WERAM Information


Tag Content
WERAM ID WERAM-Bro-0161
Ensembl Protein ID Bo8g112460.1
Gene Name HDA08
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo8g112460 Bo8g112460.1 Bo8g112460.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 5.00e-91 306.8 16 344
HDAC Class-I 1.60e-37 131.2 46 335
Organism Brassica oleracea
Domain Profile
  HDAC Class-II

   class-2.txt   3 glvydekmlkhqaleenkek............hpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeeleslt 86 
+++++e ml+h+a+e+ ++ hpE+++R+++++s lq+ +++++++l +r a +el+++H+++++++l +a+ + e++e+
Bo8g112460.1 16 DVFWHEGMLQHDAVEGVFDSgldpgfldvlekHPENADRVRNMVSILQRGPIAPHVNWLPGRLAIVSELLTFHTSDYINKLIEADkSGERREI---- 108
799***************99*************************************************************999744455544.... PP
class-2.txt 87 vdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeify 183
s +++++ s++aa la+G++l++++++l+ + k+++a+vRPPGHH+++++a+G+C++nn+a+a+kl++++ +++++ +vD+DvH+GnGt e fy
Bo8g112460.1 109 --SAGTFMSPGSWEAALLAAGTTLSAMQHILDSHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALDSGQCSRVAVVDIDVHYGNGTAEGFY 203
..4589******************************************************************************************* PP
class-2.txt 184 kdpkvlylSlHRydkgsffpesgs..gavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvta 278
+++kvl++SlH +++gs+ +s+ g+vde+geg g+g+n+Nv++++g+ gd+ y++a +e+v+p++++F Pd+v++ +G+D++++dp+g++s+t+
Bo8g112460.1 204 RSDKVLTVSLH-MNHGSW-GSSHPqrGSVDEIGEGVGLGYNLNVPLPNGT-GDKGYEYAVNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTM 297
***********.*****5.5444336*********************998.********************************************** PP
class-2.txt 279 kcyatltkqllkl....aggrvvlvlEGGynlkaiaeaveavvkaLl 321
++y+++ + ++ + ++gr+++v EGGy++++ a++ +a+++++l
Bo8g112460.1 298 NGYRRIGQIIRAMaeehSNGRLLMVQEGGYHVTYAAYCLHAMLEGVL 344
*********9999888889************************9987 PP

  HDAC Class-I

   class-1.txt  18 qkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGasleaak 114
+khp r++ + +++ + +++ + + a ++ell+fh+ +yi+ l + +++ ++ ++ + + g +e + l +G++l+a++
Bo8g112460.1 46 EKHPENADRVRNMVSILQRGPIAPHVNWLPGRLAIVSELLTFHTSDYINKLIEADKSGER--------REISAGTFMSPGSWEAALLAAGTTLSAMQ 134
67899999999999999999999999999999*****************99766554443........3456667788999**************** PP
class-1.txt 115 kLnkkeadiainw.aGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgveeafyttdrvmtvsfhkygeef...fPgtGdls 205
++ +++ +ia hh++ ++a G+c++n+ la+ l + +rv +did+h+G+g e fy +d+v+tvs+h + ++ P G+++
Bo8g112460.1 135 HILDSHGKIAYALvRPPGHHSQPTQADGYCFLNNAALAVKLALDsgQCSRVAVVDIDVHYGNGTAEGFYRSDKVLTVSLHMNHGSWgssHPQRGSVD 231
*********987624567********************97655547899*******************************8766553448******* PP
class-1.txt 206 dvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.....nlpllvlGGGGYt 297
++g++ g y +nvPl +g D+ ye +++++ + +++f P++vvl +G Ds a D+ g +l+++g+ ++ ++++ n ll++ GGY
Bo8g112460.1 232 EIGEGVGLGYNLNVPLPNGTGDKGYEYAVNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTMNGYRRIGQIIRAMaeehsNGRLLMVQEGGYH 328
********************************************************************8776555554322235789********** PP
class-1.txt 298 lrnvaRc 304
++ a c
Bo8g112460.1 329 VTYAAYC 335
9998877 PP

Protein Sequence
(Fasta)
MFSSDQTFKP QTDAVDVFWH EGMLQHDAVE GVFDSGLDPG FLDVLEKHPE NADRVRNMVS 60
ILQRGPIAPH VNWLPGRLAI VSELLTFHTS DYINKLIEAD KSGERREISA GTFMSPGSWE 120
AALLAAGTTL SAMQHILDSH GKIAYALVRP PGHHSQPTQA DGYCFLNNAA LAVKLALDSG 180
QCSRVAVVDI DVHYGNGTAE GFYRSDKVLT VSLHMNHGSW GSSHPQRGSV DEIGEGVGLG 240
YNLNVPLPNG TGDKGYEYAV NELVVPAVRR FGPDMVVLVV GQDSSAFDPN GRQSLTMNGY 300
RRIGQIIRAM AEEHSNGRLL MVQEGGYHVT YAAYCLHAML EGVLKIPEPH LSDPVAYYPE 360
DEAVAVEAVK SIKRYHSEFV PFLRGT 386
Nucleotide Sequence
(Fasta)
ATGTTCAGCT CAGATCAGAC CTTCAAACCC CAAACCGACG CCGTAGATGT CTTCTGGCAC 60
GAAGGAATGC TCCAACACGA CGCTGTCGAA GGCGTCTTCG ACTCAGGACT CGACCCCGGA 120
TTCCTCGACG TACTTGAGAA GCACCCGGAG AACGCCGACA GAGTCAGGAA CATGGTTTCG 180
ATTCTCCAAC GTGGTCCCAT CGCTCCCCAT GTCAACTGGC TTCCCGGGCG TCTCGCAATC 240
GTCTCGGAGC TTCTAACGTT TCACACTTCA GACTACATAA ACAAGCTAAT AGAGGCAGAT 300
AAATCAGGAG AAAGGCGTGA AATCTCCGCA GGTACTTTCA TGAGCCCAGG GTCTTGGGAA 360
GCTGCGCTTC TTGCAGCCGG AACAACTCTA TCAGCAATGC AACACATTCT CGACAGCCAC 420
GGCAAAATAG CTTATGCTCT AGTACGCCCA CCAGGCCACC ACTCACAGCC CACTCAAGCT 480
GATGGGTATT GCTTCCTCAA CAACGCAGCT CTCGCCGTGA AGCTAGCATT GGATTCAGGA 540
CAATGCTCGC GAGTTGCGGT TGTGGACATC GATGTGCACT ACGGGAACGG CACGGCTGAA 600
GGGTTTTACA GGTCTGATAA GGTTCTCACG GTGTCGCTGC ATATGAACCA CGGCTCGTGG 660
GGGTCGTCTC ATCCGCAGAG AGGGTCTGTT GATGAGATTG GCGAAGGTGT GGGGTTGGGT 720
TATAACTTGA ATGTTCCTTT ACCTAATGGC ACTGGTGATA AGGGTTATGA GTATGCGGTG 780
AATGAGCTGG TGGTTCCTGC TGTTAGGAGG TTTGGACCTG ATATGGTTGT TCTTGTTGTT 840
GGTCAAGACT CCAGCGCTTT TGATCCAAAC GGGAGACAAA GCCTGACGAT GAATGGATAC 900
AGAAGGATTG GGCAGATAAT AAGGGCAATG GCAGAGGAGC ATAGCAATGG AAGGTTGCTT 960
ATGGTGCAAG AAGGAGGGTA TCATGTAACA TATGCAGCTT ACTGCCTCCA CGCCATGCTT 1020
GAAGGCGTGC TGAAGATTCC AGAACCGCAT CTATCGGATC CGGTTGCTTA TTACCCTGAA 1080
GATGAAGCTG TTGCTGTTGA AGCTGTTAAG TCAATCAAAA GATACCACTC TGAATTTGTT 1140
CCATTTCTCA GAGGGACTTG A 1162
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0156 Bra031628.1-P Brassica rapa 96 0.0 722
WERAM-Art-0007 AT1G08460.1 Arabidopsis thaliana 90 0.0 655
WERAM-Arl-0048 fgenesh2_kg.1__ 860__ AT1G08460.1 Arabidopsis lyrata 89 0.0 646
WERAM-Prp-0067 EMJ06546 Prunus persica 72 1e-157 553
WERAM-Met-0052 AES67133 Medicago truncatula 70 2e-151 532
WERAM-Mua-0091 GSMUA_Achr6P19520_001 Musa acuminata 71 6e-150 527
WERAM-Lep-0054 LPERR05G14310.1 Leersia perrieri 71 7e-148 520
WERAM-Pot-0100 POPTR_0009s02560.1 Populus trichocarpa 73 2e-147 519
WERAM-Glm-0150 GLYMA12G31380.1 Glycine max 69 1e-145 513
WERAM-Orgl-0054 OGLUM05G19120.1 Oryza glumaepatula 70 2e-144 509
WERAM-Ors-0049 OS05T0440250-01 Oryza sativa 71 2e-144 509
WERAM-Ori-0058 BGIOSGA017971-PA Oryza indica 71 2e-144 509
WERAM-Org-0053 ORGLA05G0156700.1 Oryza glaberrima 70 3e-144 508
WERAM-Orr-0055 ORUFI05G19220.1 Oryza rufipogon 70 4e-144 508
WERAM-Brd-0045 BRADI2G24020.1 Brachypodium distachyon 70 5e-144 508
WERAM-Sol-0084 Solyc06g074080.2.1 Solanum lycopersicum 70 5e-144 508
WERAM-Sob-0125 Sb09g021720.1 Sorghum bicolor 70 1e-143 506
WERAM-Tra-0017 Traes_1BL_B77909838.1 Triticum aestivum 70 4e-143 504
WERAM-Amt-0035 ERN16099 Amborella trichopoda 70 6e-143 504
WERAM-Sei-0083 Si022311m Setaria italica 72 9e-143 503
WERAM-Orni-0050 ONIVA05G18980.1 Oryza nivara 72 2e-141 499
WERAM-Viv-0042 VIT_06s0080g00210.t01 Vitis vinifera 71 5e-141 498
WERAM-Sot-0016 PGSC0003DMT400015085 Solanum tuberosum 69 1e-140 497
WERAM-Aet-0025 EMT04688 Aegilops tauschii 69 4e-140 495
WERAM-Thc-0113 EOY33305 Theobroma cacao 61 2e-139 492
WERAM-Orl-0065 KN539375.1_FGP010 Oryza longistaminata 70 3e-139 492
WERAM-Orbr-0062 OB05G25730.1 Oryza brachyantha 70 5e-138 488
WERAM-Tru-0024 TRIUR3_12332-P1 Triticum urartu 69 2e-134 476
WERAM-Orm-0052 OMERI05G15690.1 Oryza meridionalis 70 3e-132 469
WERAM-Php-0020 PP1S142_41V6.1 Physcomitrella patens 65 3e-127 452
WERAM-Orp-0051 OPUNC05G15950.1 Oryza punctata 64 6e-118 421
WERAM-Sem-0041 EFJ29828 Selaginella moellendorffii 59 4e-116 415
WERAM-Orb-0053 OBART05G18100.1 Oryza barthii 65 2e-112 402
WERAM-Zem-0043 GRMZM2G056539_P01 Zea mays 72 5e-103 371
WERAM-Hov-0039 MLOC_38610.1 Hordeum vulgare 72 1e-57 221
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 30 1e-35 148
WERAM-Ran-0201 ENSRNOP00000063689.2 Rattus norvegicus 31 5e-35 145
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 32 3e-34 143
WERAM-Osl-0036 ABP01312 Ostreococcus lucimarinus 32 4e-34 142
WERAM-Cag-0018 CAG60803 Candida glabrata 30 7e-34 142
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 33 7e-34 142
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 32 1e-33 141
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 32 2e-33 140
WERAM-Sac-0037 YNL021W Saccharomyces cerevisiae 30 2e-33 140
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 29 5e-33 139
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 32 8e-33 138
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 31 2e-32 137
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 31 2e-32 137
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 33 2e-32 137
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 33 2e-32 137
WERAM-Chr-0012 EDP07560 Chlamydomonas reinhardtii 34 3e-32 136
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 31 3e-32 136
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 31 9e-32 135
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 32 1e-31 134
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 36 1e-31 134
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 34 2e-31 134
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 33 2e-31 134
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 31 2e-31 133
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 32 3e-31 133
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 31 1e-30 131
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 33 1e-30 131
WERAM-Scp-0036 SPBC800.03.1:pep Schizosaccharomyces pombe 29 2e-30 130
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 33 2e-30 130
WERAM-Kop-0012 CAY68916 Komagataella pastoris 28 3e-30 130
WERAM-Cae-0060 F41H10.6b Caenorhabditis elegans 31 4e-30 129
WERAM-Asg-0010 AAS51704 Ashbya gossypii 29 5e-30 129
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 29 5e-30 129
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 29 8e-30 128
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 33 9e-30 128
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 32 9e-30 128
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 31 1e-29 128
WERAM-Caa-0034 KGT64501 Candida albicans 27 1e-29 128
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 30 1e-29 128
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 30 1e-29 128
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 32 1e-29 128
WERAM-Tut-0056 ENSTTRP00000004443.1 Tursiops truncatus 33 1e-29 128
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 28 1e-29 128
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 34 2e-29 127
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 34 2e-29 127
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 34 2e-29 127
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 34 2e-29 127
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 34 2e-29 127
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 32 2e-29 127
WERAM-Pug-0031 EFP89333 Puccinia graminis 27 3e-29 126
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 31 3e-29 126
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 33 4e-29 126
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 30 5e-29 125
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 30 6e-29 125
WERAM-Usm-0012 UM02102P0 Ustilago maydis 34 9e-29 125
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 28 1e-28 124
WERAM-Ere-0025 ENSEEUP00000001892.1 Erinaceus europaeus 35 1e-28 124
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 30 1e-28 124
WERAM-Tag-0054 ENSTGUP00000003859.1 Taeniopygia guttata 29 2e-28 124
WERAM-Fia-0129 ENSFALP00000010805.1 Ficedula albicollis 35 2e-28 124
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 34 2e-28 124
WERAM-Anc-0160 ENSACAP00000015012.3 Anolis carolinensis 31 2e-28 124
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 29 4e-28 123
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 36 5e-28 122
WERAM-Coi-0028 EAS30926 Coccidioides immitis 30 6e-28 122
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 32 6e-28 122
WERAM-Tas-0021 ENSTSYP00000002661.1 Tarsius syrichta 31 6e-28 122
WERAM-Phn-0010 SNOT_01279 Phaeosphaeria nodorum 34 8e-28 122
WERAM-Sah-0012 ENSSHAP00000001165.1 Sarcophilus harrisii 31 1e-27 121
WERAM-Leo-0130 ENSLOCP00000016135.1 Lepisosteus oculatus 29 2e-27 120
WERAM-Zyt-0016 Mycgr3P37223 Zymoseptoria tritici 31 4e-27 119
WERAM-Anp-0061 ENSAPLP00000006782.1 Anas platyrhynchos 28 4e-27 119
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 32 7e-27 119
Created Date 25-Jun-2016