WERAM Information

Tag Content
WERAM ID WERAM-Sus-0141
Ensembl Protein ID ENSSSCP00000023698.1
Gene Name MSH6
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSSCG00000020931.1 ENSSSCT00000028757.1 ENSSSCP00000023698.1
Status Unreviewed
Classification
Type Family E-value Score Start End
Me_Reader PWWP 2.50e-23 82.3 78 139
Organism Sus scrofa
Domain Profile
  Me_Reader PWWP
              PWWP.txt   1 agdLVwaKlkgYpwWPalvisppleakklktqeaeenkylVlFFgnkherawvkrkklvpyse 63 
                           +gdLVwaK++gYpwWP+lv+++p++++ + +++ ++ +++V+FF+++++r wv+r+ l+py++
  ENSSSCP00000023698.1  78 PGDLVWAKMEGYPWWPCLVYNHPFDGTFI-REKGKSARVHVQFFDDSPTRGWVSRRLLKPYTG 139
                           69***************************.*******************************86 PP
Protein Sequence
(Fasta)		MSRQSTLYSF FPKSPALTNA NKAPARVSSE GSAPAAAAGA SPSPGGDAAW SETGPGSGSP 60
AGSASRAEAS SSSCDFSPGD LVWAKMEGYP WWPCLVYNHP FDGTFIREKG KSARVHVQFF 120
DDSPTRGWVS RRLLKPYTGS KSKEAQKGGH FYSAKPEILR AMQRADEALN KDKIKRLELA 180
VCDEPSEPEE EEKSEEENEM ESEEEVQPKV QGSRRSSRHI KKRRVISDSE SDVGGSDVEF 240
KPDTKEEGSS DEMSSGVGDS DSEGLDSPVK IAPKRKRMVT GNGSLKRKSS RKEMPSATKR 300
AIGISSETRS TLSAFSAPQN SEPQAHISGG CDDSNRPTVW YHETLEWLKE ERRRDVHRRR 360
PDHPDFDAST LYVPEDFLNS CTPGMRKWWQ IKSQNFDLVI FYKVGKFYEL YHMDALIGVS 420
ELGLVFMKGN WAHSGFPEIA FGRYSDSLVQ KGYKVARVEQ TETPEMMEAR CRKMAHISKY 480
DRVVRREICR VITKGTQTYS VLEGDPSENY SKYLLSLKEK EDDSSGHTRV YGVCFVDTSL 540
GKFFIGQFSD DRHCSRFRTL VAHYPPVQVL FEKGSLSTET KMILKGSLSS SLQEGLIPGS 600
QFWDAGKTLR TLLEEGYFTD KLNEDSGVML PQVLKGMTSE SDSIGLTPGE KSELALSALG 660
GCVFYLKKCL IDQELLSMAN FEEYIPLDSD VVSASRPGAV FAKANQRMVL DAVTLNNLEI 720
FLNATNGSPE GTLLEKIDTC HTPFGKRLLK QWLCAPLCNP YAISDRLDAI EDLMVVPDKI 780
SEVVDLLKKL PDLERLLSKI HNVGSPLKSQ NHPDSRAIMY EETTYSKKKI IDFLSALEGF 840
KVICKIRGIM EEVIDDFKSK ILKQVLTLQT KNPEGRFPDL TVELNRWDTA FDHEKARKTG 900
LITPKAGFDS DYDQALADIR ENEQSLLEYL EKQRSRIGCR TIVYWGIGRN RYQLEIPENF 960
TTRNLPEEYE LKSTKKGCKR YWTKTIEKKL ANLINAEERR DVSLKDCMRR LFYNFDKNYK 1020
DWQAAVECIA VLDVLLCLAN YSRGGDGPMC RPVILLPGED TPPFLYLKGS RHPCITKTFF 1080
GDDFIPNDIL IGCEEEEEEN DKAYCVLVTG PNMGGKSTLM RQAGLLAVMA QMGCYVPAEV 1140
CRLTPIDRVF TRLGASDRIM SGESTFFVEL SETASILTHA TAHSLVLVDE LGRGTATFDG 1200
TAIANAVVKE LAENIKCRTL FSTHYHSLVE DYSQNVAVRL GHMACMVENE CEDPSQETIT 1260
FLYKFIKGAC PKSYGFNAAR LANLPEEVIQ KGHRKAREFE KMTQSLRLFR EVCLASERST 1320
VDAEAVHKLL TLME 1334
Nucleotide Sequence
(Fasta)		ATGTCGCGAC AGAGCACGCT GTACAGCTTC TTCCCCAAGT CTCCTGCGCT GACTAATGCC 60
AACAAAGCCC CAGCCAGGGT CTCAAGTGAA GGCAGCGCCC CCGCCGCTGC CGCCGGGGCC 120
TCTCCTTCCC CAGGCGGGGA TGCGGCCTGG AGCGAGACTG GGCCTGGCTC GGGGTCCCCG 180
GCGGGCTCCG CGTCGCGGGC TGAAGCGAGC AGCAGTTCTT GTGACTTCTC ACCAGGTGAT 240
TTGGTTTGGG CCAAGATGGA GGGTTACCCC TGGTGGCCTT GCCTTGTTTA CAACCACCCT 300
TTTGATGGAA CATTCATCCG GGAGAAAGGA AAGTCTGCCC GAGTTCATGT ACAGTTTTTT 360
GATGACAGCC CAACAAGAGG CTGGGTTAGC AGGAGGCTAT TAAAGCCATA TACAGGTTCA 420
AAATCAAAGG AAGCCCAGAA AGGAGGTCAT TTTTACAGTG CAAAGCCTGA AATACTCAGA 480
GCAATGCAAC GTGCAGATGA AGCCTTGAAT AAAGACAAGA TTAAGAGGCT TGAATTGGCG 540
GTGTGTGATG AGCCCTCAGA ACCAGAGGAG GAAGAAAAGA GTGAAGAAGA AAATGAAATG 600
GAGAGTGAAG AGGAAGTACA GCCTAAAGTG CAAGGATCCA GGCGAAGTAG CCGCCATATA 660
AAAAAACGAA GGGTCATATC AGACTCTGAG AGTGATGTTG GTGGCTCTGA CGTGGAATTC 720
AAGCCAGACA CTAAGGAGGA AGGAAGCAGT GATGAAATGA GCAGTGGAGT GGGAGATAGC 780
GACAGTGAAG GCCTGGACAG CCCTGTCAAA ATTGCTCCAA AGCGTAAGAG AATGGTAACT 840
GGAAATGGCT CCCTCAAAAG GAAAAGTTCA AGGAAGGAAA TGCCCTCAGC CACCAAACGA 900
GCAATTGGCA TTTCATCAGA AACCAGGAGT ACTTTGAGTG CTTTCTCTGC CCCTCAAAAT 960
TCTGAACCCC AGGCCCACAT TAGCGGAGGA TGTGATGACA GCAACCGCCC CACTGTCTGG 1020
TATCATGAAA CTTTAGAGTG GCTCAAGGAG GAAAGGAGGA GAGATGTGCA CAGGAGGCGA 1080
CCCGATCACC CTGATTTTGA TGCATCCACC CTCTACGTGC CTGAGGACTT CCTTAATTCC 1140
TGTACGCCTG GGATGAGGAA GTGGTGGCAA ATTAAGTCGC AGAACTTTGA TCTTGTCATA 1200
TTTTATAAAG TGGGGAAGTT CTATGAGCTG TACCACATGG ATGCTCTTAT TGGAGTTAGT 1260
GAACTAGGGC TTGTATTCAT GAAAGGCAAC TGGGCCCATT CTGGTTTCCC TGAAATTGCA 1320
TTTGGCCGAT ATTCAGATTC CCTGGTTCAG AAGGGCTATA AAGTAGCACG AGTGGAACAG 1380
ACTGAGACCC CGGAAATGAT GGAGGCACGA TGCCGAAAGA TGGCACATAT ATCGAAGTAT 1440
GATCGAGTGG TGAGGAGGGA GATCTGTAGG GTCATTACCA AGGGCACACA GACCTACAGT 1500
GTGCTGGAAG GTGACCCCTC TGAGAACTAC AGTAAGTATC TTCTTAGCCT CAAAGAAAAA 1560
GAGGATGATT CTTCCGGCCA CACTCGAGTG TACGGTGTAT GCTTTGTTGA CACCTCTCTG 1620
GGAAAGTTCT TTATAGGTCA GTTTTCAGAT GACCGCCATT GTTCCAGGTT CAGGACTCTA 1680
GTGGCACACT ATCCGCCAGT TCAAGTGTTG TTTGAGAAAG GAAGTCTCTC AACGGAAACG 1740
AAGATGATTC TGAAGGGTTC ATTATCCTCT TCTCTTCAGG AAGGTCTGAT ACCAGGCTCC 1800
CAGTTTTGGG ATGCAGGCAA AACTTTGAGA ACTCTCCTTG AAGAAGGATA TTTTACAGAC 1860
AAGTTGAATG AAGACAGTGG GGTGATGTTA CCCCAGGTGC TTAAAGGTAT GACATCAGAG 1920
TCTGATTCTA TTGGGTTGAC ACCAGGAGAG AAGAGTGAAT TGGCCCTCTC TGCTCTAGGT 1980
GGTTGTGTCT TCTACCTCAA AAAATGCCTT ATTGATCAGG AGCTTTTATC AATGGCTAAT 2040
TTTGAAGAAT ATATTCCCTT GGATTCTGAT GTGGTCAGTG CTTCAAGACC TGGTGCTGTC 2100
TTTGCTAAAG CCAATCAACG AATGGTGCTA GATGCTGTGA CATTAAACAA CTTGGAGATT 2160
TTTTTGAACG CAACAAATGG TTCTCCTGAA GGGACCCTGC TAGAGAAGAT TGATACTTGC 2220
CATACTCCCT TTGGCAAGCG GCTCCTAAAG CAATGGCTTT GTGCCCCCCT CTGTAACCCT 2280
TATGCTATCA GTGATCGTCT AGACGCCATA GAAGACCTCA TGGTTGTGCC TGACAAAATC 2340
TCTGAGGTTG TAGACCTTCT AAAGAAGCTT CCAGACCTTG AGCGGCTACT GAGTAAAATT 2400
CATAATGTTG GGTCTCCCCT GAAGAGCCAG AACCACCCAG ATAGCAGGGC TATAATGTAT 2460
GAAGAAACCA CATACAGCAA AAAAAAGATT ATTGATTTTC TTTCTGCTCT GGAAGGATTT 2520
AAAGTAATAT GTAAAATTAG AGGGATTATG GAAGAAGTCA TTGATGACTT TAAGTCTAAA 2580
ATCCTTAAGC AGGTCCTTAC TCTGCAGACA AAAAATCCTG AAGGTCGCTT TCCTGATTTG 2640
ACTGTAGAAC TGAACCGATG GGATACAGCC TTTGACCATG AAAAGGCTCG AAAGACTGGA 2700
CTCATTACTC CTAAAGCAGG ATTTGACTCT GATTATGACC AAGCTCTTGC TGACATAAGA 2760
GAAAATGAAC AGAGCCTCCT AGAATACTTG GAGAAACAGC GCAGTCGAAT TGGCTGTAGG 2820
ACCATAGTCT ACTGGGGGAT TGGTAGGAAT CGTTACCAGT TGGAAATTCC AGAGAATTTC 2880
ACCACCCGTA ATTTGCCAGA AGAATATGAG TTGAAATCCA CCAAGAAGGG CTGTAAACGA 2940
TACTGGACCA AAACAATTGA GAAGAAGTTG GCTAATCTGA TAAATGCTGA AGAACGGAGA 3000
GATGTTTCAC TGAAGGACTG CATGCGACGA CTATTTTATA ACTTTGATAA AAATTACAAG 3060
GACTGGCAGG CTGCTGTAGA GTGCATCGCA GTGTTGGATG TCTTATTGTG CCTGGCTAAC 3120
TACAGTCGAG GGGGTGATGG TCCTATGTGT CGTCCAGTAA TTCTGTTGCC AGGAGAAGAC 3180
ACTCCTCCCT TTCTGTACCT TAAAGGATCA CGCCATCCCT GCATTACAAA GACTTTTTTT 3240
GGTGATGACT TTATTCCTAA TGACATTCTC ATAGGCTGTG AGGAAGAAGA GGAGGAAAAT 3300
GACAAAGCTT ATTGTGTGCT TGTTACTGGG CCAAATATGG GGGGCAAGTC TACACTTATG 3360
AGACAGGCTG GCCTATTAGC TGTAATGGCC CAGATGGGTT GTTATGTACC AGCTGAAGTG 3420
TGCAGGCTCA CACCAATTGA TAGAGTGTTT ACTAGACTTG GTGCCTCAGA CAGAATAATG 3480
TCAGGTGAAA GTACATTTTT TGTTGAATTG AGTGAAACTG CCAGTATTCT TACACATGCA 3540
ACAGCACATT CTCTGGTGCT TGTGGATGAA TTAGGAAGAG GTACTGCAAC ATTTGATGGG 3600
ACAGCAATAG CAAATGCTGT TGTTAAAGAA CTGGCTGAGA ATATAAAGTG TCGTACGTTG 3660
TTTTCTACCC ACTACCATTC ATTAGTTGAA GACTATTCTC AAAATGTTGC AGTGCGCCTG 3720
GGACACATGG CATGCATGGT AGAAAATGAA TGCGAGGATC CCAGCCAGGA GACTATTACC 3780
TTCCTCTATA AATTCATTAA AGGAGCTTGT CCTAAAAGCT ATGGCTTTAA TGCAGCAAGG 3840
CTTGCTAATC TTCCAGAGGA GGTTATTCAA AAGGGACATA GAAAAGCAAG AGAATTCGAG 3900
AAGATGACTC AGTCATTACG ATTATTTCGG GAAGTTTGTC TGGCTAGTGA AAGGTCGACT 3960
GTAGATGCTG AAGCTGTCCA TAAGTTGCTG ACTTTGATGG AG 4003
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bot-0012 ENSBTAP00000001867.5 Bos taurus 92 0.0 2358
WERAM-Aim-0076 ENSAMEP00000006662.1 Ailuropoda melanoleuca 91 0.0 2330
WERAM-Ova-0042 ENSOARP00000005406.1 Ovis aries 92 0.0 2324
WERAM-Mup-0123 ENSMPUP00000010923.1 Mustela putorius furo 90 0.0 2319
WERAM-Hos-0089 ENSP00000234420.4 Homo sapiens 90 0.0 2316
WERAM-Chs-0168 ENSCSAP00000009745.1 Chlorocebus sabaeus 90 0.0 2314
WERAM-Mam-0208 ENSMMUP00000030085.2 Macaca mulatta 90 0.0 2313
WERAM-Myl-0101 ENSMLUP00000008006.2 Myotis lucifugus 90 0.0 2308
WERAM-Dan-0137 ENSDNOP00000026714.1 Dasypus novemcinctus 89 0.0 2303
WERAM-Tut-0091 ENSTTRP00000007640.1 Tursiops truncatus 90 0.0 2300
WERAM-Paa-0131 ENSPANP00000007626.1 Papio anubis 90 0.0 2296
WERAM-Nol-0087 ENSNLEP00000010403.1 Nomascus leucogenys 93 0.0 2289
WERAM-Otg-0214 ENSOGAP00000021215.1 Otolemur garnettii 89 0.0 2288
WERAM-Ptv-0116 ENSPVAP00000010278.1 Pteropus vampyrus 93 0.0 2288
WERAM-Poa-0108 ENSPPYP00000013873.2 Pongo abelii 90 0.0 2287
WERAM-Pat-0096 ENSPTRP00000020434.4 Pan troglodytes 93 0.0 2275
WERAM-Caf-0034 ENSCAFP00000003882.3 Canis familiaris 94 0.0 2274
WERAM-Loa-0023 ENSLAFP00000001328.3 Loxodonta africana 91 0.0 2257
WERAM-Ict-0166 ENSSTOP00000016600.1 Ictidomys tridecemlineatus 91 0.0 2252
WERAM-Orc-0143 ENSOCUP00000012569.2 Oryctolagus cuniculus 88 0.0 2246
WERAM-Prc-0145 ENSPCAP00000013528.1 Procavia capensis 88 0.0 2236
WERAM-Gog-0195 ENSGGOP00000018924.1 Gorilla gorilla 87 0.0 2222
WERAM-Cap-0004 ENSCPOP00000000836.2 Cavia porcellus 88 0.0 2188
WERAM-Fec-0079 ENSFCAP00000006578.2 Felis catus 90 0.0 2144
WERAM-Ran-0105 ENSRNOP00000021923.6 Rattus norvegicus 85 0.0 2131
WERAM-Mum-0014 ENSMUSP00000005503.3 Mus musculus 86 0.0 2131
WERAM-Sah-0081 ENSSHAP00000009277.1 Sarcophilus harrisii 80 0.0 2001
WERAM-Mod-0012 ENSMODP00000001344.2 Monodelphis domestica 80 0.0 1989
WERAM-Pes-0030 ENSPSIP00000005328.1 Pelodiscus sinensis 71 0.0 1746
WERAM-Meg-0053 ENSMGAP00000005001.2 Meleagris gallopavo 69 0.0 1728
WERAM-Lac-0149 ENSLACP00000017187.1 Latimeria chalumnae 64 0.0 1689
WERAM-Anp-0154 ENSAPLP00000015904.1 Anas platyrhynchos 73 0.0 1612
WERAM-Ocp-0051 ENSOPRP00000004458.1 Ochotona princeps 91 0.0 1602
WERAM-Gaga-0092 ENSGALP00000038835.2 Gallus gallus 72 0.0 1591
WERAM-Caj-0115 ENSCJAP00000020345.2 Callithrix jacchus 83 0.0 1590
WERAM-Xet-0147 ENSXETP00000049000.3 Xenopus tropicalis 71 0.0 1573
WERAM-Tag-0082 ENSTGUP00000005725.1 Taeniopygia guttata 72 0.0 1550
WERAM-Anc-0146 ENSACAP00000013849.3 Anolis carolinensis 67 0.0 1483
WERAM-Leo-0169 ENSLOCP00000020114.1 Lepisosteus oculatus 70 0.0 1467
WERAM-Orn-0123 ENSONIP00000012391.1 Oreochromis niloticus 68 0.0 1458
WERAM-Tar-0161 ENSTRUP00000034377.1 Takifugu rubripes 66 0.0 1449
WERAM-Orla-0115 ENSORLP00000013893.1 Oryzias latipes 67 0.0 1445
WERAM-Pof-0182 ENSPFOP00000015502.2 Poecilia formosa 67 0.0 1442
WERAM-Xim-0134 ENSXMAP00000011014.1 Xiphophorus maculatus 66 0.0 1431
WERAM-Ten-0197 ENSTNIP00000019708.1 Tetraodon nigroviridis 67 0.0 1417
WERAM-Gaa-0054 ENSGACP00000007160.1 Gasterosteus aculeatus 66 0.0 1417
WERAM-Gam-0173 ENSGMOP00000017118.1 Gadus morhua 66 0.0 1384
WERAM-Tub-0139 ENSTBEP00000014916.1 Tupaia belangeri 89 0.0 1377
WERAM-Pem-0088 ENSPMAP00000009336.1 Petromyzon marinus 56 0.0 1357
WERAM-Asm-0007 ENSAMXP00000001159.1 Astyanax mexicanus 65 0.0 1306
WERAM-Dio-0122 ENSDORP00000011809.1 Dipodomys ordii 90 0.0 1253
WERAM-Cis-0032 ENSCSAVP00000006844.1 Ciona savignyi 50 0.0 1029
WERAM-Ere-0070 ENSEEUP00000005594.1 Erinaceus europaeus 91 0.0 1011
WERAM-Eqc-0026 ENSECAP00000004388.1 Equus caballus 97 0.0 984
WERAM-Tas-0125 ENSTSYP00000013319.1 Tarsius syrichta 91 0.0 838
WERAM-Ect-0048 ENSETEP00000005096.1 Echinops telfairi 90 0.0 799
WERAM-Met-0160 AES82183 Medicago truncatula 41 0.0 673
WERAM-Chh-0108 ENSCHOP00000011885.1 Choloepus hoffmanni 93 8e-179 625
WERAM-Vip-0079 ENSVPAP00000007177.1 Vicugna pacos 93 2e-167 588
WERAM-Mim-0103 ENSMICP00000009629.1 Microcebus murinus 92 2e-165 581
WERAM-Dar-0233 ENSDARP00000130154.1 Danio rerio 61 5e-21 101
WERAM-Soa-0010 ENSSARP00000001031.1 Sorex araneus 48 3e-12 72.8
WERAM-Mae-0114 ENSMEUP00000010800.1 Macropus eugenii 36 2e-11 69.7
WERAM-Fia-0121 ENSFALP00000010353.1 Ficedula albicollis 42 2e-11 69.7
WERAM-Ora-0032 ENSOANP00000005155.1 Ornithorhynchus anatinus 35 4e-11 68.9
WERAM-Sei-0090 Si024584m Setaria italica 35 5e-06 51.6
Created Date 25-Jun-2016