 GSMUA_Achr2P19590_001 Musa acuminata 66 0.0 635
WERAM-Osl-0002 ABO94711 Ostreococcus lucimarinus 72 1e-176 617
WERAM-Org-0090 ORGLA08G0103000.1 Oryza glaberrima 62 2e-169 592
WERAM-Ran-0062 ENSRNOP00000012854.5 Rattus norvegicus 68 9e-167 584
WERAM-Mum-0093 ENSMUSP00000099657.4 Mus musculus 68 9e-167 583
WERAM-Anc-0033 ENSACAP00000004062.3 Anolis carolinensis 67 1e-166 583
WERAM-Ova-0221 ENSOARP00000022517.1 Ovis aries 68 1e-166 583
WERAM-Bot-0118 ENSBTAP00000016877.5 Bos taurus 68 1e-166 583
WERAM-Ocp-0006 ENSOPRP00000000780.1 Ochotona princeps 68 1e-166 583
WERAM-Gaga-0034 ENSGALP00000005212.3 Gallus gallus 68 1e-166 583
WERAM-Tag-0022 ENSTGUP00000001473.1 Taeniopygia guttata 68 2e-166 583
WERAM-Orc-0030 ENSOCUP00000003186.2 Oryctolagus cuniculus 68 2e-166 583
WERAM-Cap-0092 ENSCPOP00000006985.2 Cavia porcellus 68 2e-166 582
WERAM-Otg-0072 ENSOGAP00000005101.2 Otolemur garnettii 68 2e-166 582
WERAM-Hos-0092 ENSP00000362649.3 Homo sapiens 68 2e-166 582
WERAM-Gog-0132 ENSGGOP00000011454.2 Gorilla gorilla 68 2e-166 582
WERAM-Nol-0026 ENSNLEP00000003167.1 Nomascus leucogenys 68 2e-166 582
WERAM-Ptv-0152 ENSPVAP00000012567.1 Pteropus vampyrus 67 6e-166 581
WERAM-Loa-0056 ENSLAFP00000004079.2 Loxodonta africana 67 8e-166 580
WERAM-Mup-0173 ENSMPUP00000015122.1 Mustela putorius furo 67 1e-165 580
WERAM-Dan-0175 ENSDNOP00000033349.1 Dasypus novemcinctus 68 6e-165 578
WERAM-Poa-0013 ENSPPYP00000001838.2 Pongo abelii 67 8e-165 577
WERAM-Caf-0116 ENSCAFP00000015619.3 Canis familiaris 67 8e-165 577
WERAM-Myl-0152 ENSMLUP00000012593.2 Myotis lucifugus 67 9e-165 577
WERAM-Pof-0181 ENSPFOP00000015600.1 Poecilia formosa 68 5e-164 575
WERAM-Tar-0085 ENSTRUP00000016627.1 Takifugu rubripes 67 7e-164 574
WERAM-Xim-0061 ENSXMAP00000005239.1 Xiphophorus maculatus 67 6e-163 571
WERAM-Orla-0197 ENSORLP00000022529.1 Oryzias latipes 67 8e-163 570
WERAM-Aim-0087 ENSAMEP00000008076.1 Ailuropoda melanoleuca 67 1e-162 570
WERAM-Orn-0087 ENSONIP00000009730.1 Oreochromis niloticus 67 1e-162 570
WERAM-Gam-0033 ENSGMOP00000003469.1 Gadus morhua 68 1e-162 570
WERAM-Ten-0109 ENSTNIP00000012136.1 Tetraodon nigroviridis 67 1e-162 570
WERAM-Tut-0167 ENSTTRP00000014262.1 Tursiops truncatus 64 3e-162 568
WERAM-Gaa-0093 ENSGACP00000012045.1 Gasterosteus aculeatus 67 3e-162 568
WERAM-Pes-0020 ENSPSIP00000004435.1 Pelodiscus sinensis 67 4e-162 568
WERAM-Dar-0035 ENSDARP00000051798.4 Danio rerio 66 6e-162 568
WERAM-Cii-0014 ENSCINP00000005410.3 Ciona intestinalis 64 1e-161 567
WERAM-Drm-0018 FBpp0073173 Drosophila melanogaster 62 2e-161 566
WERAM-Chs-0011 ENSCSAP00000016960.1 Chlorocebus sabaeus 68 7e-161 564
WERAM-Asm-0120 ENSAMXP00000012237.1 Astyanax mexicanus 66 1e-160 563
WERAM-Pat-0210 ENSPTRP00000060659.1 Pan troglodytes 68 1e-160 563
WERAM-Anp-0136 ENSAPLP00000014652.1 Anas platyrhynchos 66 1e-160 563
WERAM-Sus-0201 ENSSSCP00000023024.1 Sus scrofa 65 2e-160 563
WERAM-Meg-0047 ENSMGAP00000004521.2 Meleagris gallopavo 67 2e-160 563
WERAM-Leo-0014 ENSLOCP00000002993.1 Lepisosteus oculatus 68 2e-160 562
WERAM-Xet-0037 ENSXETP00000011480.3 Xenopus tropicalis 67 6e-160 561
WERAM-Eqc-0125 ENSECAP00000014039.1 Equus caballus 67 7e-160 561
WERAM-Ect-0064 ENSETEP00000006883.1 Echinops telfairi 65 2e-159 560
WERAM-Fia-0139 ENSFALP00000011453.1 Ficedula albicollis 65 3e-159 559
WERAM-Ict-0111 ENSSTOP00000011457.2 Ictidomys tridecemlineatus 65 3e-159 558
WERAM-Mod-0165 ENSMODP00000022264.3 Monodelphis domestica 65 3e-159 558
WERAM-Paa-0030 ENSPANP00000015145.1 Papio anubis 65 4e-159 558
WERAM-Tru-0006 TRIUR3_03674-P1 Triticum urartu 79 1e-158 556
WERAM-Fec-0156 ENSFCAP00000015379.2 Felis catus 64 2e-154 543
WERAM-Ere-0068 ENSEEUP00000005465.1 Erinaceus europaeus 65 6e-154 541
WERAM-Sah-0134 ENSSHAP00000014467.1 Sarcophilus harrisii 65 7e-154 541
WERAM-Cae-0005 C53A5.3 Caenorhabditis elegans 62 4e-153 538
WERAM-Cym-0014 CMJ129CT Cyanidioschyzon merolae 64 1e-151 533
WERAM-Tas-0085 ENSTSYP00000008588.1 Tarsius syrichta 65 2e-151 533
WERAM-Asni-0020 CADANGAP00005938 Aspergillus niger 57 1e-150 530
WERAM-Asf-0020 CADAFLAP00008921 Aspergillus flavus 58 2e-150 529
WERAM-Trv-0003 EHK19072 Trichoderma virens 59 4e-150 528
WERAM-Scs-0023 EDO03342 Sclerotinia sclerotiorum 58 4e-150 528
WERAM-Coi-0024 EAS33504 Coccidioides immitis 60 5e-150 528
WERAM-Asn-0024 CADANIAP00005952 Aspergillus nidulans 57 4e-149 525
WERAM-Asc-0037 CADACLAP00008612 Aspergillus clavatus 57 4e-149 525
WERAM-Map-0015 MAPG_05105T0 Magnaporthe poae 59 5e-149 525
WERAM-Asfu-0015 CADAFUAP00003503 Aspergillus fumigatus 58 8e-149 524
WERAM-Lac-0087 ENSLACP00000011092.1 Latimeria chalumnae 59 8e-149 524
WERAM-Gag-0026 GGTG_08607T0 Gaeumannomyces graminis 58 1e-148 524
WERAM-Ved-0020 EGY15146 Verticillium dahliae 53 1e-148 524
Created Date 25-Jun-2016