WERAM Information


Tag Content
WERAM ID WERAM-Ran-0140
Ensembl Protein ID ENSRNOP00000052059.4
Gene Name Hdac5
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000020905.7 ENSRNOT00000055187.4 ENSRNOP00000052059.4
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 2.20e-148 494.2 508 848
HDAC Class-I 8.00e-30 105 528 817
Organism Rattus norvegicus
Domain Profile
  HDAC Class-II

           class-2.txt   2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeeles...... 84 
+g+vyd+ mlkhq++++n++ hpE+++Riq+i+srlqe+gll+k+e++++rkat++e+q+vHse h+ l++t+ +l++++l+s
ENSRNOP00000052059.4 508 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTS-PLNRQKLDSkkllgp 595
79**********************************************************************9.*************** PP
class-2.txt 85 .............ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqkl 160
++vdsd++++e++s++a+r+avG+++el++kv++gelkngfa++RPPGHHaeestamGFC+fn+va++akllqqkl
ENSRNOP00000052059.4 596 isqkmyamlpcggIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKL 684
***************************************************************************************** PP
class-2.txt 161 kvkkilivDwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawnggl...mgdaeylaafrevvl 246
+v k+livDwD+HhGnGtq++fy+dp+vly+SlHRyd+g+ffp gsga++evg g+g+g+nvNvaw+gg+ +gd eyl+afr+vv+
ENSRNOP00000052059.4 685 SVGKVLIVDWDIHHGNGTQQAFYDDPSVLYISLHRYDNGNFFP--GSGAPEEVGGGPGVGYNVNVAWTGGVdppIGDVEYLTAFRTVVM 771
*******************************************..******************************************** PP
class-2.txt 247 piakeFkPdlvlvsaGfDaaeg..dplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLl 321
pia+eF+Pd+vlvsaGfDa+eg +plgg+svta+c+++lt+ql++laggrvvl+lEGG++l+ai++a+ea+v+aLl
ENSRNOP00000052059.4 772 PIAHEFSPDVVLVSAGFDAVEGhlSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 848
**********************99***************************************************98 PP

  HDAC Class-I

           class-1.txt  19 khpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenae.............elskelkkfnvgedc.P 93 
hp r++ + + + + gl k e+++ +ka+ +e++++hse y ++l +p n + ++ l ++g d+
ENSRNOP00000052059.4 528 VHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSE-YHTLLYGTSPLNRQkldskkllgpisqKMYAMLPCGGIGVDSdT 615
56777778888888888899999999999999999999998875.55666655555555344444555433222222223345666524 PP
class-1.txt 94 vfdglfeyc..qlitGasleaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgve 176
v +++++ + ++ G +e a k+ +e + ai G hha s a Gfc+ n + ++ l++ + +vl +d d+hhG+g +
ENSRNOP00000052059.4 616 VWNEMHSSSavRMAVGCLVELAFKVAAGELKngFAIIRPPG-HHAEESTAMGFCFFNSVAITAKLLQQklSVGKVLIVDWDIHHGNGTQ 703
67777765511456788899999998877652256665555.9******************998888734567**************** PP
class-1.txt 177 eafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlkdgid....DesyekifksviskvieafePeavvlqcGaDsla 260
+afy v+ +s+h+y++ +ffPg+G ++vg + g y vnv + g+d D +y + f++v+ ++ + f+P++v++ G D++
ENSRNOP00000052059.4 704 QAFYDDPSVLYISLHRYDNgNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVDppigDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVE 792
*****************8746************************99997666669********************************8 PP
class-1.txt 261 g..Drlgefnlsikghaecvkfvks 283
g +lg ++++ + +++ + + +
ENSRNOP00000052059.4 793 GhlSPLGGYSVTARCFGHLTRQLMT 817
733589*****99999987665554 PP

Protein Sequence
(Fasta)
GAIASTEVKL RLQEFLLSKS KEPTPGGLNH SLPQHPKCWG AHHASLDQSS PPQSGPPGTP 60
PSYKLPLLGP YDSRDDFPLR KTASEPNLKV RSRLKQKVAE RRSSPLLRRK DGTVISTFKK 120
RAVEITGTGP GVSSVCNSAP GSGPSSPNSS HSTIAENGFT GSVPNIPTEM LPQHRALPLD 180
SSPNQFSLYT SPSLPNISLG LQATVTVTNS HLTASPKLST QQEAERQALQ SLRQGSTLTG 240
KFMSTSSIPG CLLGVALEGD TSPHGHASLL QHVLLLEQAR QQSTLIAVPL HGQSPLVTGE 300
RVATSMRTVG KLPRHRPLSR TQSSPLPQSP QALQQLVMQQ QHQQFLEKQK QQQMQLGKIL 360
TKTGELSRQP TTHPEETEEE LTEQQEALLG EGALTMPREG STESESTQED LEEEEDEEED 420
EEDCIQVKDE DGESGPDEGA DLEESSAGYK KLFADAQQLQ PLQVYQAPLS LATVPHQALG 480
RTQSSPAAPG SMKSPTDHPT VVKHLFTTGV VYDTFMLKHQ CMCGNTHVHP EHAGRIQSIW 540
SRLQETGLLS KCERIRGRKA TLDEIQTVHS EYHTLLYGTS PLNRQKLDSK KLLGPISQKM 600
YAMLPCGGIG VDSDTVWNEM HSSSAVRMAV GCLVELAFKV AAGELKNGFA IIRPPGHHAE 660
ESTAMGFCFF NSVAITAKLL QQKLSVGKVL IVDWDIHHGN GTQQAFYDDP SVLYISLHRY 720
DNGNFFPGSG APEEVGGGPG VGYNVNVAWT GGVDPPIGDV EYLTAFRTVV MPIAHEFSPD 780
VVLVSAGFDA VEGHLSPLGG YSVTARCFGH LTRQLMTLAG GRVVLALEGG HDLTAICDAS 840
EACVSALLSV ELQPLDEAVL QQKPSINAVA TLEKVIEIQS KHWSCVQRFA TGLGCSLREA 900
QTGEKEEAET VSAMALLSMG AEQAQAAATQ EHSPRPAEEP MEQEPAL 947
Nucleotide Sequence
(Fasta)
GGTGCCATCG CCAGCACCGA GGTAAAGCTG AGGCTCCAGG AATTCCTGTT GTCCAAGTCA 60
AAGGAGCCCA CACCAGGCGG CCTCAACCAT TCCCTCCCAC AGCACCCCAA ATGCTGGGGA 120
GCCCATCATG CTTCTTTGGA CCAGAGTTCC CCTCCCCAGA GCGGCCCTCC TGGGACGCCT 180
CCCTCCTACA AATTGCCTTT GCTTGGGCCC TATGACAGCC GTGATGACTT TCCCCTCCGT 240
AAAACGGCCT CGGAACCCAA CTTAAAAGTA CGTTCAAGGC TAAAACAGAA GGTAGCTGAG 300
AGAAGAAGCA GTCCCCTCCT GCGTCGAAAG GATGGCACTG TTATTAGTAC TTTTAAGAAG 360
AGAGCAGTCG AGATCACAGG CACAGGGCCT GGGGTGTCGT CCGTGTGTAA CAGTGCGCCT 420
GGCTCTGGCC CCAGCTCTCC CAACAGTTCC CACAGCACCA TCGCTGAGAA CGGCTTTACT 480
GGCTCAGTCC CCAACATCCC CACTGAGATG CTCCCCCAGC ACCGGGCCCT CCCTCTGGAC 540
AGTTCCCCAA ACCAGTTCAG CCTCTACACG TCTCCTTCTC TGCCTAACAT CTCCCTAGGG 600
CTGCAGGCCA CTGTCACTGT TACCAACTCG CACCTCACCG CCTCCCCGAA GCTGTCGACA 660
CAGCAGGAGG CTGAGAGGCA GGCCCTTCAG TCCCTGCGGC AGGGCAGCAC ACTGACCGGC 720
AAGTTCATGA GCACATCCTC CATCCCTGGC TGCCTGCTGG GAGTGGCCCT GGAGGGCGAC 780
ACGAGCCCCC ATGGGCACGC TTCCCTGCTG CAGCACGTTT TGCTGCTGGA GCAGGCCCGG 840
CAACAGAGCA CGCTCATAGC GGTGCCACTC CATGGGCAGT CCCCACTGGT GACGGGTGAA 900
CGTGTGGCCA CCAGCATGAG GACAGTGGGC AAGCTCCCAA GGCACCGACC TCTGAGCCGT 960
ACTCAGTCCT CGCCCCTGCC GCAGAGTCCC CAGGCCCTGC AGCAGCTGGT TATGCAGCAG 1020
CAGCACCAGC AGTTCCTAGA GAAACAGAAG CAGCAGCAGA TGCAGCTGGG CAAGATCCTT 1080
ACCAAAACTG GGGAGCTGTC AAGGCAGCCC ACCACCCACC CTGAAGAGAC AGAGGAGGAG 1140
CTGACGGAAC AGCAGGAGGC CTTGCTGGGG GAGGGGGCCC TGACCATGCC CCGGGAAGGT 1200
TCTACAGAGA GCGAGAGCAC CCAGGAAGAT CTAGAAGAGG AAGAGGATGA GGAGGAGGAC 1260
GAGGAGGACT GCATTCAGGT CAAGGATGAG GATGGCGAGA GTGGTCCTGA TGAGGGCGCA 1320
GACTTGGAGG AGTCCAGTGC TGGTTACAAA AAGTTGTTCG CAGATGCCCA GCAGTTACAG 1380
CCCCTCCAGG TATACCAGGC ACCCCTCAGC CTGGCCACTG TGCCTCATCA GGCCCTGGGC 1440
CGCACCCAGT CCTCACCTGC TGCTCCTGGG AGCATGAAGA GCCCCACAGA CCACCCCACT 1500
GTGGTGAAGC ACCTCTTCAC CACAGGTGTG GTCTATGACA CGTTCATGCT GAAGCATCAG 1560
TGTATGTGCG GAAACACACA TGTGCACCCA GAGCACGCCG GCCGCATCCA GAGCATCTGG 1620
TCCCGGCTGC AGGAAACTGG TCTGCTCAGC AAGTGTGAGC GGATCCGGGG TCGTAAAGCC 1680
ACACTGGATG AAATCCAGAC CGTGCACTCT GAGTACCACA CCCTGCTCTA TGGGACCAGT 1740
CCCCTTAACC GGCAGAAGCT GGACAGTAAG AAGCTGCTTG GCCCCATCAG CCAGAAGATG 1800
TACGCCATGC TGCCTTGTGG GGGCATTGGG GTGGACAGTG ACACTGTGTG GAATGAGATG 1860
CACTCCTCTA GTGCCGTGCG AATGGCAGTG GGCTGCCTGG TGGAGCTGGC CTTCAAGGTG 1920
GCTGCAGGAG AGCTCAAGAA TGGATTTGCC ATCATCCGAC CCCCAGGACA TCATGCTGAG 1980
GAGTCCACAG CCATGGGATT CTGCTTCTTC AACTCCGTAG CCATCACAGC TAAACTCCTG 2040
CAGCAGAAGC TGAGCGTGGG CAAGGTCCTC ATCGTGGACT GGGACATTCA CCACGGCAAT 2100
GGCACCCAGC AAGCATTTTA CGATGACCCC TCCGTGCTCT ACATCTCTTT GCATCGCTAC 2160
GACAATGGGA ACTTCTTTCC AGGCTCCGGG GCTCCTGAAG AGGTTGGTGG AGGGCCAGGT 2220
GTGGGGTACA ACGTAAATGT GGCGTGGACA GGAGGTGTGG ATCCCCCCAT TGGAGATGTG 2280
GAATACCTGA CAGCCTTCAG GACAGTAGTG ATGCCCATTG CCCACGAGTT CTCACCCGAC 2340
GTCGTTCTAG TCTCCGCTGG GTTTGATGCT GTTGAAGGAC ATCTGTCTCC ACTGGGTGGC 2400
TATTCTGTCA CCGCCAGATG TTTTGGCCAC TTGACCAGGC AGCTCATGAC ACTGGCAGGG 2460
GGCCGGGTGG TGCTGGCCCT GGAGGGAGGT CATGACTTGA CCGCCATCTG TGATGCTTCT 2520
GAGGCCTGTG TCTCGGCTCT GCTCAGCGTG GAGCTGCAGC CCTTGGATGA AGCAGTCTTG 2580
CAGCAAAAGC CCAGCATCAA TGCAGTTGCC ACACTAGAGA AAGTCATCGA GATCCAGAGC 2640
AAACACTGGA GCTGTGTACA GAGGTTTGCC ACTGGTCTGG GCTGCTCGCT GCGGGAGGCT 2700
CAGACGGGTG AGAAAGAGGA GGCCGAGACT GTGAGCGCCA TGGCCCTGCT TTCCATGGGG 2760
GCTGAGCAGG CCCAGGCTGC TGCCACTCAA GAGCACAGCC CCCGGCCAGC CGAGGAGCCC 2820
ATGGAGCAGG AGCCTGCCCT GTGACACCCA GGCCCCCCTC CCTCTGGGCT TCATCATTGT 2880
GATTTTGTTT ATTTTTTCTA TTAAAAACGA AAAGTCACAC ATTCAACAGC G 2932
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Mum-0019 ENSMUSP00000102770.2 Mus musculus 98 0.0 1575
WERAM-Ict-0187 ENSSTOP00000016795.1 Ictidomys tridecemlineatus 97 0.0 1543
WERAM-Dan-0156 ENSDNOP00000017844.1 Dasypus novemcinctus 95 0.0 1516
WERAM-Fec-0025 ENSFCAP00000002029.3 Felis catus 96 0.0 1514
WERAM-Bot-0149 ENSBTAP00000053450.2 Bos taurus 95 0.0 1513
WERAM-Otg-0108 ENSOGAP00000009396.2 Otolemur garnettii 96 0.0 1511
WERAM-Caf-0149 ENSCAFP00000021172.4 Canis familiaris 96 0.0 1509
WERAM-Ova-0067 ENSOARP00000007394.1 Ovis aries 95 0.0 1507
WERAM-Poa-0072 ENSPPYP00000009379.1 Pongo abelii 96 0.0 1504
WERAM-Hos-0075 ENSP00000468004.1 Homo sapiens 96 0.0 1504
WERAM-Tut-0123 ENSTTRP00000009926.1 Tursiops truncatus 95 0.0 1502
WERAM-Mam-0051 ENSMMUP00000008945.2 Macaca mulatta 96 0.0 1502
WERAM-Chs-0039 ENSCSAP00000014557.1 Chlorocebus sabaeus 96 0.0 1501
WERAM-Orc-0081 ENSOCUP00000007421.3 Oryctolagus cuniculus 95 0.0 1499
WERAM-Eqc-0174 ENSECAP00000019543.1 Equus caballus 96 0.0 1499
WERAM-Myl-0072 ENSMLUP00000005848.2 Myotis lucifugus 95 0.0 1498
WERAM-Dio-0163 ENSDORP00000015416.1 Dipodomys ordii 94 0.0 1496
WERAM-Caj-0108 ENSCJAP00000018977.1 Callithrix jacchus 92 0.0 1496
WERAM-Aim-0213 ENSAMEP00000019373.1 Ailuropoda melanoleuca 95 0.0 1494
WERAM-Loa-0216 ENSLAFP00000022496.1 Loxodonta africana 94 0.0 1478
WERAM-Nol-0057 ENSNLEP00000006711.1 Nomascus leucogenys 94 0.0 1470
WERAM-Mup-0103 ENSMPUP00000009452.1 Mustela putorius furo 95 0.0 1469
WERAM-Prc-0092 ENSPCAP00000008303.1 Procavia capensis 95 0.0 1422
WERAM-Mod-0095 ENSMODP00000032765.2 Monodelphis domestica 90 0.0 1416
WERAM-Cap-0214 ENSCPOP00000014276.1 Cavia porcellus 90 0.0 1414
WERAM-Ocp-0087 ENSOPRP00000007869.2 Ochotona princeps 93 0.0 1413
WERAM-Mae-0145 ENSMEUP00000015025.1 Macropus eugenii 86 0.0 1327
WERAM-Paa-0157 ENSPANP00000020771.1 Papio anubis 95 0.0 1238
WERAM-Sah-0166 ENSSHAP00000017733.1 Sarcophilus harrisii 92 0.0 1199
WERAM-Ptv-0156 ENSPVAP00000012934.1 Pteropus vampyrus 94 0.0 1161
WERAM-Sus-0129 ENSSSCP00000018401.2 Sus scrofa 95 0.0 1034
WERAM-Mim-0022 ENSMICP00000002393.1 Microcebus murinus 94 0.0 884
WERAM-Gaga-0107 ENSGALP00000017619.4 Gallus gallus 57 0.0 865
WERAM-Pat-0104 ENSPTRP00000022412.3 Pan troglodytes 57 0.0 857
WERAM-Anp-0079 ENSAPLP00000009519.1 Anas platyrhynchos 56 0.0 856
WERAM-Gog-0157 ENSGGOP00000013985.2 Gorilla gorilla 55 0.0 850
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 56 0.0 840
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 55 0.0 828
WERAM-Pes-0126 ENSPSIP00000015149.1 Pelodiscus sinensis 86 0.0 828
WERAM-Anc-0037 ENSACAP00000004435.3 Anolis carolinensis 82 0.0 816
WERAM-Leo-0108 ENSLOCP00000014009.1 Lepisosteus oculatus 55 0.0 804
WERAM-Xet-0035 ENSXETP00000010592.2 Xenopus tropicalis 54 0.0 793
WERAM-Dar-0170 ENSDARP00000100072.2 Danio rerio 78 0.0 771
WERAM-Soa-0055 ENSSARP00000005400.1 Sorex araneus 54 0.0 728
WERAM-Lac-0155 ENSLACP00000018356.1 Latimeria chalumnae 72 0.0 714
WERAM-Orn-0072 ENSONIP00000007998.1 Oreochromis niloticus 74 0.0 714
WERAM-Gaa-0053 ENSGACP00000006953.1 Gasterosteus aculeatus 71 0.0 712
WERAM-Xim-0214 ENSXMAP00000017502.1 Xiphophorus maculatus 70 0.0 707
WERAM-Ten-0172 ENSTNIP00000017010.1 Tetraodon nigroviridis 72 0.0 694
WERAM-Meg-0023 ENSMGAP00000001752.2 Meleagris gallopavo 67 0.0 693
WERAM-Pof-0205 ENSPFOP00000017061.2 Poecilia formosa 72 0.0 689
WERAM-Fia-0056 ENSFALP00000004005.1 Ficedula albicollis 69 0.0 686
WERAM-Tag-0050 ENSTGUP00000003338.1 Taeniopygia guttata 68 0.0 685
WERAM-Tar-0138 ENSTRUP00000030067.1 Takifugu rubripes 69 0.0 685
WERAM-Pem-0041 ENSPMAP00000005402.1 Petromyzon marinus 67 0.0 671
WERAM-Asm-0202 ENSAMXP00000018862.1 Astyanax mexicanus 69 0.0 640
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 68 3e-178 623
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 66 6e-174 608
WERAM-Vip-0084 ENSVPAP00000007862.1 Vicugna pacos 54 3e-159 560
WERAM-Gam-0063 ENSGMOP00000006368.1 Gadus morhua 62 4e-158 556
WERAM-Ect-0082 ENSETEP00000009275.1 Echinops telfairi 61 2e-145 514
WERAM-Drm-0080 FBpp0290513 Drosophila melanogaster 55 2e-142 504
WERAM-Tub-0129 ENSTBEP00000014362.1 Tupaia belangeri 51 2e-120 431
WERAM-Chh-0086 ENSCHOP00000009630.1 Choloepus hoffmanni 61 3e-120 430
WERAM-Cii-0046 ENSCINP00000016829.3 Ciona intestinalis 51 1e-116 418
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 51 2e-107 387
WERAM-Cis-0060 ENSCSAVP00000013851.1 Ciona savignyi 54 2e-76 285
WERAM-Sem-0022 EFJ08599 Selaginella moellendorffii 41 4e-71 267
Created Date 25-Jun-2016