WERAM Information


Tag Content
WERAM ID WERAM-Brr-0093
Ensembl Protein ID Bra018072.1-P
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra018072 Bra018072.1 Bra018072.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-I 5.00e-116 388.7 17 382
Organism Brassica rapa
Domain Profile
  HDAC Class-I

    class-1.txt   2 kvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenae......els.kelkkfnvge 90 
+v+y+y++++ g++ + +++s th+L+ +y+l+++++iv+p+ a+ +++++fhs eyi +l + +pe + +++ ++l+ f+++e
Bra018072.1-P 17 RVTYFYEPNI-----GDGSQRVSQQISTTHNLIRSYHLHNDMDIVRPSLAKDSDFVQFHSPEYIACLATLTPEYVDmankseSVAeTTLELFDLDE 107
7889999985.....67888999************************************************99887555544222357889***99 PP
class-1.txt 91 .dcPvfdglfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlhhGDgveeafyttdrv 185
d+P f gl +yc+l++G+s+ aa+kLn++eadiainw+GG+h ak++ea Gf yvnD+vl+ilellk +krvlyidi hGD v+eafy+tdrv
Bra018072.1-P 108 wDTPFFPGLIDYCRLYAGGSICAAAKLNRSEADIAINWSGGMHRAKRDEARGFGYVNDVVLGILELLKVFKRVLYIDIGYYHGDAVQEAFYKTDRV 203
9*********************************************************************************************** PP
class-1.txt 186 mtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfv 281
mtvsfh Gd++d g+ekg yy++n Plk+g+dD s+ +++ +vi+k +e+++Pea+vlqcG DslagD lg+fnl+i+gh+ c+ ++
Bra018072.1-P 204 MTVSFHESV---VQCRGDITDNGVEKGEYYSLNAPLKNGLDDASFVNLLVPVIHKAMEVYQPEAIVLQCGPDSLAGDALGKFNLTIEGHGACLGYI 296
******755...589********************************************************************************* PP
class-1.txt 282 ksfnlpllvlGGGGYtlrnvaRcwtyetavvl 313
+sfn+pl++lGG G+tl nvaRcw+yetav++
Bra018072.1-P 297 RSFNVPLMLLGGQGHTLGNVARCWCYETAVAV 328
*****************************986 PP
class-1.txt 54 eellkfhseeyieflkkvepenaeels 80
+ + + +++eyi +kk ++ ++++
Bra018072.1-P 356 NRMKNLNTDEYIAKIKKTLLNQLSQVI 382
567788888888888877766666554 PP

Protein Sequence
(Fasta)
MENAASLASG PDGKKRRVTY FYEPNIGDGS QRVSQQISTT HNLIRSYHLH NDMDIVRPSL 60
AKDSDFVQFH SPEYIACLAT LTPEYVDMAN KSESVAETTL ELFDLDEWDT PFFPGLIDYC 120
RLYAGGSICA AAKLNRSEAD IAINWSGGMH RAKRDEARGF GYVNDVVLGI LELLKVFKRV 180
LYIDIGYYHG DAVQEAFYKT DRVMTVSFHE SVVQCRGDIT DNGVEKGEYY SLNAPLKNGL 240
DDASFVNLLV PVIHKAMEVY QPEAIVLQCG PDSLAGDALG KFNLTIEGHG ACLGYIRSFN 300
VPLMLLGGQG HTLGNVARCW CYETAVAVGK VIDDDLDTNV SDACFAPGYQ LHIEPNRMKN 360
LNTDEYIAKI KKTLLNQLSQ VIHAPSVQFQ DTPPISQVTE ATVSTTHVDM DQNTRDITTD 420
FVALGNNVRM GRNGSVDLFH DV 442
Nucleotide Sequence
(Fasta)
ATGGAGAATG CGGCGAGCTT GGCTTCGGGT CCCGACGGAA AGAAACGGCG CGTGACCTAC 60
TTCTACGAGC CAAACATCGG CGACGGCAGT CAACGGGTAT CCCAACAGAT CAGTACGACT 120
CACAACCTCA TCCGCAGCTA TCACCTCCAC AATGACATGG ATATCGTCCG CCCTAGCCTT 180
GCCAAAGATT CAGATTTCGT TCAGTTTCAC TCGCCGGAGT ACATAGCATG CCTCGCTACT 240
CTCACGCCGG AGTATGTCGA CATGGCTAAT AAGTCAGAAA GCGTAGCCGA AACTACCCTC 300
GAGCTCTTCG ACTTAGACGA GTGGGACACC CCTTTCTTCC CTGGCCTCAT CGATTATTGC 360
CGTCTCTACG CCGGTGGTTC TATTTGCGCC GCCGCGAAAC TGAACCGAAG CGAAGCTGAT 420
ATCGCCATCA ATTGGTCCGG CGGGATGCAC CGCGCCAAGA GAGATGAGGC TCGTGGCTTT 480
GGCTACGTCA ACGACGTTGT TCTTGGGATC CTCGAGTTGC TCAAAGTCTT CAAGCGAGTT 540
CTCTACATAG ATATTGGGTA TTACCATGGG GATGCAGTAC AAGAAGCGTT CTACAAAACT 600
GATAGAGTTA TGACTGTTTC TTTCCACGAG TCTGTGGTCC AATGCAGAGG AGACATAACA 660
GACAACGGGG TAGAAAAGGG AGAATACTAT TCTCTAAATG CTCCGCTGAA GAATGGTTTG 720
GACGATGCAA GTTTCGTCAA TTTATTGGTA CCTGTCATCC ACAAGGCTAT GGAGGTTTAT 780
CAGCCGGAAG CAATTGTTCT TCAGTGTGGG CCTGATTCAC TAGCTGGTGA CGCGTTGGGT 840
AAATTCAACT TGACTATCGA GGGTCATGGT GCTTGTCTCG GGTACATAAG ATCATTTAAT 900
GTTCCTCTCA TGCTCTTGGG TGGTCAAGGT CACACTCTTG GAAATGTTGC ACGTTGCTGG 960
TGCTATGAGA CAGCAGTTGC GGTTGGAAAA GTAATTGACG ACGATCTCGA TACCAATGTC 1020
TCCGATGCGT GTTTTGCCCC AGGTTATCAA CTTCATATTG AGCCGAACCG CATGAAGAAT 1080
TTAAACACAG ACGAATATAT TGCAAAAATA AAGAAGACAT TACTAAACCA ACTTTCGCAA 1140
GTGATACACG CACCTAGTGT GCAGTTTCAA GACACTCCAC CAATCAGTCA AGTTACAGAA 1200
GCAACTGTCT CGACTACTCA CGTCGACATG GACCAGAACA CAAGAGACAT CACCACTGAT 1260
TTCGTGGCAC TTGGTAACAA TGTCCGAATG GGAAGAAATG GAAGTGTCGA TCTATTTCAT 1320
GACGTGTGA
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bro-0151 Bo8g076790.1 Brassica oleracea 95 0.0 801
WERAM-Art-0132 AT5G35600.1 Arabidopsis thaliana 62 5e-139 491
WERAM-Arl-0113 fgenesh2_kg.8__ 2309__ AT5G63110.1 Arabidopsis lyrata 57 4e-133 472
WERAM-Prp-0060 EMJ10303 Prunus persica 55 4e-123 439
WERAM-Sol-0082 Solyc06g071680.2.1 Solanum lycopersicum 55 8e-123 437
WERAM-Thc-0029 EOY20838 Theobroma cacao 54 9e-123 437
WERAM-Viv-0108 VIT_17s0000g09070.t01 Vitis vinifera 54 2e-121 433
WERAM-Glm-0046 GLYMA05G02540.1 Glycine max 53 1e-120 430
WERAM-Amt-0082 ERN02510 Amborella trichopoda 54 2e-119 426
WERAM-Sot-0054 PGSC0003DMT400046818 Solanum tuberosum 54 3e-119 426
WERAM-Pot-0149 POPTR_0015s09400.1 Populus trichocarpa 53 4e-119 425
WERAM-Met-0068 AES71453 Medicago truncatula 54 5e-118 422
WERAM-Php-0050 PP1S223_52V6.1 Physcomitrella patens 50 6e-116 415
WERAM-Sem-0132 EFJ35052 Selaginella moellendorffii 51 6e-112 401
WERAM-Orr-0094 ORUFI08G12880.1 Oryza rufipogon 50 2e-111 399
WERAM-Ors-0081 OS08T0344100-01 Oryza sativa 50 5e-111 398
WERAM-Orp-0087 OPUNC08G10650.1 Oryza punctata 50 5e-111 398
WERAM-Orm-0085 OMERI08G09730.1 Oryza meridionalis 50 5e-111 398
WERAM-Ori-0098 BGIOSGA028498-PA Oryza indica 50 5e-111 398
WERAM-Orgl-0088 OGLUM08G12440.1 Oryza glumaepatula 50 5e-111 398
WERAM-Org-0090 ORGLA08G0103000.1 Oryza glaberrima 50 5e-111 398
WERAM-Brd-0068 BRADI3G08060.1 Brachypodium distachyon 50 2e-110 396
WERAM-Sei-0051 Si013709m Setaria italica 50 4e-110 395
WERAM-Tra-0318 Traes_7DL_578CF3F0D.2 Triticum aestivum 49 1e-109 394
WERAM-Orbr-0098 OB08G20020.1 Oryza brachyantha 50 3e-109 392
WERAM-Zem-0077 GRMZM2G136067_P01 Zea mays 49 5e-109 392
WERAM-Sob-0102 Sb07g018230.1 Sorghum bicolor 49 6e-109 391
WERAM-Hov-0020 MLOC_17056.1 Hordeum vulgare 50 2e-107 387
WERAM-Aet-0051 EMT16627 Aegilops tauschii 51 3e-107 386
WERAM-Tag-0022 ENSTGUP00000001473.1 Taeniopygia guttata 49 5e-107 385
WERAM-Gaga-0034 ENSGALP00000005212.3 Gallus gallus 49 5e-107 385
WERAM-Loa-0056 ENSLAFP00000004079.2 Loxodonta africana 49 7e-107 384
WERAM-Ran-0062 ENSRNOP00000012854.5 Rattus norvegicus 48 3e-106 382
WERAM-Ova-0221 ENSOARP00000022517.1 Ovis aries 48 4e-106 382
WERAM-Ocp-0006 ENSOPRP00000000780.1 Ochotona princeps 48 4e-106 382
WERAM-Bot-0118 ENSBTAP00000016877.5 Bos taurus 48 4e-106 382
WERAM-Mum-0093 ENSMUSP00000099657.4 Mus musculus 48 4e-106 382
WERAM-Ptv-0152 ENSPVAP00000012567.1 Pteropus vampyrus 48 4e-106 382
WERAM-Mup-0173 ENSMPUP00000015122.1 Mustela putorius furo 48 5e-106 382
WERAM-Cii-0014 ENSCINP00000005410.3 Ciona intestinalis 49 6e-106 381
WERAM-Hos-0092 ENSP00000362649.3 Homo sapiens 48 7e-106 381
WERAM-Gog-0132 ENSGGOP00000011454.2 Gorilla gorilla 48 7e-106 381
WERAM-Otg-0072 ENSOGAP00000005101.2 Otolemur garnettii 48 7e-106 381
WERAM-Cap-0092 ENSCPOP00000006985.2 Cavia porcellus 48 8e-106 381
WERAM-Orb-0066 OBART06G19560.1 Oryza barthii 50 8e-106 381
WERAM-Orc-0030 ENSOCUP00000003186.2 Oryctolagus cuniculus 48 8e-106 381
WERAM-Nol-0026 ENSNLEP00000003167.1 Nomascus leucogenys 48 9e-106 381
WERAM-Anc-0033 ENSACAP00000004062.3 Anolis carolinensis 48 1e-105 380
WERAM-Drm-0018 FBpp0073173 Drosophila melanogaster 48 3e-105 379
WERAM-Poa-0013 ENSPPYP00000001838.2 Pongo abelii 48 4e-105 379
WERAM-Caf-0116 ENSCAFP00000015619.3 Canis familiaris 48 9e-105 377
WERAM-Myl-0152 ENSMLUP00000012593.2 Myotis lucifugus 48 1e-104 377
WERAM-Meg-0047 ENSMGAP00000004521.2 Meleagris gallopavo 49 3e-104 375
WERAM-Dan-0175 ENSDNOP00000033349.1 Dasypus novemcinctus 48 4e-104 375
WERAM-Fia-0005 ENSFALP00000000658.1 Ficedula albicollis 50 1e-103 374
WERAM-Chs-0011 ENSCSAP00000016960.1 Chlorocebus sabaeus 49 2e-103 373
WERAM-Aim-0087 ENSAMEP00000008076.1 Ailuropoda melanoleuca 48 2e-103 373
WERAM-Anp-0136 ENSAPLP00000014652.1 Anas platyrhynchos 50 3e-103 372
WERAM-Pes-0020 ENSPSIP00000004435.1 Pelodiscus sinensis 48 3e-103 372
WERAM-Pat-0210 ENSPTRP00000060659.1 Pan troglodytes 49 3e-103 372
WERAM-Eqc-0125 ENSECAP00000014039.1 Equus caballus 49 3e-103 372
WERAM-Lep-0023 LPERR02G07360.1 Leersia perrieri 49 7e-103 371
WERAM-Fec-0127 ENSFCAP00000011581.3 Felis catus 50 2e-102 370
WERAM-Sus-0201 ENSSSCP00000023024.1 Sus scrofa 49 2e-102 369
WERAM-Tut-0167 ENSTTRP00000014262.1 Tursiops truncatus 47 5e-102 368
WERAM-Osl-0002 ABO94711 Ostreococcus lucimarinus 44 9e-102 367
WERAM-Tar-0085 ENSTRUP00000016627.1 Takifugu rubripes 50 1e-101 367
WERAM-Orla-0197 ENSORLP00000022529.1 Oryzias latipes 50 1e-101 367
WERAM-Orni-0020 ONIVA02G09910.1 Oryza nivara 46 2e-101 367
WERAM-Gaa-0093 ENSGACP00000012045.1 Gasterosteus aculeatus 49 2e-101 366
WERAM-Ved-0020 EGY15146 Verticillium dahliae 45 2e-101 366
WERAM-Xim-0061 ENSXMAP00000005239.1 Xiphophorus maculatus 48 2e-101 366
WERAM-Asn-0024 CADANIAP00005952 Aspergillus nidulans 44 2e-101 366
WERAM-Ten-0109 ENSTNIP00000012136.1 Tetraodon nigroviridis 49 4e-101 365
WERAM-Orn-0090 ENSONIP00000010308.1 Oreochromis niloticus 48 4e-101 365
WERAM-Pof-0181 ENSPFOP00000015600.1 Poecilia formosa 48 7e-101 364
WERAM-Asni-0020 CADANGAP00005938 Aspergillus niger 45 8e-101 364
WERAM-Asm-0151 ENSAMXP00000014739.1 Astyanax mexicanus 49 8e-101 364
WERAM-Leo-0014 ENSLOCP00000002993.1 Lepisosteus oculatus 48 1e-100 364
WERAM-Asf-0020 CADAFLAP00008921 Aspergillus flavus 46 1e-100 364
WERAM-Dar-0035 ENSDARP00000051798.4 Danio rerio 48 2e-100 363
WERAM-Cae-0005 C53A5.3 Caenorhabditis elegans 47 2e-100 363
WERAM-Xet-0037 ENSXETP00000011480.3 Xenopus tropicalis 48 2e-100 363
WERAM-Scs-0023 EDO03342 Sclerotinia sclerotiorum 46 3e-100 362
WERAM-Gam-0211 ENSGMOP00000020496.1 Gadus morhua 48 5e-100 362
WERAM-Spr-0005 CBQ70764 Sporisorium reilianum 47 5e-100 362
WERAM-Coi-0024 EAS33504 Coccidioides immitis 45 6e-100 362
WERAM-Asfu-0015 CADAFUAP00003503 Aspergillus fumigatus 45 8e-100 361
WERAM-Asc-0037 CADACLAP00008612 Aspergillus clavatus 45 8e-100 361
WERAM-Ect-0064 ENSETEP00000006883.1 Echinops telfairi 48 1e-99 360
WERAM-Mod-0165 ENSMODP00000022264.3 Monodelphis domestica 48 1e-99 360
WERAM-Cis-0077 ENSCSAVP00000016740.1 Ciona savignyi 44 1e-99 360
WERAM-Paa-0030 ENSPANP00000015145.1 Papio anubis 48 1e-99 360
WERAM-Mua-0044 GSMUA_Achr2P06520_001 Musa acuminata 52 1e-99 360
WERAM-Ict-0111 ENSSTOP00000011457.2 Ictidomys tridecemlineatus 48 1e-99 360
WERAM-Cag-0003 CAG57932 Candida glabrata 47 1e-99 360
WERAM-Kll-0018 CAG99124 Kluyveromyces lactis 44 2e-99 360
WERAM-Asg-0034 AAS54885 Ashbya gossypii 46 8e-99 358
WERAM-Sac-0039 YNL330C Saccharomyces cerevisiae 46 2e-98 356
WERAM-Mam-0083 ENSMMUP00000013015.2 Macaca mulatta 50 3e-97 352
WERAM-Usm-0008 UM01352P0 Ustilago maydis 48 5e-97 352
WERAM-Sah-0134 ENSSHAP00000014467.1 Sarcophilus harrisii 49 6e-97 352
WERAM-Ere-0068 ENSEEUP00000005465.1 Erinaceus europaeus 49 7e-97 351
WERAM-Mae-0008 ENSMEUP00000000621.1 Macropus eugenii 46 7e-97 351
Created Date 25-Jun-2016