WERAM Information

Tag Content
WERAM ID WERAM-Art-0081
Ensembl Protein ID AT3G44660.1
Uniprot Accession Q9M1N8; HDA10_ARATH
Genbank Protein ID NP_190052.1
Protein Name Putative histone deacetylase 10
Genbank Nucleotide ID NM_114334.1
Gene Name HDA10,At3g44660;T18B22.60
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G44660 AT3G44660.1 AT3G44660.1
Details
Type Family Domain Substrates AA References (PMIDs)
HDAC Class-I Histone deacetylase H2A; H2B; H3; H4 K 22363501
Status Reviewed
Classification
Type Family E-value Score Start End
HDAC Class-I 0.000077 23.2 13 87
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)		 Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity).
Domain Profile
  HDAC Class-I
  class-1.txt 293 GGGYtlrnvaRcwtyetavvl 313
                   GGYt++nvaRcwt+et+++l
  AT3G44660.1  13 CGGYTKENVARCWTVETGILL 33 
                  59*****************97 PP
  class-1.txt 144 yvnDivlailellkkhk 160
                  y+  i + ile l++ +
  AT3G44660.1  71 YISSIKVQILENLRYIQ 87 
                  77788888888877765 PP
Protein Sequence
(Fasta)		MAFSMLFTGH AECGGYTKEN VARCWTVETG ILLDTELPNE IPENDYIKYF APDFSLKIPG 60
GHIENLNTKS YISSIKVQIL ENLRYIQHAP SVQMQEVPPD FYIPDFDEDE QNPDVRVDQR 120
SRDKQIQRDD EYFDGDNDND AS 142
Nucleotide Sequence
(Fasta)		ATGGCTTTCT CTATGCTTTT CACAGGACAT GCTGAATGTG GAGGATACAC AAAGGAGAAT 60
GTAGCTCGTT GTTGGACCGT TGAGACTGGC ATTCTTTTGG ATACAGAACT TCCTAATGAG 120
ATTCCTGAAA ACGACTACAT AAAGTATTTT GCGCCGGATT TTTCTTTGAA GATACCGGGT 180
GGTCACATTG AGAATCTTAA TACCAAATCG TACATCAGTT CGATCAAAGT GCAGATTTTG 240
GAGAATTTGC GATACATTCA ACACGCTCCA AGCGTACAGA TGCAGGAGGT TCCACCGGAT 300
TTCTACATAC CGGATTTTGA TGAAGACGAA CAAAACCCGG ATGTACGTGT GGATCAGCGT 360
TCACGGGATA AGCAGATCCA AAGGGATGAT GAATATTTCG ATGGAGACAA CGATAACGAT 420
GCGTCGTAA
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
--
Interpro

IPR000286--His_deacetylse
IPR023801--His_deacetylse_dom
PROSITE
Pfam
Gene Ontology

GO:0005634--C:nucleus
GO:0032041--F:NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0024 fgenesh1_pg.C_scaffold_5000937 Arabidopsis lyrata 86 3e-67 250
WERAM-Bro-0059 Bo3g120880.1 Brassica oleracea 80 4e-63 236
WERAM-Brr-0098 Bra019424.1-P Brassica rapa 80 5e-63 236
WERAM-Viv-0093 VIT_15s0021g00610.t01 Vitis vinifera 74 6e-59 223
WERAM-Glm-0130 GLYMA11G19290.1 Glycine max 73 1e-57 218
WERAM-Sol-0138 Solyc11g067020.1.1 Solanum lycopersicum 71 2e-57 218
WERAM-Prp-0063 EMJ06433 Prunus persica 72 2e-57 218
WERAM-Pot-0020 POPTR_0001s46430.1 Populus trichocarpa 72 4e-57 216
WERAM-Thc-0114 EOY33523 Theobroma cacao 71 5e-56 213
WERAM-Met-0097 AES88434 Medicago truncatula 71 2e-55 211
WERAM-Mua-0089 GSMUA_Achr6P17260_001 Musa acuminata 69 3e-55 210
WERAM-Zem-0071 GRMZM2G119703_P01 Zea mays 66 7e-53 202
WERAM-Amt-0048 ERN13133 Amborella trichopoda 69 1e-52 202
WERAM-Orbr-0052 OB04G18820.1 Oryza brachyantha 66 6e-52 199
WERAM-Sei-0035 Si010167m Setaria italica 66 7e-52 199
WERAM-Sob-0086 Sb06g015420.1 Sorghum bicolor 65 9e-52 199
WERAM-Tra-0081 Traes_2DL_625707569.1 Triticum aestivum 63 1e-51 198
WERAM-Brd-0123 BRADI5G09190.1 Brachypodium distachyon 64 1e-51 198
WERAM-Aet-0101 EMT12816 Aegilops tauschii 63 2e-51 197
WERAM-Orl-0026 KN538765.1_FGP002 Oryza longistaminata 65 2e-51 197
WERAM-Orm-0045 OMERI04G10320.1 Oryza meridionalis 65 2e-51 197
WERAM-Org-0044 ORGLA04G0087200.1 Oryza glaberrima 65 3e-51 197
WERAM-Orni-0039 ONIVA04G09660.1 Oryza nivara 65 3e-51 197
WERAM-Ori-0051 BGIOSGA016344-PA Oryza indica 65 3e-51 197
WERAM-Orgl-0043 OGLUM04G11380.3 Oryza glumaepatula 65 3e-51 197
WERAM-Orr-0042 ORUFI04G12890.1 Oryza rufipogon 65 3e-51 197
WERAM-Orb-0042 OBART04G11700.1 Oryza barthii 64 1e-50 195
WERAM-Sem-0137 EFJ33452 Selaginella moellendorffii 63 8e-49 189
WERAM-Php-0035 PP1S180_68V6.1 Physcomitrella patens 63 3e-48 187
WERAM-Tru-0028 TRIUR3_16261-P1 Triticum urartu 63 2e-47 185
WERAM-Orp-0042 OPUNC04G09700.1 Oryza punctata 64 7e-46 179
WERAM-Sot-0082 PGSC0003DMT400068240 Solanum tuberosum 52 1e-35 145
WERAM-Pof-0067 ENSPFOP00000005770.2 Poecilia formosa 47 2e-30 128
WERAM-Tut-0167 ENSTTRP00000014262.1 Tursiops truncatus 45 2e-30 127
WERAM-Orla-0197 ENSORLP00000022529.1 Oryzias latipes 46 3e-30 127
WERAM-Ten-0109 ENSTNIP00000012136.1 Tetraodon nigroviridis 46 8e-30 126
WERAM-Xim-0002 ENSXMAP00000000390.1 Xiphophorus maculatus 46 8e-30 126
WERAM-Gaa-0093 ENSGACP00000012045.1 Gasterosteus aculeatus 46 9e-30 125
WERAM-Orn-0087 ENSONIP00000009730.1 Oreochromis niloticus 46 1e-29 125
WERAM-Chr-0011 EDP01149 Chlamydomonas reinhardtii 47 2e-29 124
WERAM-Gam-0033 ENSGMOP00000003469.1 Gadus morhua 46 2e-29 124
WERAM-Myl-0215 ENSMLUP00000016605.1 Myotis lucifugus 45 3e-29 124
WERAM-Tar-0126 ENSTRUP00000027023.1 Takifugu rubripes 46 3e-29 124
WERAM-Anc-0129 ENSACAP00000012046.2 Anolis carolinensis 46 4e-29 124
WERAM-Dar-0035 ENSDARP00000051798.4 Danio rerio 44 4e-29 124
WERAM-Pes-0022 ENSPSIP00000004737.1 Pelodiscus sinensis 46 4e-29 124
WERAM-Caj-0052 ENSCJAP00000008409.2 Callithrix jacchus 46 5e-29 123
WERAM-Fia-0139 ENSFALP00000011453.1 Ficedula albicollis 46 5e-29 123
WERAM-Tag-0146 ENSTGUP00000012328.1 Taeniopygia guttata 46 5e-29 123
WERAM-Eqc-0098 ENSECAP00000011591.1 Equus caballus 46 5e-29 123
WERAM-Orc-0004 ENSOCUP00000000521.2 Oryctolagus cuniculus 46 5e-29 123
WERAM-Ect-0064 ENSETEP00000006883.1 Echinops telfairi 46 5e-29 123
WERAM-Caf-0048 ENSCAFP00000006011.3 Canis familiaris 46 5e-29 123
WERAM-Ova-0099 ENSOARP00000010190.1 Ovis aries 46 5e-29 123
WERAM-Tas-0085 ENSTSYP00000008588.1 Tarsius syrichta 46 5e-29 123
WERAM-Paa-0030 ENSPANP00000015145.1 Papio anubis 46 5e-29 123
WERAM-Chs-0191 ENSCSAP00000011772.1 Chlorocebus sabaeus 46 5e-29 123
WERAM-Ict-0111 ENSSTOP00000011457.2 Ictidomys tridecemlineatus 46 5e-29 123
WERAM-Gaga-0137 ENSGALP00000024133.3 Gallus gallus 46 5e-29 123
WERAM-Loa-0063 ENSLAFP00000004670.4 Loxodonta africana 46 5e-29 123
WERAM-Ora-0034 ENSOANP00000005760.2 Ornithorhynchus anatinus 46 5e-29 123
WERAM-Cap-0156 ENSCPOP00000012920.2 Cavia porcellus 46 5e-29 123
WERAM-Ran-0006 ENSRNOP00000000742.6 Rattus norvegicus 46 5e-29 123
WERAM-Hos-0228 ENSP00000430432.1 Homo sapiens 46 5e-29 123
WERAM-Sah-0134 ENSSHAP00000014467.1 Sarcophilus harrisii 46 5e-29 123
WERAM-Mod-0165 ENSMODP00000022264.3 Monodelphis domestica 46 5e-29 123
WERAM-Meg-0131 ENSMGAP00000014157.2 Meleagris gallopavo 46 5e-29 123
WERAM-Mum-0029 ENSMUSP00000019911.7 Mus musculus 46 5e-29 123
WERAM-Leo-0176 ENSLOCP00000020984.1 Lepisosteus oculatus 45 5e-29 123
WERAM-Ere-0068 ENSEEUP00000005465.1 Erinaceus europaeus 46 5e-29 123
WERAM-Sus-0028 ENSSSCP00000004781.2 Sus scrofa 46 5e-29 123
WERAM-Anp-0059 ENSAPLP00000006605.1 Anas platyrhynchos 46 6e-29 123
WERAM-Poa-0153 ENSPPYP00000018964.2 Pongo abelii 46 6e-29 123
WERAM-Mup-0118 ENSMPUP00000010193.1 Mustela putorius furo 46 6e-29 123
WERAM-Nol-0145 ENSNLEP00000015855.1 Nomascus leucogenys 46 6e-29 123
WERAM-Aim-0151 ENSAMEP00000013919.1 Ailuropoda melanoleuca 46 6e-29 123
WERAM-Dio-0132 ENSDORP00000012520.1 Dipodomys ordii 46 6e-29 123
WERAM-Gog-0059 ENSGGOP00000005320.2 Gorilla gorilla 46 7e-29 123
WERAM-Pat-0155 ENSPTRP00000049696.3 Pan troglodytes 46 7e-29 123
WERAM-Chh-0102 ENSCHOP00000011659.1 Choloepus hoffmanni 46 7e-29 123
WERAM-Dan-0143 ENSDNOP00000031144.1 Dasypus novemcinctus 46 8e-29 122
WERAM-Xet-0050 ENSXETP00000015978.3 Xenopus tropicalis 45 2e-28 121
WERAM-Bot-0111 ENSBTAP00000015734.4 Bos taurus 46 3e-28 120
WERAM-Fec-0156 ENSFCAP00000015379.2 Felis catus 45 5e-28 120
WERAM-Ptv-0152 ENSPVAP00000012567.1 Pteropus vampyrus 48 2e-27 117
WERAM-Mam-0083 ENSMMUP00000013015.2 Macaca mulatta 48 2e-27 117
WERAM-Otg-0072 ENSOGAP00000005101.2 Otolemur garnettii 48 2e-27 117
WERAM-Ocp-0006 ENSOPRP00000000780.1 Ochotona princeps 48 2e-27 117
WERAM-Pem-0096 ENSPMAP00000010023.1 Petromyzon marinus 42 3e-27 117
WERAM-Prc-0089 ENSPCAP00000007999.1 Procavia capensis 52 4e-27 117
WERAM-Mim-0092 ENSMICP00000008598.1 Microcebus murinus 48 4e-27 117
WERAM-Cii-0014 ENSCINP00000005410.3 Ciona intestinalis 42 6e-27 116
WERAM-Lep-0023 LPERR02G07360.1 Leersia perrieri 45 9e-27 115
WERAM-Scs-0023 EDO03342 Sclerotinia sclerotiorum 41 1e-26 115
WERAM-Lac-0128 ENSLACP00000015194.1 Latimeria chalumnae 45 3e-26 114
WERAM-Ors-0059 OS06T0583400-01 Oryza sativa 42 7e-26 113
WERAM-Asm-0120 ENSAMXP00000012237.1 Astyanax mexicanus 43 1e-25 112
WERAM-Gag-0026 GGTG_08607T0 Gaeumannomyces graminis 38 1e-25 112
WERAM-Coi-0024 EAS33504 Coccidioides immitis 39 1e-25 112
WERAM-Map-0015 MAPG_05105T0 Magnaporthe poae 38 1e-25 112
WERAM-Asni-0020 CADANGAP00005938 Aspergillus niger 41 2e-25 111
WERAM-Trr-0017 EGR48353 Trichoderma reesei 38 2e-25 111
WERAM-Usm-0008 UM01352P0 Ustilago maydis 38 3e-25 111
WERAM-Asfu-0015 CADAFUAP00003503 Aspergillus fumigatus 41 4e-25 110
WERAM-Chg-0005 EAQ93036 Chaetomium globosum 38 4e-25 110
WERAM-Trv-0003 EHK19072 Trichoderma virens 38 5e-25 110
WERAM-Scj-0003 EEB05565 Schizosaccharomyces japonicus 39 6e-25 110
WERAM-Asf-0020 CADAFLAP00008921 Aspergillus flavus 39 7e-25 109
WERAM-Asc-0037 CADACLAP00008612 Aspergillus clavatus 40 8e-25 109
WERAM-Ast-0010 CADATEAP00004306 Aspergillus terreus 39 2e-24 108
WERAM-Mao-0017 MGG_05857T0 Magnaporthe oryzae 37 2e-24 108
WERAM-Asn-0024 CADANIAP00005952 Aspergillus nidulans 38 3e-24 107
WERAM-Spr-0005 CBQ70764 Sporisorium reilianum 38 4e-24 107
WERAM-Ved-0020 EGY15146 Verticillium dahliae 37 1e-23 105
WERAM-Drm-0018 FBpp0073173 Drosophila melanogaster 43 1e-23 105
WERAM-Tum-0029 CAZ85499 Tuber melanosporum 36 2e-23 104
WERAM-Cis-0077 ENSCSAVP00000016740.1 Ciona savignyi 38 2e-23 104
WERAM-Crn-0033 AAW45078 Cryptococcus neoformans 47 7e-23 103
WERAM-Hov-0001 MLOC_10109.1 Hordeum vulgare 41 7e-23 103
WERAM-Cae-0007 R06C1.1.2 Caenorhabditis elegans 39 1e-22 102
WERAM-Scp-0033 SPBC36.05c.1:pep Schizosaccharomyces pombe 38 1e-22 102
Created Date 25-Jun-2016