| Tag |
Content |
| WERAM ID |
WERAM-Mua-0114 |
| Ensembl Protein ID |
GSMUA_Achr8P04190_001 |
| Gene Name |
HDAC6 |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
4.20e-142 |
474.1 |
21 |
301 |
|
| Organism |
Musa acuminata |
| Domain Profile |
HDAC Class-I
class-1.txt 1 kkvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivk 47
++v+y+yd+dvg+y+yg +hpmkp+r+++th L+ +ygl +++ ++
GSMUA_Achr8P04190_001 21 RRVSYFYDPDVGNYYYGLGHPMKPHRIRMTHALLEKYGLLDRMKTLT 67
589****************************************9765 PP
class-1.txt 83 lkkfnvgedcPvfdglfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlh 170
++fn+ +dcPvf lfe+cq++tGas++aak+Ln+++adi+inw+GGlhhak+seasGfcyvnDivlail+ll +h+rvly+did+h
GSMUA_Achr8P04190_001 72 ARRFNITDDCPVFYRLFEFCQTYTGASVDAAKELNRSNADIVINWSGGLHHAKRSEASGFCYVNDIVLAILKLLENHDRVLYVDIDIH 159
579************************************************************************************* PP
class-1.txt 171 hGDgveeafyttdrvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDs 258
hGDgveeaf ttdrvmtvsfhk+ge +fPgtG+l d g +kgkyyavnvPl+dgidDesy+ +fk++i kv+e+f+P+avvlqcGaDs
GSMUA_Achr8P04190_001 160 HGDGVEEAFFTTDRVMTVSFHKFGE-YFPGTGHLLDNGYGKGKYYAVNVPLNDGIDDESYHYLFKPIIAKVMEVFNPDAVVLQCGADS 246
*************************.************************************************************** PP
class-1.txt 259 lagDrlgefnlsikghaecvkfvksfnlpllvlGGGGYtlrnvaRcwtyetavvl 313
l+gDrlg+fnls+kghaecv++++sfn+pl++lGGGGYtlrnvaRcw+yet+v+l
GSMUA_Achr8P04190_001 247 LSGDRLGCFNLSVKGHAECVRYLRSFNVPLMLLGGGGYTLRNVARCWCYETGVAL 301
****************************************************986 PP
|
Protein Sequence
(Fasta) | MEGAGGGNSL PSTSGADAVK RRVSYFYDPD VGNYYYGLGH PMKPHRIRMT HALLEKYGLL 60
DRMKTLTNPC VARRFNITDD CPVFYRLFEF CQTYTGASVD AAKELNRSNA DIVINWSGGL 120
HHAKRSEASG FCYVNDIVLA ILKLLENHDR VLYVDIDIHH GDGVEEAFFT TDRVMTVSFH 180
KFGEYFPGTG HLLDNGYGKG KYYAVNVPLN DGIDDESYHY LFKPIIAKVM EVFNPDAVVL 240
QCGADSLSGD RLGCFNLSVK GHAECVRYLR SFNVPLMLLG GGGYTLRNVA RCWCYETGVA 300
LHVEVNDKMP DHEYLGYYGP DYNIHVATSN MENKNSRKSL DDIKAKILDN LSKLQHAPSV 360
QFQEWPTDTE LDEVLALFCL PLLSTCNLIW LENTKIFISI MLSDAEFFDN VVAFFLGLMY 420
SNISFLLVLD I 431Protein Fasta Sequence
>GSMUA_Achr8P04190_001|Class-I|Musa acuminata
MEGAGGGNSLPSTSGADAVKRRVSYFYDPDVGNYYYGLGHPMKPHRIRMTHALLEKYGLLDRMKTLTNPCVARRFNITDDCPVFYRLFEFCQTYTGASVDAAKELNRSNADIVINWSGGLHHAKRSEASGFCYVNDIVLAILKLLENHDRVLYVDIDIHHGDGVEEAFFTTDRVMTVSFHKFGEYFPGTGHLLDNGYGKGKYYAVNVPLNDGIDDESYHYLFKPIIAKVMEVFNPDAVVLQCGADSLSGDRLGCFNLSVKGHAECVRYLRSFNVPLMLLGGGGYTLRNVARCWCYETGVALHVEVNDKMPDHEYLGYYGPDYNIHVATSNMENKNSRKSLDDIKAKILDNLSKLQHAPSVQFQEWPTDTELDEVLALFCLPLLSTCNLIWLENTKIFISIMLSDAEFFDNVVAFFLGLMYSNISFLLVLDI |
Nucleotide Sequence
(Fasta) | ATGGAGGGCG CAGGCGGCGG AAACTCGTTG CCGTCGACGT CGGGAGCGGA CGCGGTGAAA 60
CGGAGGGTTA GCTACTTCTA CGACCCGGAT GTGGGGAACT ACTACTACGG TCTGGGACAC 120
CCGATGAAGC CCCACCGGAT CCGGATGACC CACGCTCTCC TCGAGAAGTA CGGCCTCCTC 180
GACCGCATGA AGACCCTGAC CAACCCCTGC GTCGCCCGCC GCTTCAACAT CACCGACGAC 240
TGCCCCGTCT TCTACCGGCT CTTCGAGTTC TGCCAGACCT ACACCGGCGC CTCCGTCGAC 300
GCCGCCAAGG AGCTCAACCG CAGCAACGCC GACATAGTCA TCAACTGGTC CGGCGGCCTC 360
CACCACGCCA AGCGCTCCGA GGCCTCCGGC TTCTGCTACG TCAACGATAT CGTCCTCGCC 420
ATCCTCAAGC TTCTCGAGAA TCACGACCGT GTTCTCTACG TGGACATTGA TATCCACCAT 480
GGAGATGGTG TCGAGGAGGC TTTCTTCACA ACTGATAGAG TAATGACAGT CTCATTCCAC 540
AAGTTTGGAG AATATTTTCC TGGGACAGGA CATTTACTCG ACAATGGCTA TGGGAAAGGG 600
AAATATTATG CTGTAAATGT CCCTTTAAAT GATGGAATCG ATGATGAGAG CTACCATTAT 660
CTATTCAAAC CTATCATAGC AAAAGTTATG GAAGTTTTCA ACCCTGATGC TGTGGTGCTT 720
CAATGTGGTG CCGACTCCTT ATCTGGAGAC AGATTGGGTT GTTTCAATCT TTCTGTCAAA 780
GGCCATGCAG AGTGCGTAAG ATACCTTCGA TCTTTTAATG TGCCACTGAT GCTGCTTGGT 840
GGAGGTGGCT ATACATTACG TAATGTTGCT CGCTGTTGGT GCTACGAGAC TGGAGTGGCC 900
CTTCATGTTG AAGTGAATGA CAAGATGCCT GATCATGAAT ATCTCGGGTA CTATGGCCCA 960
GACTATAACA TCCATGTCGC AACAAGTAAT ATGGAAAATA AGAATTCACG CAAGTCATTG 1020
GACGATATAA AAGCCAAGAT ACTAGATAAT CTTTCAAAGC TCCAACATGC TCCGAGTGTG 1080
CAATTCCAGG AATGGCCAAC TGATACAGAG CTTGATGAGG TACTTGCACT CTTTTGTCTT 1140
CCTTTGCTGT CAACTTGTAA TCTGATTTGG CTTGAAAATA CTAAAATTTT TATTTCTATC 1200
ATGCTGTCGG ATGCTGAATT TTTTGATAAT GTGGTTGCTT TTTTCTTAGG CCTTATGTAT 1260
AGCAATATCT CATTTCTCTT AGTTTTGGAC ATATGA
1297Nucleotide Fasta Sequence
>GSMUA_Achr8P04190_001|Class-I|Musa acuminata
ATGGAGGGCGCAGGCGGCGGAAACTCGTTGCCGTCGACGTCGGGAGCGGACGCGGTGAAACGGAGGGTTAGCTACTTCTACGACCCGGATGTGGGGAACTACTACTACGGTCTGGGACACCCGATGAAGCCCCACCGGATCCGGATGACCCACGCTCTCCTCGAGAAGTACGGCCTCCTCGACCGCATGAAGACCCTGACCAACCCCTGCGTCGCCCGCCGCTTCAACATCACCGACGACTGCCCCGTCTTCTACCGGCTCTTCGAGTTCTGCCAGACCTACACCGGCGCCTCCGTCGACGCCGCCAAGGAGCTCAACCGCAGCAACGCCGACATAGTCATCAACTGGTCCGGCGGCCTCCACCACGCCAAGCGCTCCGAGGCCTCCGGCTTCTGCTACGTCAACGATATCGTCCTCGCCATCCTCAAGCTTCTCGAGAATCACGACCGTGTTCTCTACGTGGACATTGATATCCACCATGGAGATGGTGTCGAGGAGGCTTTCTTCACAACTGATAGAGTAATGACAGTCTCATTCCACAAGTTTGGAGAATATTTTCCTGGGACAGGACATTTACTCGACAATGGCTATGGGAAAGGGAAATATTATGCTGTAAATGTCCCTTTAAATGATGGAATCGATGATGAGAGCTACCATTATCTATTCAAACCTATCATAGCAAAAGTTATGGAAGTTTTCAACCCTGATGCTGTGGTGCTTCAATGTGGTGCCGACTCCTTATCTGGAGACAGATTGGGTTGTTTCAATCTTTCTGTCAAAGGCCATGCAGAGTGCGTAAGATACCTTCGATCTTTTAATGTGCCACTGATGCTGCTTGGTGGAGGTGGCTATACATTACGTAATGTTGCTCGCTGTTGGTGCTACGAGACTGGAGTGGCCCTTCATGTTGAAGTGAATGACAAGATGCCTGATCATGAATATCTCGGGTACTATGGCCCAGACTATAACATCCATGTCGCAACAAGTAATATGGAAAATAAGAATTCACGCAAGTCATTGGACGATATAAAAGCCAAGATACTAGATAATCTTTCAAAGCTCCAACATGCTCCGAGTGTGCAATTCCAGGAATGGCCAACTGATACAGAGCTTGATGAGGTACTTGCACTCTTTTGTCTTCCTTTGCTGTCAACTTGTAATCTGATTTGGCTTGAAAATACTAAAATTTTTATTTCTATCATGCTGTCGGATGCTGAATTTTTTGATAATGTGGTTGCTTTTTTCTTAGGCCTTATGTATAGCAATATCTCATTTCTCTTAGTTTTGGACATATGA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
