| Tag |
Content |
| WERAM ID |
WERAM-Pot-0020 |
| Ensembl Protein ID |
POPTR_0001s46430.1 |
| Gene Name |
POPTR_0001s46430g |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
2.20e-161 |
537.8 |
6 |
317 |
|
| Organism |
Populus trichocarpa |
| Domain Profile |
HDAC Class-I
class-1.txt 2 kvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedc 92
++ay+yd dvg++++g +hpmkp+rl++th+Lvl+y+l+kk+ei++p+ka el++fhse+y+efl++++p++++ ++ el+++n+gedc
POPTR_0001s46430.1 6 RIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSEDYVEFLHRITPDTQHLFAGELARYNLGEDC 96
689**************************************************************************************** PP
class-1.txt 93 PvfdglfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlhhGDgveeafyttd 183
Pvf++lfe+cq+++G++++aa++Ln++ +diainwaGGlhhakk+ asGfcy+nD+vl+ilellk+h rvlyidid+hhGDgveeafy+td
POPTR_0001s46430.1 97 PVFENLFEFCQIYAGGTIDAAHRLNNQLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVEEAFYFTD 187
******************************************************************************************* PP
class-1.txt 184 rvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikgh 274
rvmtvsfhkyg+ ffPgtGd+++ g+ +gk+ya+nvPlkdgidD+s++++fk++iskv+e+++P a+vlqcGaDslagDrlg+fnlsi+gh
POPTR_0001s46430.1 188 RVMTVSFHKYGDMFFPGTGDVKELGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGH 278
******************************************************************************************* PP
class-1.txt 275 aecvkfvksfnlpllvlGGGGYtlrnvaRcwtyetavvl 313
aecv+fvk+fnlpllv GGGGYt++nvaRcwt+et+v+l
POPTR_0001s46430.1 279 AECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGVLL 317
*************************************97 PP
|
Protein Sequence
(Fasta) | MRSKDRIAYF YDGDVGSVYF GPNHPMKPHR LCMTHHLVLS YELHKKMEIY RPHKAYPVEL 60
AQFHSEDYVE FLHRITPDTQ HLFAGELARY NLGEDCPVFE NLFEFCQIYA GGTIDAAHRL 120
NNQLCDIAIN WAGGLHHAKK CGASGFCYIN DLVLGILELL KHHARVLYID IDVHHGDGVE 180
EAFYFTDRVM TVSFHKYGDM FFPGTGDVKE LGEREGKFYA INVPLKDGID DTSFTRLFKT 240
IISKVVETYQ PGAIVLQCGA DSLAGDRLGC FNLSIDGHAE CVRFVKKFNL PLLVTGGGGY 300
TKENVARCWT VETGVLLDTE LPNEIPENEY IKYFAPDYSL KSPGGLMENL NSKSYLSTIK 360
MQVLENLRCI QHAPSVQMQE VPPDFFIPDF DEDEQNPDER MDQHTQDKQI QRDDEYYEGD 420
NDNDHADGS 429Protein Fasta Sequence
>POPTR_0001s46430.1|Class-I|Populus trichocarpa
MRSKDRIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSEDYVEFLHRITPDTQHLFAGELARYNLGEDCPVFENLFEFCQIYAGGTIDAAHRLNNQLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDMFFPGTGDVKELGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPDYSLKSPGGLMENLNSKSYLSTIKMQVLENLRCIQHAPSVQMQEVPPDFFIPDFDEDEQNPDERMDQHTQDKQIQRDDEYYEGDNDNDHADGS |
Nucleotide Sequence
(Fasta) | GAAAAACCCA TCATTTTCGG CTAATTTTTT CTCCAAGAGA ATGCGCTCCA AAGACAGAAT 60
TGCCTATTTC TATGATGGTG ATGTGGGCAG TGTTTATTTT GGACCAAACC ATCCAATGAA 120
GCCACACAGA CTTTGTATGA CACACCATCT TGTTCTCTCT TATGAGCTAC ATAAGAAGAT 180
GGAAATTTAT AGACCACACA AGGCATATCC TGTTGAGCTT GCTCAGTTTC ATTCCGAGGA 240
TTATGTTGAA TTTTTGCATC GGATTACGCC GGATACTCAG CACTTGTTCG CGGGGGAATT 300
GGCTAGATAT AACCTTGGAG AAGATTGCCC TGTCTTTGAA AACTTATTTG AATTTTGTCA 360
GATTTATGCT GGTGGAACTA TAGATGCTGC ACATAGGTTG AACAATCAAC TGTGTGACAT 420
TGCTATAAAT TGGGCCGGTG GATTACATCA TGCAAAAAAG TGCGGGGCAT CTGGTTTTTG 480
TTACATCAAT GACCTGGTTT TGGGGATTTT GGAGCTTCTG AAACACCATG CTCGTGTTCT 540
GTACATTGAT ATAGACGTTC ATCATGGTGA TGGTGTTGAA GAAGCCTTTT ATTTCACTGA 600
CAGGGTGATG ACTGTGAGTT TTCACAAGTA TGGAGATATG TTCTTTCCTG GAACTGGTGA 660
TGTTAAGGAA CTAGGAGAAA GAGAAGGAAA ATTTTATGCT ATAAATGTTC CACTGAAAGA 720
TGGAATCGAT GACACTAGCT TCACTCGACT ATTTAAAACA ATCATTTCCA AGGTTGTAGA 780
AACTTATCAG CCAGGTGCAA TAGTTCTTCA ATGTGGAGCA GATTCGTTGG CTGGGGACCG 840
CTTGGGCTGC TTCAATCTTT CCATTGATGG GCATGCAGAA TGTGTTAGGT TTGTGAAGAA 900
ATTCAACTTG CCCTTGTTGG TTACAGGAGG TGGGGGATAC ACAAAAGAGA ATGTTGCTCG 960
ATGTTGGACC GTTGAAACAG GAGTTCTTTT AGACACAGAA CTGCCCAATG AGATTCCAGA 1020
AAACGAGTAT ATTAAATATT TTGCCCCTGA TTATTCATTG AAAAGTCCTG GTGGACTCAT 1080
GGAGAACTTA AATAGCAAAT CTTATCTTAG CACAATCAAA ATGCAAGTAC TAGAGAATCT 1140
TCGTTGCATC CAACATGCTC CAAGTGTACA GATGCAAGAG GTACCTCCTG ACTTCTTCAT 1200
TCCCGATTTT GATGAAGATG AGCAAAACCC TGATGAGCGC ATGGATCAGC ATACCCAGGA 1260
CAAGCAAATC CAACGTGACG ATGAATATTA TGAAGGTGAC AATGATAACG ACCACGCAGA 1320
TGGCTCATGA
1331Nucleotide Fasta Sequence
>POPTR_0001s46430.1|Class-I|Populus trichocarpa
GAAAAACCCATCATTTTCGGCTAATTTTTTCTCCAAGAGAATGCGCTCCAAAGACAGAATTGCCTATTTCTATGATGGTGATGTGGGCAGTGTTTATTTTGGACCAAACCATCCAATGAAGCCACACAGACTTTGTATGACACACCATCTTGTTCTCTCTTATGAGCTACATAAGAAGATGGAAATTTATAGACCACACAAGGCATATCCTGTTGAGCTTGCTCAGTTTCATTCCGAGGATTATGTTGAATTTTTGCATCGGATTACGCCGGATACTCAGCACTTGTTCGCGGGGGAATTGGCTAGATATAACCTTGGAGAAGATTGCCCTGTCTTTGAAAACTTATTTGAATTTTGTCAGATTTATGCTGGTGGAACTATAGATGCTGCACATAGGTTGAACAATCAACTGTGTGACATTGCTATAAATTGGGCCGGTGGATTACATCATGCAAAAAAGTGCGGGGCATCTGGTTTTTGTTACATCAATGACCTGGTTTTGGGGATTTTGGAGCTTCTGAAACACCATGCTCGTGTTCTGTACATTGATATAGACGTTCATCATGGTGATGGTGTTGAAGAAGCCTTTTATTTCACTGACAGGGTGATGACTGTGAGTTTTCACAAGTATGGAGATATGTTCTTTCCTGGAACTGGTGATGTTAAGGAACTAGGAGAAAGAGAAGGAAAATTTTATGCTATAAATGTTCCACTGAAAGATGGAATCGATGACACTAGCTTCACTCGACTATTTAAAACAATCATTTCCAAGGTTGTAGAAACTTATCAGCCAGGTGCAATAGTTCTTCAATGTGGAGCAGATTCGTTGGCTGGGGACCGCTTGGGCTGCTTCAATCTTTCCATTGATGGGCATGCAGAATGTGTTAGGTTTGTGAAGAAATTCAACTTGCCCTTGTTGGTTACAGGAGGTGGGGGATACACAAAAGAGAATGTTGCTCGATGTTGGACCGTTGAAACAGGAGTTCTTTTAGACACAGAACTGCCCAATGAGATTCCAGAAAACGAGTATATTAAATATTTTGCCCCTGATTATTCATTGAAAAGTCCTGGTGGACTCATGGAGAACTTAAATAGCAAATCTTATCTTAGCACAATCAAAATGCAAGTACTAGAGAATCTTCGTTGCATCCAACATGCTCCAAGTGTACAGATGCAAGAGGTACCTCCTGACTTCTTCATTCCCGATTTTGATGAAGATGAGCAAAACCCTGATGAGCGCATGGATCAGCATACCCAGGACAAGCAAATCCAACGTGACGATGAATATTATGAAGGTGACAATGATAACGACCACGCAGATGGCTCATGA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
