WERAM Information


Tag Content
WERAM ID WERAM-Bro-0004
Ensembl Protein ID Bo1g008110.1
Gene Name hda14
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo1g008110 Bo1g008110.1 Bo1g008110.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 2.10e-95 321.2 377 695
HDAC Class-I 9.60e-28 99.2 223 663
Organism Brassica oleracea
Domain Profile
  HDAC Class-II

   class-2.txt  13 hqaleenkekhpEkpeRiqailsrlqeagllek.....leelka.rkatkeelqlvHseehvelletae.klekeelesltvdsdsiylesksikaa 102
++al +nk++hpE+++R+ ai+++l++++l++k ++el++ ++at e++++vH++++v le+a+ +++++ l + + s+ +y++s++++ +
Bo1g008110.1 377 SAALGHNKDSHPECSARVPAIVTALEKNELTPKfrgseILELANfKNATIEDIANVHEKAYVLGLEKAMdQASDSGLI-FIEGSGPTYATSTTFQDS 472
556778999***********************555555777777699*********************9666666666.89**************** PP
class-2.txt 103 rlavGavlelvdkvlkgelkn.....gfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylSlH 194
+a+Ga + lvd+v++++ + gfa++RPPGHHa ++ +mGFC+f nva+aa+++q+ + +k+++i+D+DvHhGnGt+++f +dp++++lS+H
Bo1g008110.1 473 LTAAGAGMALVDSVVAASRNSldpptGFALIRPPGHHAVPKGPMGFCVFGNVAIAARHAQSAHGLKRVFIIDFDVHHGNGTNDAFSEDPDIFFLSTH 569
***************99965588899*********************************************************************** PP
class-2.txt 195 RydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkqllkl 291
++gs +p g+g+++++g+gkgeg+++N++++gg+ gd ++ af+e+++p++++FkPdl+lvsaG+Da+ dpl++l++t+ +y +l+k++++l
Bo1g008110.1 570 --QDGS-YP--GTGKISDIGKGKGEGTTLNLPLPGGS-GDIAMRSAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDIKQL 660
..9***.78..8***********************99.*********************************************************** PP
class-2.txt 292 ....aggrvvlvlEGGynlkaiaeaveavvkaLlg 322
+ggr+v++lEGGynl++++++v+ +++aLlg
Bo1g008110.1 661 akevCGGRCVFFLEGGYNLESLSASVADSFRALLG 695
9999*****************************96 PP

  HDAC Class-I

   class-1.txt 140 sGfcyvnDiv 149
Gfcy D v
Bo1g008110.1 223 GGFCYTEDNV 232
5888888876 PP
class-1.txt 30 theLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfey..cqlitGasleaakkLnkkead.. 122
+eL ++ s+ le+ + k+a+ e+++++h+++y+ l+k + +++ ++ P + + + + +Ga ++ ++ + +++
Bo1g008110.1 403 KNELTPKFRGSEILELANFKNATIEDIANVHEKAYVLGLEKAMDQASDSG-----LIFIEGSGPTYATSTTFqdSLTAAGAGMALVDSVVAASRNsl 494
45677788888899999999999999999999999999988765554433.....345788888776655551155677888777766655443311 PP
class-1.txt 123 .....iainwaGGlhhakkseasGfcyvnDivlailellkkh..krvlyididlhhGDgveeafyttdrvmtvsfhkygeeffPgtGdlsdvgaekg 212
a+ hha + Gfc ++ +a + + h krv id+d+hhG+g ++af++ ++ +s h+ g +PgtG++sd+g++kg
Bo1g008110.1 495 dpptgFALIRP-PGHHAVPKGPMGFCVFGNVAIAARHAQSAHglKRVFIIDFDVHHGNGTNDAFSEDPDIFFLSTHQDGS--YPGTGKISDIGKGKG 588
11111333333.349*******************99988754339*******************************9998..9************** PP
class-1.txt 213 kyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlp 287
++n+Pl g D +++ f+++i + +++f+P+ +++ G D+ D+l++ ++++ ++ + k +k+ +
Bo1g008110.1 589 EGTTLNLPLPGGSGDIAMRSAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDIKQLAKE 663
*********************************************************998887777777776443 PP

Protein Sequence
(Fasta)
MAFSFSLTSP SPSSTLSYSN IHQFPNPSSS FPVSLSVSSP SNTRRHLRLS ITSALNPQTK 60
KASTGSGGTN KKRKKKGKSV NLEENWKLRE ADAVLEEDYD NDDDGSLANS PPTIPKPPAG 120
FVIDETGRVL MASKKRIATV VDPTNNSPLD CVIRRVFTSS KGEDCMLLCP VDTPVQILKS 180
TNIDGWSAVS DEEVESLLPA AAYALAKIHM HLVHSGFCYT ARGGFCYTED NVFDFRTGNN 240
LYDGQDVEGL PTEGVEITCF HLDGSHYMVY TPSDPLLFVA AKDPNGLLQI ADDELLDDPA 300
VISAIDEETE FNALVVRSGE VSGIRGFNLR NGLSLWRKHL VKQNKGAYIC CSFSTDNDPL 360
LPSIQQLTNA RVIYSVSAAL GHNKDSHPEC SARVPAIVTA LEKNELTPKF RGSEILELAN 420
FKNATIEDIA NVHEKAYVLG LEKAMDQASD SGLIFIEGSG PTYATSTTFQ DSLTAAGAGM 480
ALVDSVVAAS RNSLDPPTGF ALIRPPGHHA VPKGPMGFCV FGNVAIAARH AQSAHGLKRV 540
FIIDFDVHHG NGTNDAFSED PDIFFLSTHQ DGSYPGTGKI SDIGKGKGEG TTLNLPLPGG 600
SGDIAMRSAF EEIIVPCVQR FKPDLILVSA GYDAHVLDPL ANLQFTTGTY YSLAKDIKQL 660
AKEVCGGRCV FFLEGGYNLE SLSASVADSF RALLGEESLA SEFDNPAYLY DEPMRKVHDA 720
IERAKSIHCL
Nucleotide Sequence
(Fasta)
ATGGCTTTCT CATTCTCCTT AACTTCGCCT TCACCAAGCT CGACTCTTTC CTATTCCAAC 60
ATCCACCAAT TCCCAAACCC GTCTTCTTCA TTTCCCGTTT CGTTATCTGT CTCGTCACCG 120
AGCAACACCC GCCGCCATCT TCGTCTCTCC ATCACCTCCG CGTTGAATCC GCAGACGAAG 180
AAAGCTTCAA CGGGTAGTGG TGGGACCAAC AAGAAACGGA AGAAGAAGGG GAAAAGTGTC 240
AACCTTGAGG AGAATTGGAA ATTGAGAGAA GCAGATGCTG TTCTTGAGGA AGATTATGAT 300
AATGATGATG ATGGTTCTCT TGCGAACTCT CCTCCTACCA TACCTAAGCC ACCTGCTGGG 360
TTCGTTATTG ATGAGACTGG TAGAGTTCTT ATGGCTTCTA AGAAGCGAAT CGCCACTGTG 420
GTTGATCCGA CAAACAATAG TCCTTTGGAT TGTGTAATAA GACGAGTGTT TACGAGTAGT 480
AAAGGAGAGG ACTGTATGCT TCTTTGCCCT GTTGATACGC CAGTTCAGAT TTTGAAGAGC 540
ACAAACATAG ATGGATGGTC AGCTGTTAGT GATGAAGAGG TTGAATCTCT TCTTCCTGCT 600
GCTGCTTATG CTCTTGCAAA GATCCATATG CATCTTGTAC ACAGCGGATT CTGTTACACT 660
GCAAGGGGAG GCTTTTGCTA CACTGAAGAT AATGTCTTCG ATTTTCGCAC AGGCAACAAC 720
CTCTATGATG GCCAAGATGT TGAAGGTTTG CCAACTGAAG GGGTTGAGAT TACATGTTTT 780
CATCTGGATG GATCACACTA TATGGTCTAC ACGCCTTCAG ATCCACTTCT CTTTGTTGCT 840
GCCAAGGATC CGAATGGGCT GCTGCAAATT GCTGATGATG AGCTCCTAGA CGATCCAGCC 900
GTGATCAGCG CCATAGACGA GGAAACAGAA TTCAATGCAT TGGTGGTACG AAGTGGTGAA 960
GTTTCTGGGA TCAGAGGTTT TAATTTGCGG AATGGATTGA GTTTGTGGAG AAAACATCTT 1020
GTGAAACAAA ACAAGGGAGC TTACATTTGT TGCTCGTTCA GTACAGACAA CGATCCCCTG 1080
TTACCTTCTA TCCAGCAGTT AACCAATGCT CGTGTCATCT ATAGTGTATC TGCCGCACTG 1140
GGTCATAACA AGGACTCACA TCCGGAATGC AGCGCAAGAG TTCCTGCCAT TGTCACAGCT 1200
CTTGAGAAGA ATGAGCTCAC TCCTAAGTTC CGTGGCTCGG AGATTCTTGA ACTTGCAAAT 1260
TTCAAGAATG CGACAATAGA AGACATTGCA AATGTTCACG AGAAGGCTTA TGTCTTAGGC 1320
CTGGAGAAGG CAATGGATCA AGCTTCAGAT TCAGGACTAA TTTTCATTGA AGGCTCTGGA 1380
CCAACATACG CCACTTCAAC GACATTCCAA GATTCACTTA CCGCAGCCGG CGCTGGAATG 1440
GCTTTAGTTG ATTCAGTGGT CGCAGCATCA AGAAACAGCT TGGACCCTCC AACTGGCTTT 1500
GCGTTGATAA GACCTCCAGG ACACCACGCT GTGCCAAAAG GCCCAATGGG TTTCTGCGTT 1560
TTTGGTAATG TGGCAATCGC AGCTCGCCAC GCCCAAAGTG CACATGGTCT GAAACGCGTC 1620
TTCATTATTG ACTTCGATGT TCACCATGGA AATGGCACAA ACGATGCGTT TTCTGAGGAT 1680
CCTGATATAT TCTTTTTGTC AACTCATCAG GATGGAAGCT ATCCTGGAAC AGGGAAGATA 1740
AGTGACATAG GCAAAGGAAA AGGTGAAGGC ACCACTCTGA ACTTACCTTT ACCTGGAGGA 1800
TCAGGTGATA TTGCAATGAG AAGTGCTTTT GAAGAAATCA TTGTTCCTTG TGTTCAACGT 1860
TTCAAGCCAG ATCTTATTCT TGTTTCTGCC GGGTATGATG CTCATGTCCT GGATCCACTA 1920
GCGAATCTGC AGTTCACAAC CGGAACATAC TACTCATTGG CGAAAGATAT AAAACAGTTA 1980
GCAAAAGAAG TATGTGGAGG GCGTTGTGTG TTCTTCCTGG AAGGAGGATA CAATCTTGAG 2040
TCACTTTCTG CATCAGTAGC AGACTCGTTT CGAGCGTTGC TTGGGGAAGA AAGCTTGGCA 2100
TCAGAGTTCG ATAACCCAGC GTACTTGTAT GATGAACCGA TGAGGAAGGT GCATGATGCT 2160
ATTGAGAGAG CCAAAAGCAT TCATTGTTTA TAA 2194
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0061 Bra011444.1-P Brassica rapa 91 0.0 823
WERAM-Arl-0142 scaffold_700814.1 Arabidopsis lyrata 88 0.0 749
WERAM-Art-0110 AT4G33470.1 Arabidopsis thaliana 86 0.0 744
WERAM-Pot-0060 POPTR_0005s06520.1 Populus trichocarpa 74 2e-179 626
WERAM-Viv-0021 VIT_04s0044g01510.t01 Vitis vinifera 72 1e-174 610
WERAM-Met-0183 AET04758 Medicago truncatula 71 7e-174 608
WERAM-Glm-0050 GLYMA05G32600.1 Glycine max 74 1e-165 580
WERAM-Mua-0145 GSMUA_AchrUn_randomP00520_001 Musa acuminata 71 2e-163 573
WERAM-Sob-0054 Sb03g038950.1 Sorghum bicolor 73 2e-161 566
WERAM-Prp-0071 EMJ12704 Prunus persica 76 1e-160 564
WERAM-Brd-0117 BRADI4G40960.1 Brachypodium distachyon 68 2e-160 563
WERAM-Tra-0217 Traes_5BS_F36388166.1 Triticum aestivum 67 8e-160 561
WERAM-Orb-0120 OBART12G04910.1 Oryza barthii 65 5e-159 558
WERAM-Ors-0108 OS12T0182700-01 Oryza sativa 65 6e-159 558
WERAM-Orp-0110 OPUNC12G04860.1 Oryza punctata 65 7e-159 558
WERAM-Orbr-0123 OB12G14780.1 Oryza brachyantha 71 1e-158 557
WERAM-Org-0113 ORGLA12G0047100.1 Oryza glaberrima 65 2e-158 556
WERAM-Ori-0128 BGIOSGA037104-PA Oryza indica 65 2e-158 556
WERAM-Zem-0142 GRMZM2G456473_P01 Zea mays 71 3e-158 556
WERAM-Orni-0103 ONIVA09G16260.1 Oryza nivara 65 3e-158 556
WERAM-Sei-0036 Si010171m Setaria italica 71 8e-158 555
WERAM-Lep-0114 LPERR12G04530.1 Leersia perrieri 66 1e-157 554
WERAM-Orr-0120 ORUFI12G05690.1 Oryza rufipogon 62 3e-155 546
WERAM-Php-0127 PP1S85_154V6.1 Physcomitrella patens 64 4e-155 546
WERAM-Orl-0008 KN538685.1_FGP052 Oryza longistaminata 62 9e-155 545
WERAM-Orgl-0115 OGLUM12G05720.1 Oryza glumaepatula 62 1e-154 544
WERAM-Orm-0105 OMERI12G03370.1 Oryza meridionalis 59 1e-152 538
WERAM-Amt-0065 ERN18144 Amborella trichopoda 66 2e-146 516
WERAM-Tru-0036 TRIUR3_18154-P1 Triticum urartu 64 4e-142 502
WERAM-Sem-0047 EFJ16002 Selaginella moellendorffii 63 6e-126 449
WERAM-Sol-0006 Solyc01g009110.2.1 Solanum lycopersicum 79 3e-123 440
WERAM-Thc-0007 EOX92582 Theobroma cacao 82 5e-121 432
WERAM-Osl-0036 ABP01312 Ostreococcus lucimarinus 52 3e-98 357
WERAM-Chr-0006 EDP01653 Chlamydomonas reinhardtii 52 4e-53 207
WERAM-Aim-0036 ENSAMEP00000002564.1 Ailuropoda melanoleuca 36 2e-49 194
WERAM-Myl-0003 ENSMLUP00000000417.2 Myotis lucifugus 39 2e-48 191
WERAM-Tut-0141 ENSTTRP00000011664.1 Tursiops truncatus 38 3e-48 191
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 36 3e-48 191
WERAM-Caf-0004 ENSCAFP00000000979.4 Canis familiaris 37 3e-48 190
WERAM-Mup-0023 ENSMPUP00000002307.1 Mustela putorius furo 35 6e-48 189
WERAM-Cae-0060 F41H10.6b Caenorhabditis elegans 38 7e-48 189
WERAM-Bot-0106 ENSBTAP00000014602.4 Bos taurus 38 3e-47 187
WERAM-Eqc-0086 ENSECAP00000010704.1 Equus caballus 38 3e-47 187
WERAM-Fec-0119 ENSFCAP00000011049.3 Felis catus 36 6e-47 186
WERAM-Ere-0078 ENSEEUP00000006690.1 Erinaceus europaeus 34 1e-46 186
WERAM-Gog-0159 ENSGGOP00000014095.2 Gorilla gorilla 36 1e-46 185
WERAM-Pat-0122 ENSPTRP00000025053.4 Pan troglodytes 36 2e-46 185
WERAM-Chs-0051 ENSCSAP00000001305.1 Chlorocebus sabaeus 37 2e-46 185
WERAM-Hos-0058 ENSP00000216271.5 Homo sapiens 36 2e-46 185
WERAM-Nol-0005 ENSNLEP00000000692.2 Nomascus leucogenys 36 5e-46 183
WERAM-Sus-0012 ENSSSCP00000001039.2 Sus scrofa 36 5e-46 183
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 34 6e-46 183
WERAM-Paa-0009 ENSPANP00000013655.1 Papio anubis 36 8e-46 182
WERAM-Cap-0164 ENSCPOP00000013386.2 Cavia porcellus 34 1e-45 182
WERAM-Mum-0213 ENSMUSP00000080832.5 Mus musculus 35 1e-45 182
WERAM-Pof-0042 ENSPFOP00000003781.2 Poecilia formosa 34 1e-45 182
WERAM-Otg-0149 ENSOGAP00000012689.2 Otolemur garnettii 35 2e-45 181
WERAM-Ten-0061 ENSTNIP00000000291.1 Tetraodon nigroviridis 33 2e-45 181
WERAM-Orn-0049 ENSONIP00000005635.1 Oreochromis niloticus 34 2e-45 181
WERAM-Ict-0132 ENSSTOP00000013675.2 Ictidomys tridecemlineatus 34 2e-45 181
WERAM-Cag-0018 CAG60803 Candida glabrata 35 3e-45 181
WERAM-Tar-0145 ENSTRUP00000031264.1 Takifugu rubripes 34 4e-45 180
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 35 4e-45 180
WERAM-Ran-0135 ENSRNOP00000027622.5 Rattus norvegicus 35 5e-45 180
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 35 7e-45 179
WERAM-Sac-0037 YNL021W Saccharomyces cerevisiae 34 1e-44 179
WERAM-Caa-0034 KGT64501 Candida albicans 34 1e-44 179
WERAM-Loa-0107 ENSLAFP00000009167.2 Loxodonta africana 35 2e-44 178
WERAM-Gaa-0079 ENSGACP00000010554.1 Gasterosteus aculeatus 33 2e-44 178
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 36 2e-44 178
WERAM-Anc-0012 ENSACAP00000019114.1 Anolis carolinensis 35 2e-44 178
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 35 3e-44 177
WERAM-Sah-0095 ENSSHAP00000011018.1 Sarcophilus harrisii 34 4e-44 177
WERAM-Orc-0191 ENSOCUP00000020861.2 Oryctolagus cuniculus 36 5e-44 177
WERAM-Xim-0050 ENSXMAP00000004607.1 Xiphophorus maculatus 33 6e-44 176
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 33 1e-43 175
WERAM-Asm-0146 ENSAMXP00000013789.1 Astyanax mexicanus 33 1e-43 175
WERAM-Gaga-0049 ENSGALP00000033098.3 Gallus gallus 34 2e-43 175
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 33 2e-43 175
WERAM-Pug-0031 EFP89333 Puccinia graminis 32 2e-43 174
WERAM-Orla-0013 ENSORLP00000001341.1 Oryzias latipes 33 2e-43 174
WERAM-Anp-0035 ENSAPLP00000004005.1 Anas platyrhynchos 34 2e-43 174
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 34 3e-43 174
WERAM-Leo-0130 ENSLOCP00000016135.1 Lepisosteus oculatus 34 3e-43 174
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 33 3e-43 174
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 34 3e-43 174
WERAM-Ect-0100 ENSETEP00000011415.1 Echinops telfairi 39 3e-43 174
WERAM-Pes-0174 ENSPSIP00000020522.1 Pelodiscus sinensis 33 4e-43 174
WERAM-Lac-0157 ENSLACP00000018610.1 Latimeria chalumnae 32 6e-43 173
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 35 6e-43 173
WERAM-Caj-0009 ENSCJAP00000001947.2 Callithrix jacchus 34 6e-43 173
WERAM-Poa-0162 ENSPPYP00000019901.2 Pongo abelii 34 7e-43 173
WERAM-Mam-0095 ENSMMUP00000014626.2 Macaca mulatta 34 8e-43 172
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 33 8e-43 172
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 34 9e-43 172
WERAM-Asg-0010 AAS51704 Ashbya gossypii 34 1e-42 172
WERAM-Kop-0012 CAY68916 Komagataella pastoris 33 1e-42 172
WERAM-Ova-0212 ENSOARP00000021243.1 Ovis aries 35 1e-42 172
WERAM-Usm-0012 UM02102P0 Ustilago maydis 31 2e-42 171
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 35 2e-42 171
WERAM-Mao-0002 MGG_01076T0 Magnaporthe oryzae 35 3e-42 171
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 34 3e-42 171
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 34 3e-42 171
WERAM-Mae-0029 ENSMEUP00000002095.1 Macropus eugenii 35 4e-42 170
WERAM-Coi-0028 EAS30926 Coccidioides immitis 34 7e-42 169
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 33 1e-41 169
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 34 1e-41 169
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 35 2e-41 168
WERAM-Map-0033 MAPG_10880T0 Magnaporthe poae 33 2e-41 168
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 34 3e-41 167
WERAM-Gam-0051 ENSGMOP00000005244.1 Gadus morhua 34 3e-41 167
WERAM-Nec-0012 EFNCRP00000001681 Neurospora crassa 33 3e-41 167
WERAM-Chg-0033 EAQ86725 Chaetomium globosum 33 3e-41 167
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 35 4e-41 167
Created Date 25-Jun-2016