Tag |
Content |
WERAM ID |
WERAM-Bro-0004 |
Ensembl Protein ID |
Bo1g008110.1 |
Gene Name |
hda14 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
2.10e-95 |
321.2 |
377 |
695 |
HDAC |
Class-I |
9.60e-28 |
99.2 |
223 |
663 |
|
Organism |
Brassica oleracea |
Domain Profile |
HDAC Class-II
class-2.txt 13 hqaleenkekhpEkpeRiqailsrlqeagllek.....leelka.rkatkeelqlvHseehvelletae.klekeelesltvdsdsiylesksikaa 102 ++al +nk++hpE+++R+ ai+++l++++l++k ++el++ ++at e++++vH++++v le+a+ +++++ l + + s+ +y++s++++ + Bo1g008110.1 377 SAALGHNKDSHPECSARVPAIVTALEKNELTPKfrgseILELANfKNATIEDIANVHEKAYVLGLEKAMdQASDSGLI-FIEGSGPTYATSTTFQDS 472 556778999***********************555555777777699*********************9666666666.89**************** PP class-2.txt 103 rlavGavlelvdkvlkgelkn.....gfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeifykdpkvlylSlH 194 +a+Ga + lvd+v++++ + gfa++RPPGHHa ++ +mGFC+f nva+aa+++q+ + +k+++i+D+DvHhGnGt+++f +dp++++lS+H Bo1g008110.1 473 LTAAGAGMALVDSVVAASRNSldpptGFALIRPPGHHAVPKGPMGFCVFGNVAIAARHAQSAHGLKRVFIIDFDVHHGNGTNDAFSEDPDIFFLSTH 569 ***************99965588899*********************************************************************** PP class-2.txt 195 RydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvtakcyatltkqllkl 291 ++gs +p g+g+++++g+gkgeg+++N++++gg+ gd ++ af+e+++p++++FkPdl+lvsaG+Da+ dpl++l++t+ +y +l+k++++l Bo1g008110.1 570 --QDGS-YP--GTGKISDIGKGKGEGTTLNLPLPGGS-GDIAMRSAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDIKQL 660 ..9***.78..8***********************99.*********************************************************** PP class-2.txt 292 ....aggrvvlvlEGGynlkaiaeaveavvkaLlg 322 +ggr+v++lEGGynl++++++v+ +++aLlg Bo1g008110.1 661 akevCGGRCVFFLEGGYNLESLSASVADSFRALLG 695 9999*****************************96 PP
HDAC Class-I
class-1.txt 140 sGfcyvnDiv 149 Gfcy D v Bo1g008110.1 223 GGFCYTEDNV 232 5888888876 PP class-1.txt 30 theLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfey..cqlitGasleaakkLnkkead.. 122 +eL ++ s+ le+ + k+a+ e+++++h+++y+ l+k + +++ ++ P + + + + +Ga ++ ++ + +++ Bo1g008110.1 403 KNELTPKFRGSEILELANFKNATIEDIANVHEKAYVLGLEKAMDQASDSG-----LIFIEGSGPTYATSTTFqdSLTAAGAGMALVDSVVAASRNsl 494 45677788888899999999999999999999999999988765554433.....345788888776655551155677888777766655443311 PP class-1.txt 123 .....iainwaGGlhhakkseasGfcyvnDivlailellkkh..krvlyididlhhGDgveeafyttdrvmtvsfhkygeeffPgtGdlsdvgaekg 212 a+ hha + Gfc ++ +a + + h krv id+d+hhG+g ++af++ ++ +s h+ g +PgtG++sd+g++kg Bo1g008110.1 495 dpptgFALIRP-PGHHAVPKGPMGFCVFGNVAIAARHAQSAHglKRVFIIDFDVHHGNGTNDAFSEDPDIFFLSTHQDGS--YPGTGKISDIGKGKG 588 11111333333.349*******************99988754339*******************************9998..9************** PP class-1.txt 213 kyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlp 287 ++n+Pl g D +++ f+++i + +++f+P+ +++ G D+ D+l++ ++++ ++ + k +k+ + Bo1g008110.1 589 EGTTLNLPLPGGSGDIAMRSAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDIKQLAKE 663 *********************************************************998887777777776443 PP
|
Protein Sequence (Fasta) | MAFSFSLTSP SPSSTLSYSN IHQFPNPSSS FPVSLSVSSP SNTRRHLRLS ITSALNPQTK 60 KASTGSGGTN KKRKKKGKSV NLEENWKLRE ADAVLEEDYD NDDDGSLANS PPTIPKPPAG 120 FVIDETGRVL MASKKRIATV VDPTNNSPLD CVIRRVFTSS KGEDCMLLCP VDTPVQILKS 180 TNIDGWSAVS DEEVESLLPA AAYALAKIHM HLVHSGFCYT ARGGFCYTED NVFDFRTGNN 240 LYDGQDVEGL PTEGVEITCF HLDGSHYMVY TPSDPLLFVA AKDPNGLLQI ADDELLDDPA 300 VISAIDEETE FNALVVRSGE VSGIRGFNLR NGLSLWRKHL VKQNKGAYIC CSFSTDNDPL 360 LPSIQQLTNA RVIYSVSAAL GHNKDSHPEC SARVPAIVTA LEKNELTPKF RGSEILELAN 420 FKNATIEDIA NVHEKAYVLG LEKAMDQASD SGLIFIEGSG PTYATSTTFQ DSLTAAGAGM 480 ALVDSVVAAS RNSLDPPTGF ALIRPPGHHA VPKGPMGFCV FGNVAIAARH AQSAHGLKRV 540 FIIDFDVHHG NGTNDAFSED PDIFFLSTHQ DGSYPGTGKI SDIGKGKGEG TTLNLPLPGG 600 SGDIAMRSAF EEIIVPCVQR FKPDLILVSA GYDAHVLDPL ANLQFTTGTY YSLAKDIKQL 660 AKEVCGGRCV FFLEGGYNLE SLSASVADSF RALLGEESLA SEFDNPAYLY DEPMRKVHDA 720 IERAKSIHCL Protein Fasta Sequence
>Bo1g008110.1|Class-I|Brassica oleracea MAFSFSLTSPSPSSTLSYSNIHQFPNPSSSFPVSLSVSSPSNTRRHLRLSITSALNPQTKKASTGSGGTNKKRKKKGKSVNLEENWKLREADAVLEEDYDNDDDGSLANSPPTIPKPPAGFVIDETGRVLMASKKRIATVVDPTNNSPLDCVIRRVFTSSKGEDCMLLCPVDTPVQILKSTNIDGWSAVSDEEVESLLPAAAYALAKIHMHLVHSGFCYTARGGFCYTEDNVFDFRTGNNLYDGQDVEGLPTEGVEITCFHLDGSHYMVYTPSDPLLFVAAKDPNGLLQIADDELLDDPAVISAIDEETEFNALVVRSGEVSGIRGFNLRNGLSLWRKHLVKQNKGAYICCSFSTDNDPLLPSIQQLTNARVIYSVSAALGHNKDSHPECSARVPAIVTALEKNELTPKFRGSEILELANFKNATIEDIANVHEKAYVLGLEKAMDQASDSGLIFIEGSGPTYATSTTFQDSLTAAGAGMALVDSVVAASRNSLDPPTGFALIRPPGHHAVPKGPMGFCVFGNVAIAARHAQSAHGLKRVFIIDFDVHHGNGTNDAFSEDPDIFFLSTHQDGSYPGTGKISDIGKGKGEGTTLNLPLPGGSGDIAMRSAFEEIIVPCVQRFKPDLILVSAGYDAHVLDPLANLQFTTGTYYSLAKDIKQLAKEVCGGRCVFFLEGGYNLESLSASVADSFRALLGEESLASEFDNPAYLYDEPMRKVHDAIERAKSIHCL
|
Nucleotide Sequence (Fasta) | ATGGCTTTCT CATTCTCCTT AACTTCGCCT TCACCAAGCT CGACTCTTTC CTATTCCAAC 60 ATCCACCAAT TCCCAAACCC GTCTTCTTCA TTTCCCGTTT CGTTATCTGT CTCGTCACCG 120 AGCAACACCC GCCGCCATCT TCGTCTCTCC ATCACCTCCG CGTTGAATCC GCAGACGAAG 180 AAAGCTTCAA CGGGTAGTGG TGGGACCAAC AAGAAACGGA AGAAGAAGGG GAAAAGTGTC 240 AACCTTGAGG AGAATTGGAA ATTGAGAGAA GCAGATGCTG TTCTTGAGGA AGATTATGAT 300 AATGATGATG ATGGTTCTCT TGCGAACTCT CCTCCTACCA TACCTAAGCC ACCTGCTGGG 360 TTCGTTATTG ATGAGACTGG TAGAGTTCTT ATGGCTTCTA AGAAGCGAAT CGCCACTGTG 420 GTTGATCCGA CAAACAATAG TCCTTTGGAT TGTGTAATAA GACGAGTGTT TACGAGTAGT 480 AAAGGAGAGG ACTGTATGCT TCTTTGCCCT GTTGATACGC CAGTTCAGAT TTTGAAGAGC 540 ACAAACATAG ATGGATGGTC AGCTGTTAGT GATGAAGAGG TTGAATCTCT TCTTCCTGCT 600 GCTGCTTATG CTCTTGCAAA GATCCATATG CATCTTGTAC ACAGCGGATT CTGTTACACT 660 GCAAGGGGAG GCTTTTGCTA CACTGAAGAT AATGTCTTCG ATTTTCGCAC AGGCAACAAC 720 CTCTATGATG GCCAAGATGT TGAAGGTTTG CCAACTGAAG GGGTTGAGAT TACATGTTTT 780 CATCTGGATG GATCACACTA TATGGTCTAC ACGCCTTCAG ATCCACTTCT CTTTGTTGCT 840 GCCAAGGATC CGAATGGGCT GCTGCAAATT GCTGATGATG AGCTCCTAGA CGATCCAGCC 900 GTGATCAGCG CCATAGACGA GGAAACAGAA TTCAATGCAT TGGTGGTACG AAGTGGTGAA 960 GTTTCTGGGA TCAGAGGTTT TAATTTGCGG AATGGATTGA GTTTGTGGAG AAAACATCTT 1020 GTGAAACAAA ACAAGGGAGC TTACATTTGT TGCTCGTTCA GTACAGACAA CGATCCCCTG 1080 TTACCTTCTA TCCAGCAGTT AACCAATGCT CGTGTCATCT ATAGTGTATC TGCCGCACTG 1140 GGTCATAACA AGGACTCACA TCCGGAATGC AGCGCAAGAG TTCCTGCCAT TGTCACAGCT 1200 CTTGAGAAGA ATGAGCTCAC TCCTAAGTTC CGTGGCTCGG AGATTCTTGA ACTTGCAAAT 1260 TTCAAGAATG CGACAATAGA AGACATTGCA AATGTTCACG AGAAGGCTTA TGTCTTAGGC 1320 CTGGAGAAGG CAATGGATCA AGCTTCAGAT TCAGGACTAA TTTTCATTGA AGGCTCTGGA 1380 CCAACATACG CCACTTCAAC GACATTCCAA GATTCACTTA CCGCAGCCGG CGCTGGAATG 1440 GCTTTAGTTG ATTCAGTGGT CGCAGCATCA AGAAACAGCT TGGACCCTCC AACTGGCTTT 1500 GCGTTGATAA GACCTCCAGG ACACCACGCT GTGCCAAAAG GCCCAATGGG TTTCTGCGTT 1560 TTTGGTAATG TGGCAATCGC AGCTCGCCAC GCCCAAAGTG CACATGGTCT GAAACGCGTC 1620 TTCATTATTG ACTTCGATGT TCACCATGGA AATGGCACAA ACGATGCGTT TTCTGAGGAT 1680 CCTGATATAT TCTTTTTGTC AACTCATCAG GATGGAAGCT ATCCTGGAAC AGGGAAGATA 1740 AGTGACATAG GCAAAGGAAA AGGTGAAGGC ACCACTCTGA ACTTACCTTT ACCTGGAGGA 1800 TCAGGTGATA TTGCAATGAG AAGTGCTTTT GAAGAAATCA TTGTTCCTTG TGTTCAACGT 1860 TTCAAGCCAG ATCTTATTCT TGTTTCTGCC GGGTATGATG CTCATGTCCT GGATCCACTA 1920 GCGAATCTGC AGTTCACAAC CGGAACATAC TACTCATTGG CGAAAGATAT AAAACAGTTA 1980 GCAAAAGAAG TATGTGGAGG GCGTTGTGTG TTCTTCCTGG AAGGAGGATA CAATCTTGAG 2040 TCACTTTCTG CATCAGTAGC AGACTCGTTT CGAGCGTTGC TTGGGGAAGA AAGCTTGGCA 2100 TCAGAGTTCG ATAACCCAGC GTACTTGTAT GATGAACCGA TGAGGAAGGT GCATGATGCT 2160 ATTGAGAGAG CCAAAAGCAT TCATTGTTTA TAA
2194Nucleotide Fasta Sequence
>Bo1g008110.1|Class-I|Brassica oleracea ATGGCTTTCTCATTCTCCTTAACTTCGCCTTCACCAAGCTCGACTCTTTCCTATTCCAACATCCACCAATTCCCAAACCCGTCTTCTTCATTTCCCGTTTCGTTATCTGTCTCGTCACCGAGCAACACCCGCCGCCATCTTCGTCTCTCCATCACCTCCGCGTTGAATCCGCAGACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGAAGAAGGGGAAAAGTGTCAACCTTGAGGAGAATTGGAAATTGAGAGAAGCAGATGCTGTTCTTGAGGAAGATTATGATAATGATGATGATGGTTCTCTTGCGAACTCTCCTCCTACCATACCTAAGCCACCTGCTGGGTTCGTTATTGATGAGACTGGTAGAGTTCTTATGGCTTCTAAGAAGCGAATCGCCACTGTGGTTGATCCGACAAACAATAGTCCTTTGGATTGTGTAATAAGACGAGTGTTTACGAGTAGTAAAGGAGAGGACTGTATGCTTCTTTGCCCTGTTGATACGCCAGTTCAGATTTTGAAGAGCACAAACATAGATGGATGGTCAGCTGTTAGTGATGAAGAGGTTGAATCTCTTCTTCCTGCTGCTGCTTATGCTCTTGCAAAGATCCATATGCATCTTGTACACAGCGGATTCTGTTACACTGCAAGGGGAGGCTTTTGCTACACTGAAGATAATGTCTTCGATTTTCGCACAGGCAACAACCTCTATGATGGCCAAGATGTTGAAGGTTTGCCAACTGAAGGGGTTGAGATTACATGTTTTCATCTGGATGGATCACACTATATGGTCTACACGCCTTCAGATCCACTTCTCTTTGTTGCTGCCAAGGATCCGAATGGGCTGCTGCAAATTGCTGATGATGAGCTCCTAGACGATCCAGCCGTGATCAGCGCCATAGACGAGGAAACAGAATTCAATGCATTGGTGGTACGAAGTGGTGAAGTTTCTGGGATCAGAGGTTTTAATTTGCGGAATGGATTGAGTTTGTGGAGAAAACATCTTGTGAAACAAAACAAGGGAGCTTACATTTGTTGCTCGTTCAGTACAGACAACGATCCCCTGTTACCTTCTATCCAGCAGTTAACCAATGCTCGTGTCATCTATAGTGTATCTGCCGCACTGGGTCATAACAAGGACTCACATCCGGAATGCAGCGCAAGAGTTCCTGCCATTGTCACAGCTCTTGAGAAGAATGAGCTCACTCCTAAGTTCCGTGGCTCGGAGATTCTTGAACTTGCAAATTTCAAGAATGCGACAATAGAAGACATTGCAAATGTTCACGAGAAGGCTTATGTCTTAGGCCTGGAGAAGGCAATGGATCAAGCTTCAGATTCAGGACTAATTTTCATTGAAGGCTCTGGACCAACATACGCCACTTCAACGACATTCCAAGATTCACTTACCGCAGCCGGCGCTGGAATGGCTTTAGTTGATTCAGTGGTCGCAGCATCAAGAAACAGCTTGGACCCTCCAACTGGCTTTGCGTTGATAAGACCTCCAGGACACCACGCTGTGCCAAAAGGCCCAATGGGTTTCTGCGTTTTTGGTAATGTGGCAATCGCAGCTCGCCACGCCCAAAGTGCACATGGTCTGAAACGCGTCTTCATTATTGACTTCGATGTTCACCATGGAAATGGCACAAACGATGCGTTTTCTGAGGATCCTGATATATTCTTTTTGTCAACTCATCAGGATGGAAGCTATCCTGGAACAGGGAAGATAAGTGACATAGGCAAAGGAAAAGGTGAAGGCACCACTCTGAACTTACCTTTACCTGGAGGATCAGGTGATATTGCAATGAGAAGTGCTTTTGAAGAAATCATTGTTCCTTGTGTTCAACGTTTCAAGCCAGATCTTATTCTTGTTTCTGCCGGGTATGATGCTCATGTCCTGGATCCACTAGCGAATCTGCAGTTCACAACCGGAACATACTACTCATTGGCGAAAGATATAAAACAGTTAGCAAAAGAAGTATGTGGAGGGCGTTGTGTGTTCTTCCTGGAAGGAGGATACAATCTTGAGTCACTTTCTGCATCAGTAGCAGACTCGTTTCGAGCGTTGCTTGGGGAAGAAAGCTTGGCATCAGAGTTCGATAACCCAGCGTACTTGTATGATGAACCGATGAGGAAGGTGCATGATGCTATTGAGAGAGCCAAAAGCATTCATTGTTTATAA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |