| Tag |
Content |
| WERAM ID |
WERAM-Brr-0156 |
| Ensembl Protein ID |
Bra031628.1-P |
| Gene Name |
HDA08 |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
8.70e-37 |
128.3 |
46 |
335 |
|
| Organism |
Brassica rapa |
| Domain Profile |
HDAC Class-I
class-1.txt 18 qkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGasleaa 113
+khp r++ + +++ +s +++ + + a ++ell+fh+ +yi+ l + +++ ++ ++ + + g +e + l +G++l+a+
Bra031628.1-P 46 EKHPENADRVRNMVSILQRGPISPRVNWLPGRLAIVSELLTFHTSDYINKLIEADKSGER--------REISAGTFMSPGSWEAALLAAGTTLSAM 133
6899999999999999999999999999999******************99766554443........3456667788999*************** PP
class-1.txt 114 kkLnkkeadiainw.aGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgveeafyttdrvmtvsfhkygeef...fPgtGd 203
+++ +++ +ia hh++ ++a G+c++n+ la+ l +rv +did+h+G+g e fy +d+v+tvs+h + ++ P G+
Bra031628.1-P 134 QHILDSHGKIAYALvRPPGHHSQPTQADGYCFLNNAALAVKLALDsgRCSRVAVVDIDVHYGNGTAEGFYRSDKVLTVSLHMNHGSWgssHPQRGS 229
**********987624567********************9765554789********************************8766553448***** PP
class-1.txt 204 lsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.....nlpllvlGGG 294
+++ g++ g y +nvPl +g D+ ye +++++ + +++f P++vvl +G Ds a D+ g l+++g+ ++ ++++ n ll++ G
Bra031628.1-P 230 VDELGEGVGLGYNLNVPLPNGTGDKGYEYAVNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQCLTMNGYRRIGQIMRAMadehsNGRLLMVQEG 325
**********************************************************************9998888886543335778******* PP
class-1.txt 295 GYtlrnvaRc 304
GY ++ a c
Bra031628.1-P 326 GYHVTYAAYC 335
***9998877 PP
|
Protein Sequence
(Fasta) | MLSSDQTSKP QSDAVDVFWH EGMLQHDAVQ GVFDTGINPG FLDVLEKHPE NADRVRNMVS 60
ILQRGPISPR VNWLPGRLAI VSELLTFHTS DYINKLIEAD KSGERREISA GTFMSPGSWE 120
AALLAAGTTL SAMQHILDSH GKIAYALVRP PGHHSQPTQA DGYCFLNNAA LAVKLALDSG 180
RCSRVAVVDI DVHYGNGTAE GFYRSDKVLT VSLHMNHGSW GSSHPQRGSV DELGEGVGLG 240
YNLNVPLPNG TGDKGYEYAV NELVVPAVRR FGPDMVVLVV GQDSSAFDPN GRQCLTMNGY 300
RRIGQIMRAM ADEHSNGRLL MVQEGGYHVT YAAYCLHAML EGVLKIPEPH LEDPVAYYPE 360
DEAVAVEAVK SIKRYHSEYV PFLRGT 386Protein Fasta Sequence
>Bra031628.1-P|Class-I|Brassica rapa
MLSSDQTSKPQSDAVDVFWHEGMLQHDAVQGVFDTGINPGFLDVLEKHPENADRVRNMVSILQRGPISPRVNWLPGRLAIVSELLTFHTSDYINKLIEADKSGERREISAGTFMSPGSWEAALLAAGTTLSAMQHILDSHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALDSGRCSRVAVVDIDVHYGNGTAEGFYRSDKVLTVSLHMNHGSWGSSHPQRGSVDELGEGVGLGYNLNVPLPNGTGDKGYEYAVNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQCLTMNGYRRIGQIMRAMADEHSNGRLLMVQEGGYHVTYAAYCLHAMLEGVLKIPEPHLEDPVAYYPEDEAVAVEAVKSIKRYHSEYVPFLRGT |
Nucleotide Sequence
(Fasta) | ATGCTCAGCT CAGATCAGAC CTCCAAACCC CAAAGCGACG CCGTAGATGT CTTCTGGCAC 60
GAAGGAATGC TCCAACACGA CGCCGTCCAA GGCGTCTTCG ACACGGGAAT CAACCCCGGA 120
TTCCTCGACG TATTGGAGAA GCACCCGGAG AACGCCGACA GAGTCAGGAA CATGGTTTCG 180
ATTCTCCAAC GTGGTCCCAT CTCTCCCCGT GTCAATTGGC TTCCCGGTCG TCTCGCAATC 240
GTCTCGGAGC TTCTAACGTT TCACACTTCA GACTACATAA ACAAGCTAAT AGAGGCAGAT 300
AAATCAGGAG AAAGGCGTGA GATTTCCGCA GGTACTTTCA TGAGTCCAGG GTCTTGGGAA 360
GCTGCGCTTC TTGCAGCCGG AACAACTCTA TCAGCAATGC AACACATTCT CGACAGCCAC 420
GGCAAAATAG CTTATGCTCT GGTTCGCCCA CCAGGCCACC ACTCTCAGCC CACTCAAGCT 480
GATGGGTATT GCTTCCTCAA CAACGCAGCT CTCGCCGTGA AGCTAGCGTT GGATTCAGGA 540
CGCTGCTCGC GAGTTGCGGT TGTTGACATC GATGTGCACT ACGGGAACGG CACAGCTGAA 600
GGGTTTTACA GGTCTGATAA GGTGCTCACG GTGTCGCTGC ATATGAACCA CGGGTCGTGG 660
GGGTCGTCTC ATCCGCAGAG AGGGTCTGTT GATGAGCTTG GTGAAGGTGT GGGGTTGGGT 720
TATAACTTGA ATGTTCCTTT ACCTAATGGC ACTGGTGACA AGGGTTATGA ATATGCGGTG 780
AATGAGCTGG TCGTTCCTGC TGTTAGGAGG TTTGGACCTG ATATGGTTGT TCTTGTTGTT 840
GGTCAAGACT CTAGCGCTTT TGATCCAAAC GGGAGACAAT GCCTGACGAT GAACGGATAC 900
AGAAGGATTG GGCAGATAAT GAGGGCAATG GCAGATGAGC ATAGCAATGG AAGGTTGCTT 960
ATGGTGCAAG AAGGAGGGTA TCATGTTACA TATGCAGCTT ACTGCCTCCA CGCCATGCTT 1020
GAAGGCGTGC TGAAGATTCC AGAACCGCAT CTTGAGGATC CGGTCGCTTA TTACCCTGAA 1080
GATGAAGCTG TTGCTGTTGA AGCTGTTAAA TCAATCAAAA GATACCACTC CGAATATGTT 1140
CCATTTCTCA GAGGAACTTG A
1162Nucleotide Fasta Sequence
>Bra031628.1-P|Class-I|Brassica rapa
ATGCTCAGCTCAGATCAGACCTCCAAACCCCAAAGCGACGCCGTAGATGTCTTCTGGCACGAAGGAATGCTCCAACACGACGCCGTCCAAGGCGTCTTCGACACGGGAATCAACCCCGGATTCCTCGACGTATTGGAGAAGCACCCGGAGAACGCCGACAGAGTCAGGAACATGGTTTCGATTCTCCAACGTGGTCCCATCTCTCCCCGTGTCAATTGGCTTCCCGGTCGTCTCGCAATCGTCTCGGAGCTTCTAACGTTTCACACTTCAGACTACATAAACAAGCTAATAGAGGCAGATAAATCAGGAGAAAGGCGTGAGATTTCCGCAGGTACTTTCATGAGTCCAGGGTCTTGGGAAGCTGCGCTTCTTGCAGCCGGAACAACTCTATCAGCAATGCAACACATTCTCGACAGCCACGGCAAAATAGCTTATGCTCTGGTTCGCCCACCAGGCCACCACTCTCAGCCCACTCAAGCTGATGGGTATTGCTTCCTCAACAACGCAGCTCTCGCCGTGAAGCTAGCGTTGGATTCAGGACGCTGCTCGCGAGTTGCGGTTGTTGACATCGATGTGCACTACGGGAACGGCACAGCTGAAGGGTTTTACAGGTCTGATAAGGTGCTCACGGTGTCGCTGCATATGAACCACGGGTCGTGGGGGTCGTCTCATCCGCAGAGAGGGTCTGTTGATGAGCTTGGTGAAGGTGTGGGGTTGGGTTATAACTTGAATGTTCCTTTACCTAATGGCACTGGTGACAAGGGTTATGAATATGCGGTGAATGAGCTGGTCGTTCCTGCTGTTAGGAGGTTTGGACCTGATATGGTTGTTCTTGTTGTTGGTCAAGACTCTAGCGCTTTTGATCCAAACGGGAGACAATGCCTGACGATGAACGGATACAGAAGGATTGGGCAGATAATGAGGGCAATGGCAGATGAGCATAGCAATGGAAGGTTGCTTATGGTGCAAGAAGGAGGGTATCATGTTACATATGCAGCTTACTGCCTCCACGCCATGCTTGAAGGCGTGCTGAAGATTCCAGAACCGCATCTTGAGGATCCGGTCGCTTATTACCCTGAAGATGAAGCTGTTGCTGTTGAAGCTGTTAAATCAATCAAAAGATACCACTCCGAATATGTTCCATTTCTCAGAGGAACTTGA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
