WERAM Information

Tag Content
WERAM ID WERAM-Leo-0169
Ensembl Protein ID ENSLOCP00000020114.1
Gene Name msh6
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSLOCG00000016298.1 ENSLOCT00000020147.1 ENSLOCP00000020114.1
Status Unreviewed
Classification
Type Family E-value Score Start End
Me_Reader PWWP 2.00e-16 60 94 154
Organism Lepisosteus oculatus
Domain Profile
  Me_Reader PWWP
              PWWP.txt   2 gdLVwaKlkgYpwWPalvisppleakklktqeaeenkylVlFFgnkherawvkrkklvpyse 63 
                           g LVwaKl+g pwWP+lv+ +p  +++l +   ++++++V+FF++ ++r wv+ k + +y++
  ENSLOCP00000020114.1  94 GALVWAKLEGHPWWPCLVYPHPVSGEQL-RGRGQAQRLHVQFFDEPPSRGWVSTKYIREYEG 154
                           78**************************.99999************************9985 PP
Protein Sequence
(Fasta)		MAKQSNIFKF FTKSPPISSK QKTNASPVEA DLPSAVRKSN TSPKEEAKQA SSASSKKAPA 60
KSSKTTVKAG VSKLFAEKKP AVKESSESCQ FRAGALVWAK LEGHPWWPCL VYPHPVSGEQ 120
LRGRGQAQRL HVQFFDEPPS RGWVSTKYIR EYEGSDSSDA KVGGTFFSGK PVIRRAMEMA 180
DSAMKDDPGK RLQLAVCTEP SDDEDEEEME VDKSSDSDEE EVKPSRRTKR RSQESEQKTK 240
RRRITVASDS ENSDEEFRPE EAEASSDEAS SSGVDEHEVS EPETESEPES PVKPVKRKRE 300
PERASKMGSS SETPKRSPSV SVDTRSRLSA FSAPETFESQ TSSGGAAGSG ATVWDHEKLD 360
WLQDGKRKDA KRRKQTDPDY DPCTLFVPED FFNKATPGMR RWWQLKSEMF DAVLFYKVGK 420
FYELYHMDAV IGVNELGLTF MKGTWAHSGF PEIGFARFSD VLVQKGYKVA RVEQLETPEM 480
MEARCKSMVR PTKFDRVVRR EVCRVITKGT QTYSVLDGAP SESHSKYLLC IKEKAVEETS 540
GCQHTYGVSF VDTSVGKFYV GQFQDDRHCS RFRTLVAHYN PAQVLFEKGN PSAETRKILK 600
ASLASAMQEG LHPGSQFWDA SKTLKVLAEE DYFKENGTKN GDAKETLPAV LRAMTSESDT 660
LGLTPGEGYE LALSALGGCV FYLKKCLVDQ ELLSMGKFEE YVPLDVEMNQ AGGSTSFFAK 720
TQQRMVLDGV ALTNLEILQN AATGTAEGTL LERLDTCCTP FGKRLLKQWL CAPLCNPFSI 780
SDRLDALEDL MAVPDKMAES TELLKKLPDL ERLLSKIHSM GSPLKSKDHP DSKAILYEET 840
TYSKRKIADF LSALEGFKIM QQIISAFQPA VKDFRSKLLR QVVTFKAESE EGLFPDLSGE 900
LNRWDTAFDH QKARNTGIIT PKSGFDPEFD QALIGIKQTE ASLQEYLDRQ RKRLGCKAIV 960
YWGTGRNRYQ MEIPDSVTDR YVPEDYEVKS TKKGCKRYWS KDIERLLGDL VSWEEKRDGA 1020
LKDCMRRLFY NFDKNHKDWQ TAVECMAVLD VLLCLARYSQ GGDGPMCRPD VLLPEDSGSQ 1080
PFLLLSGSRH PCIAKTFFGD DFIPNDVCIG CAGGEEGEDG QASCVLVTGP NMGGKSTLMR 1140
QCGLVVILAQ LGCYVPAESF KLTPVDRVFT RLGASDRIMA GESTFFVELS ETASILHHGT 1200
CHSLVLLDEL GRGTATYDGT AIASAVVKEL AANIKCRTLF STHYHSLVED FSHYPAVRLG 1260
HMACMVENEC EDPSQETITF LYKFICGACP KSYGFNAARL ANIPEDVIQT GHRKAKEFER 1320
TTTSLRIFKQ LCSFAEDVNA DSICFSTLMK KMIAV 1355
Nucleotide Sequence
(Fasta)		TTTACCTTCC TCCTTGGGTA TTTCCCGCGA GCGCCAATAC TCCATTTGAC CCTCGGTGGA 60
GCGGAGAGGC GGATAGATAG CGTCAGGGAT GCAAGTCTAG ATTTGTAATA GTAGGTTTGA 120
TTCAGAGACT CCTAGTAACA AGCCAACAAT AAGCTAGCAT GGCCAAGCAG AGCAATATTT 180
TCAAGTTCTT TACTAAGTCA CCACCTATTT CCAGTAAGCA GAAGACTAAC GCGTCTCCTG 240
TTGAAGCGGA TCTACCGTCT GCGGTGCGCA AATCTAACAC TTCCCCCAAA GAAGAAGCGA 300
AACAAGCAAG TTCTGCAAGC AGCAAGAAAG CCCCGGCGAA GTCCAGCAAA ACAACAGTGA 360
AAGCTGGGGT CAGTAAGCTT TTTGCAGAGA AAAAGCCTGC AGTTAAAGAA AGCAGTGAGT 420
CGTGCCAGTT CCGCGCGGGG GCTCTGGTAT GGGCGAAGCT GGAGGGGCAC CCCTGGTGGC 480
CGTGCCTGGT GTACCCCCAC CCTGTGAGCG GGGAGCAGCT GCGGGGACGA GGCCAGGCGC 540
AGCGCCTGCA CGTGCAGTTC TTCGACGAGC CCCCCAGCAG GGGCTGGGTC AGCACAAAGT 600
ACATCCGGGA GTATGAGGGC TCAGACTCCA GTGATGCAAA GGTGGGTGGC ACGTTCTTCA 660
GTGGGAAGCC GGTGATCCGG AGGGCGATGG AGATGGCAGA CAGTGCCATG AAAGACGACC 720
CAGGGAAGAG ATTGCAGCTT GCGGTGTGCA CAGAGCCCTC TGACGATGAA GACGAGGAAG 780
AGATGGAGGT GGACAAATCA TCAGACAGCG ATGAGGAGGA GGTGAAGCCC AGCCGGAGGA 840
CCAAGAGGAG GAGTCAGGAG TCTGAGCAGA AGACCAAGAG GCGCCGGATC ACGGTGGCGT 900
CGGACAGCGA GAACTCGGAC GAAGAGTTCC GGCCCGAGGA GGCGGAGGCC AGCAGCGACG 960
AGGCCAGCAG CAGCGGGGTG GACGAACACG AGGTCAGCGA ACCGGAAACG GAGTCCGAGC 1020
CGGAGAGCCC CGTCAAACCC GTCAAGCGCA AGAGGGAGCC TGAAAGAGCC TCGAAGATGG 1080
GCAGTTCCTC CGAGACGCCA AAGAGATCCC CGTCCGTGTC TGTGGATACC AGGTCCAGGC 1140
TGTCGGCCTT TTCTGCTCCA GAGACTTTCG AAAGCCAGAC AAGTTCTGGG GGAGCTGCTG 1200
GCAGTGGCGC CACAGTCTGG GACCACGAAA AATTGGACTG GCTTCAGGAT GGCAAAAGAA 1260
AAGATGCCAA GAGACGGAAA CAGACAGACC CCGACTATGA TCCCTGTACT CTCTTTGTCC 1320
CAGAGGACTT CTTCAACAAA GCCACTCCTG GCATGCGCAG GTGGTGGCAG CTCAAGTCTG 1380
AGATGTTTGA TGCTGTGCTT TTCTACAAAG TGGGTAAATT CTATGAGCTG TACCACATGG 1440
ATGCTGTTAT AGGGGTGAAC GAGCTAGGGC TGACCTTCAT GAAGGGTACC TGGGCTCACT 1500
CCGGCTTCCC TGAGATTGGA TTTGCTCGCT TCTCTGATGT TCTCGTCCAA AAGGGGTACA 1560
AAGTGGCAAG AGTGGAGCAG CTGGAGACCC CAGAGATGAT GGAGGCTAGA TGCAAAAGCA 1620
TGGTACGTCC CACTAAGTTT GACAGGGTGG TGCGCAGGGA AGTGTGCAGG GTGATCACCA 1680
AAGGCACCCA GACCTACAGT GTCCTGGATG GTGCACCTTC AGAGAGCCAC AGCAAGTACC 1740
TGCTGTGTAT CAAGGAGAAG GCGGTAGAGG AGACCTCTGG GTGCCAGCAC ACCTACGGGG 1800
TGAGTTTCGT GGACACTTCG GTGGGCAAGT TCTACGTAGG TCAGTTTCAA GACGATCGCC 1860
ACTGTTCCCG TTTCAGGACT CTAGTTGCAC ACTACAATCC AGCTCAAGTG CTTTTTGAAA 1920
AGGGAAACCC CTCCGCCGAA ACTAGAAAGA TTTTGAAAGC TTCCCTGGCT TCTGCCATGC 1980
AGGAGGGTTT GCATCCTGGA TCTCAGTTCT GGGATGCTTC TAAAACACTA AAAGTCCTCG 2040
CTGAGGAGGA CTACTTTAAA GAGAACGGTA CAAAAAATGG AGATGCTAAG GAGACACTGC 2100
CTGCTGTGCT CAGAGCCATG ACCTCGGAGA GTGACACTCT GGGCCTCACA CCTGGGGAGG 2160
GGTATGAGCT GGCCTTGTCT GCGCTTGGCG GCTGTGTGTT CTACCTGAAG AAGTGTCTGG 2220
TGGACCAAGA GCTGCTGTCT ATGGGTAAAT TTGAGGAGTA TGTTCCCCTT GATGTGGAAA 2280
TGAACCAGGC TGGGGGATCC ACCAGCTTCT TTGCCAAGAC CCAGCAGCGC ATGGTGTTAG 2340
ATGGTGTTGC ACTGACTAAC CTGGAGATCT TGCAGAATGC AGCAACAGGC ACAGCAGAGG 2400
GCACCCTGCT GGAGAGGCTG GATACTTGTT GCACACCCTT TGGTAAAAGG CTCCTGAAAC 2460
AATGGTTATG TGCTCCGCTG TGCAATCCCT TCTCCATTAG TGACCGACTG GATGCCCTGG 2520
AGGATCTCAT GGCTGTCCCT GACAAAATGG CAGAATCTAC TGAGTTGTTA AAGAAGCTTC 2580
CTGACCTGGA AAGACTACTG AGCAAGATCC ATAGCATGGG CTCTCCCCTG AAAAGCAAAG 2640
ATCACCCTGA CAGTAAGGCC ATCCTGTACG AGGAGACTAC CTATAGCAAG CGTAAGATTG 2700
CAGACTTCCT TTCTGCCCTA GAAGGCTTCA AAATCATGCA GCAGATTATT TCAGCCTTTC 2760
AGCCAGCTGT GAAGGACTTC CGGTCTAAGC TGCTGAGGCA GGTGGTCACC TTTAAAGCTG 2820
AAAGTGAAGA GGGGCTTTTC CCAGACCTGT CTGGGGAGCT AAACAGGTGG GACACGGCCT 2880
TTGACCACCA GAAGGCTCGC AACACTGGCA TCATAACTCC CAAGAGTGGC TTTGACCCAG 2940
AATTTGACCA GGCTCTGATT GGAATCAAGC AAACAGAGGC CTCCCTGCAG GAGTATCTTG 3000
ACCGGCAACG CAAACGTCTG GGCTGCAAGG CTATAGTATA CTGGGGCACT GGCAGGAATC 3060
GCTACCAGAT GGAAATTCCA GACAGCGTCA CGGACAGGTA TGTGCCTGAA GACTACGAGG 3120
TCAAGTCCAC CAAGAAGGGT TGCAAGCGCT ACTGGAGCAA GGACATTGAG CGACTGCTGG 3180
GGGACTTGGT GAGCTGGGAA GAGAAGAGGG ATGGAGCACT GAAAGACTGC ATGAGGAGGC 3240
TCTTCTACAA CTTTGACAAG AATCACAAAG ACTGGCAGAC TGCAGTGGAG TGCATGGCGG 3300
TCCTAGATGT GCTGCTCTGC TTGGCCCGGT ACAGTCAGGG GGGAGACGGG CCCATGTGCC 3360
GCCCGGACGT GCTCTTACCC GAGGACTCCG GCTCGCAGCC CTTCCTCCTG CTGAGCGGCT 3420
CCCGCCACCC CTGCATCGCC AAGACGTTCT TCGGAGACGA CTTCATCCCC AACGACGTCT 3480
GCATTGGCTG TGCTGGCGGG GAGGAGGGGG AGGACGGGCA GGCGTCCTGC GTGCTGGTTA 3540
CCGGGCCGAA CATGGGTGGC AAGTCCACCC TCATGAGACA GTGTGGTCTT GTGGTCATTT 3600
TGGCCCAGCT TGGCTGCTAC GTTCCTGCAG AGAGCTTTAA GCTGACACCA GTTGACAGGG 3660
TCTTCACTAG GCTGGGAGCA TCGGACAGGA TCATGGCAGG TGAAAGTACT TTCTTTGTGG 3720
AGCTAAGTGA GACTGCAAGC ATTCTTCACC ACGGAACATG CCATTCCCTT GTGCTCCTTG 3780
ATGAATTAGG AAGGGGCACA GCTACTTATG ATGGAACTGC AATTGCAAGT GCTGTGGTTA 3840
AAGAACTGGC AGCAAACATC AAATGTCGCA CTTTGTTTTC CACCCACTAC CACTCCCTTG 3900
TGGAAGATTT CTCACACTAC CCCGCAGTGC GCCTGGGCCA CATGGCATGC ATGGTTGAGA 3960
ATGAGTGCGA AGACCCAAGC CAGGAAACTA TCACATTCCT GTACAAATTC ATTTGTGGAG 4020
CCTGCCCAAA GAGCTATGGA TTCAATGCTG CCAGACTCGC TAACATCCCA GAGGACGTCA 4080
TTCAGACTGG CCATAGGAAG GCAAAGGAAT TTGAGAGGAC CACCACCTCC CTTCGGATTT 4140
TTAAGCAGCT CTGTTCTTTT GCTGAAGACG TAAATGCTGA CTCAATTTGC TTCTCTACGC 4200
TGATGAAGAA AATGATTGCA GTTTAA 4227
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Orn-0123 ENSONIP00000012391.1 Oreochromis niloticus 71 0.0 1894
WERAM-Pof-0182 ENSPFOP00000015502.2 Poecilia formosa 70 0.0 1859
WERAM-Orla-0115 ENSORLP00000013893.1 Oryzias latipes 69 0.0 1850
WERAM-Xim-0134 ENSXMAP00000011014.1 Xiphophorus maculatus 69 0.0 1850
WERAM-Tar-0161 ENSTRUP00000034377.1 Takifugu rubripes 69 0.0 1813
WERAM-Lac-0149 ENSLACP00000017187.1 Latimeria chalumnae 68 0.0 1799
WERAM-Gam-0173 ENSGMOP00000017118.1 Gadus morhua 69 0.0 1791
WERAM-Gaa-0054 ENSGACP00000007160.1 Gasterosteus aculeatus 68 0.0 1779
WERAM-Ten-0197 ENSTNIP00000019708.1 Tetraodon nigroviridis 67 0.0 1769
WERAM-Asm-0007 ENSAMXP00000001159.1 Astyanax mexicanus 71 0.0 1746
WERAM-Xet-0147 ENSXETP00000049000.3 Xenopus tropicalis 64 0.0 1725
WERAM-Anp-0154 ENSAPLP00000015904.1 Anas platyrhynchos 67 0.0 1707
WERAM-Tag-0082 ENSTGUP00000005725.1 Taeniopygia guttata 68 0.0 1686
WERAM-Gaga-0092 ENSGALP00000038835.2 Gallus gallus 66 0.0 1670
WERAM-Pes-0030 ENSPSIP00000005328.1 Pelodiscus sinensis 67 0.0 1670
WERAM-Meg-0053 ENSMGAP00000005001.2 Meleagris gallopavo 66 0.0 1664
WERAM-Aim-0076 ENSAMEP00000006662.1 Ailuropoda melanoleuca 65 0.0 1659
WERAM-Otg-0214 ENSOGAP00000021215.1 Otolemur garnettii 65 0.0 1651
WERAM-Sah-0081 ENSSHAP00000009277.1 Sarcophilus harrisii 65 0.0 1649
WERAM-Mup-0123 ENSMPUP00000010923.1 Mustela putorius furo 61 0.0 1648
WERAM-Myl-0101 ENSMLUP00000008006.2 Myotis lucifugus 64 0.0 1642
WERAM-Mam-0208 ENSMMUP00000030085.2 Macaca mulatta 61 0.0 1640
WERAM-Bot-0012 ENSBTAP00000001867.5 Bos taurus 62 0.0 1639
WERAM-Chs-0168 ENSCSAP00000009745.1 Chlorocebus sabaeus 61 0.0 1638
WERAM-Mod-0012 ENSMODP00000001344.2 Monodelphis domestica 64 0.0 1637
WERAM-Hos-0089 ENSP00000234420.4 Homo sapiens 61 0.0 1637
WERAM-Nol-0087 ENSNLEP00000010403.1 Nomascus leucogenys 64 0.0 1637
WERAM-Pat-0096 ENSPTRP00000020434.4 Pan troglodytes 64 0.0 1636
WERAM-Ptv-0116 ENSPVAP00000010278.1 Pteropus vampyrus 61 0.0 1635
WERAM-Caf-0034 ENSCAFP00000003882.3 Canis familiaris 65 0.0 1634
WERAM-Paa-0131 ENSPANP00000007626.1 Papio anubis 61 0.0 1631
WERAM-Ict-0166 ENSSTOP00000016600.1 Ictidomys tridecemlineatus 61 0.0 1630
WERAM-Cap-0004 ENSCPOP00000000836.2 Cavia porcellus 62 0.0 1629
WERAM-Mum-0014 ENSMUSP00000005503.3 Mus musculus 65 0.0 1628
WERAM-Poa-0108 ENSPPYP00000013873.2 Pongo abelii 64 0.0 1626
WERAM-Loa-0023 ENSLAFP00000001328.3 Loxodonta africana 65 0.0 1626
WERAM-Prc-0145 ENSPCAP00000013528.1 Procavia capensis 62 0.0 1625
WERAM-Orc-0143 ENSOCUP00000012569.2 Oryctolagus cuniculus 64 0.0 1625
WERAM-Sus-0141 ENSSSCP00000023698.1 Sus scrofa 65 0.0 1623
WERAM-Ova-0042 ENSOARP00000005406.1 Ovis aries 64 0.0 1623
WERAM-Dan-0137 ENSDNOP00000026714.1 Dasypus novemcinctus 62 0.0 1619
WERAM-Ran-0105 ENSRNOP00000021923.6 Rattus norvegicus 64 0.0 1613
WERAM-Tut-0091 ENSTTRP00000007640.1 Tursiops truncatus 63 0.0 1596
WERAM-Gog-0195 ENSGGOP00000018924.1 Gorilla gorilla 60 0.0 1590
WERAM-Anc-0146 ENSACAP00000013849.3 Anolis carolinensis 61 0.0 1561
WERAM-Fec-0079 ENSFCAP00000006578.2 Felis catus 62 0.0 1514
WERAM-Pem-0088 ENSPMAP00000009336.1 Petromyzon marinus 57 0.0 1438
WERAM-Ocp-0051 ENSOPRP00000004458.1 Ochotona princeps 69 0.0 1255
WERAM-Cis-0032 ENSCSAVP00000006844.1 Ciona savignyi 44 0.0 1091
WERAM-Caj-0115 ENSCJAP00000020345.2 Callithrix jacchus 54 0.0 1076
WERAM-Dio-0122 ENSDORP00000011809.1 Dipodomys ordii 71 0.0 999
WERAM-Tub-0139 ENSTBEP00000014916.1 Tupaia belangeri 60 0.0 937
WERAM-Ere-0070 ENSEEUP00000005594.1 Erinaceus europaeus 71 0.0 809
WERAM-Eqc-0026 ENSECAP00000004388.1 Equus caballus 74 0.0 753
WERAM-Met-0160 AES82183 Medicago truncatula 40 0.0 660
WERAM-Tas-0125 ENSTSYP00000013319.1 Tarsius syrichta 68 3e-180 630
WERAM-Ect-0048 ENSETEP00000005096.1 Echinops telfairi 66 3e-170 597
WERAM-Vip-0079 ENSVPAP00000007177.1 Vicugna pacos 81 2e-135 481
WERAM-Chh-0108 ENSCHOP00000011885.1 Choloepus hoffmanni 69 1e-133 475
WERAM-Mim-0103 ENSMICP00000009629.1 Microcebus murinus 56 3e-101 367
WERAM-Dar-0233 ENSDARP00000130154.1 Danio rerio 59 2e-40 166
WERAM-Mae-0114 ENSMEUP00000010800.1 Macropus eugenii 35 5e-11 68.2
WERAM-Soa-0010 ENSSARP00000001031.1 Sorex araneus 40 2e-10 66.6
WERAM-Ora-0032 ENSOANP00000005155.1 Ornithorhynchus anatinus 43 2e-10 66.2
WERAM-Fia-0085 ENSFALP00000006989.1 Ficedula albicollis 45 2e-10 66.2
Created Date 25-Jun-2016