Tag |
Content |
WERAM ID |
WERAM-Arl-0010 |
Ensembl Protein ID |
Al_scaffold_0005_1636 |
Gene Name |
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Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-I |
9.60e-108 |
361.1 |
22 |
319 |
|
Organism |
Arabidopsis lyrata |
Domain Profile |
HDAC Class-I
class-1.txt 7 ydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeels...kelkkfnvge. 90 ++++ ++p+ p +++h+Lvl+ygl +++ei +p a + ++++fhs eyi+fl + +p n ++ s ++++ f+++ Al_scaffold_0005_1636 22 FEPE-------IGQPTDPFPSHMAHKLVLTYGLDRHMEISRPYLAGVFDFTQFHSPEYIQFLASLTPMNLKDPSvslNKSRFFDLDVn 102 4433.......4689999999************************************************9955433445555666532 PP class-1.txt 91 ...dcPvfdglfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlhhGDgv 175 ++ +f+glf+yc++++G+sl+aa kLn++eadiainwaGG+h ak+++asGf +vnD+vlai ellk +krvlyidi + hGD v Al_scaffold_0005_1636 103 rhtNSTIFNGLFDYCRASAGGSLSAAVKLNRREADIAINWAGGMHRAKRDRASGFSFVNDVVLAIAELLKVFKRVLYIDIGFRHGDAV 190 234899********************************************************************************** PP class-1.txt 176 eeafyttdrvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDr 263 eeafy+tdrvmtvsfh y ++ fP Gd ++ y++ Plk+g++D+s++++f++vi+k +++++Pe+vvlqcGaDslagD Al_scaffold_0005_1636 191 EEAFYNTDRVMTVSFHTYTDTPFPRDGDRRE-------LYSLKAPLKNGLKDKSLRNLFRPVINKAMQVYQPEVVVLQCGADSLAGDF 271 **************************98665.......69***********************************************5 PP class-1.txt 264 lgefnlsikghaecvkfvksfnlpllvlGGGGYtlrnvaRcwtyetavvl 313 +fnl +kgh+ c+++++sfn+pl+vlGGGG t r vaRcw+yeta+++ Al_scaffold_0005_1636 272 --TFNLKVKGHGACLEYIRSFNVPLMVLGGGGSTFRHVARCWCYETAIAV 319 ..8********************************************986 PP
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Protein Sequence (Fasta) | MENTASLVTG PDGRKRRVSY FFEPEIGQPT DPFPSHMAHK LVLTYGLDRH MEISRPYLAG 60 VFDFTQFHSP EYIQFLASLT PMNLKDPSVS LNKSRFFDLD VNRHTNSTIF NGLFDYCRAS 120 AGGSLSAAVK LNRREADIAI NWAGGMHRAK RDRASGFSFV NDVVLAIAEL LKVFKRVLYI 180 DIGFRHGDAV EEAFYNTDRV MTVSFHTYTD TPFPRDGDRR ELYSLKAPLK NGLKDKSLRN 240 LFRPVINKAM QVYQPEVVVL QCGADSLAGD FTFNLKVKGH GACLEYIRSF NVPLMVLGGG 300 GSTFRHVARC WCYETAIAVG VGEQLEEELK VNEFHYKPNF QPDFNTARDI EIIRNGLLRQ 360 LSQLIHVPSV QFQDTPPISE ATEPAEVDME KRQVIQNLRR SKL 403Protein Fasta Sequence
>Al_scaffold_0005_1636|Class-I|Arabidopsis lyrata MENTASLVTGPDGRKRRVSYFFEPEIGQPTDPFPSHMAHKLVLTYGLDRHMEISRPYLAGVFDFTQFHSPEYIQFLASLTPMNLKDPSVSLNKSRFFDLDVNRHTNSTIFNGLFDYCRASAGGSLSAAVKLNRREADIAINWAGGMHRAKRDRASGFSFVNDVVLAIAELLKVFKRVLYIDIGFRHGDAVEEAFYNTDRVMTVSFHTYTDTPFPRDGDRRELYSLKAPLKNGLKDKSLRNLFRPVINKAMQVYQPEVVVLQCGADSLAGDFTFNLKVKGHGACLEYIRSFNVPLMVLGGGGSTFRHVARCWCYETAIAVGVGEQLEEELKVNEFHYKPNFQPDFNTARDIEIIRNGLLRQLSQLIHVPSVQFQDTPPISEATEPAEVDMEKRQVIQNLRRSKL
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Nucleotide Sequence (Fasta) | ATGGAAAATA CGGCGAGCTT AGTGACGGGT CCCGACGGAC GAAAACGGCG AGTGAGCTAC 60 TTCTTCGAGC CAGAGATTGG CCAACCAACG GATCCCTTTC CGAGCCATAT GGCGCACAAG 120 CTCGTCCTCA CATATGGCCT CGACCGCCAC ATGGAAATCA GCCGCCCATA TCTCGCCGGC 180 GTTTTCGATT TCACACAATT CCACTCACCG GAGTATATCC AATTCCTCGC CTCCCTTACG 240 CCGATGAATT TAAAGGATCC TTCCGTCTCG CTTAACAAAA GTCGCTTCTT CGACCTAGAT 300 GTGAACCGGC ACACAAACAG TACTATCTTC AACGGCCTCT TCGATTATTG CCGCGCCTCT 360 GCTGGTGGTT CTTTAAGCGC CGCCGTCAAA TTGAACCGTC GGGAAGCCGA TATTGCTATC 420 AATTGGGCCG GTGGGATGCA CCGTGCCAAG CGTGATCGTG CTTCTGGCTT TAGCTTCGTC 480 AATGACGTTG TGCTTGCGAT TGCCGAGTTG CTCAAGGTTT TCAAGCGAGT TCTCTACATA 540 GATATTGGCT TCCGTCATGG GGATGCAGTG GAAGAAGCAT TTTACAATAC GGATAGAGTT 600 ATGACTGTTT CTTTCCACAC ATATACGGAC ACACCTTTCC CAAGAGACGG AGACAGAAGG 660 GAGTTGTATT CTCTAAAAGC ACCATTAAAG AATGGGCTCA AAGATAAAAG TCTTCGCAAC 720 TTGTTCAGAC CTGTTATCAA CAAGGCAATG CAAGTTTATC AGCCAGAAGT TGTTGTTCTT 780 CAGTGTGGTG CTGATTCATT AGCTGGTGAT TTTACATTCA ACTTGAAAGT CAAGGGTCAC 840 GGTGCTTGTC TCGAGTACAT AAGATCTTTT AATGTTCCTC TCATGGTCTT GGGTGGTGGT 900 GGTTCTACTT TTCGACATGT TGCTCGTTGC TGGTGCTATG AGACAGCGAT TGCGGTTGGG 960 GTTGGGGAAC AACTTGAAGA AGAACTCAAA GTCAATGAGT TTCATTATAA GCCAAACTTC 1020 CAGCCGGATT TTAACACAGC AAGAGATATT GAGATTATAA GGAATGGTTT ACTACGGCAA 1080 CTTTCACAGC TAATACACGT ACCAAGTGTA CAGTTTCAAG ACACTCCACC AATCAGTGAA 1140 GCTACAGAAC CGGCGGAAGT GGACATGGAG AAGAGACAAG TTATACAAAA TTTGAGGCGA 1200 TCCAAGCTAT GA
1213Nucleotide Fasta Sequence
>Al_scaffold_0005_1636|Class-I|Arabidopsis lyrata ATGGAAAATACGGCGAGCTTAGTGACGGGTCCCGACGGACGAAAACGGCGAGTGAGCTACTTCTTCGAGCCAGAGATTGGCCAACCAACGGATCCCTTTCCGAGCCATATGGCGCACAAGCTCGTCCTCACATATGGCCTCGACCGCCACATGGAAATCAGCCGCCCATATCTCGCCGGCGTTTTCGATTTCACACAATTCCACTCACCGGAGTATATCCAATTCCTCGCCTCCCTTACGCCGATGAATTTAAAGGATCCTTCCGTCTCGCTTAACAAAAGTCGCTTCTTCGACCTAGATGTGAACCGGCACACAAACAGTACTATCTTCAACGGCCTCTTCGATTATTGCCGCGCCTCTGCTGGTGGTTCTTTAAGCGCCGCCGTCAAATTGAACCGTCGGGAAGCCGATATTGCTATCAATTGGGCCGGTGGGATGCACCGTGCCAAGCGTGATCGTGCTTCTGGCTTTAGCTTCGTCAATGACGTTGTGCTTGCGATTGCCGAGTTGCTCAAGGTTTTCAAGCGAGTTCTCTACATAGATATTGGCTTCCGTCATGGGGATGCAGTGGAAGAAGCATTTTACAATACGGATAGAGTTATGACTGTTTCTTTCCACACATATACGGACACACCTTTCCCAAGAGACGGAGACAGAAGGGAGTTGTATTCTCTAAAAGCACCATTAAAGAATGGGCTCAAAGATAAAAGTCTTCGCAACTTGTTCAGACCTGTTATCAACAAGGCAATGCAAGTTTATCAGCCAGAAGTTGTTGTTCTTCAGTGTGGTGCTGATTCATTAGCTGGTGATTTTACATTCAACTTGAAAGTCAAGGGTCACGGTGCTTGTCTCGAGTACATAAGATCTTTTAATGTTCCTCTCATGGTCTTGGGTGGTGGTGGTTCTACTTTTCGACATGTTGCTCGTTGCTGGTGCTATGAGACAGCGATTGCGGTTGGGGTTGGGGAACAACTTGAAGAAGAACTCAAAGTCAATGAGTTTCATTATAAGCCAAACTTCCAGCCGGATTTTAACACAGCAAGAGATATTGAGATTATAAGGAATGGTTTACTACGGCAACTTTCACAGCTAATACACGTACCAAGTGTACAGTTTCAAGACACTCCACCAATCAGTGAAGCTACAGAACCGGCGGAAGTGGACATGGAGAAGAGACAAGTTATACAAAATTTGAGGCGATCCAAGCTATGA
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Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |