| Tag |
Content |
| WERAM ID |
WERAM-Sot-0016 |
| Ensembl Protein ID |
PGSC0003DMT400015085 |
| Gene Name |
PGSC0003DMG400005895 |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
1.10e-35 |
125.2 |
47 |
333 |
|
| Organism |
Solanum tuberosum |
| Domain Profile |
HDAC Class-I
class-1.txt 19 khpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitG 107
khp r++ + +++ +s ++ + + a+ +el++fh++ey++ l + + + +el + + g ++ + l +G
PGSC0003DMT400015085 47 KHPENSDRVKNMLSILKRGPISPFISWHHGRPAHISELSSFHTQEYVNELIEADRNGGKELC---------GGTFLNPGSWDAALLAAG 126
67777777777777777777777778888889999999999999999999887777776665.........44456678899999**** PP
class-1.txt 108 asleaakkLnkkeadiainw.aGGlhhakkseasGfcyvnDivlailellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyg 194
++l+a+k++++++ +i+ hha+ ++a G+c++n+ la++ l ++v+ +did+h+G+g e fy++d+v+t+s+h +
PGSC0003DMT400015085 127 STLSAMKHIIDGHGKITYALvRPPGHHAQPTQADGYCFLNNAGLAVQLALDgGCRKVVVLDIDVHYGNGTAEGFYHSDKVLTISLHMNH 215
***************9877524567********************976555499********************************977 PP
class-1.txt 195 eef...fPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkf 280
++ P G +++ g+++g y +n+Pl +g D+ y +++++ + ie feP+++vl +G Ds a D+ g l+++g+ e+ +
PGSC0003DMT400015085 216 GSWgpsHPQGGTVEELGEGEGFGYNLNIPLPNGTGDKGYGYAMQHLVVPAIEKFEPDMMVLVVGQDSSAFDPNGRQCLTMEGYREIGRT 304
7763336779************************************************************************8776554 PP
class-1.txt 281 vk....sf.nlpllvlGGGGYtlrnvaRc 304
++ ++ n ll++ GGY ++ a c
PGSC0003DMT400015085 305 IRgmanKYsNGRLLIVQEGGYHVTYSAYC 333
432222677899*********99988877 PP
|
Protein Sequence
(Fasta) | MASSASQSLP SDNLIHVFWD EGMLKHDTGR GVFDTGIDPG FLDVLEKHPE NSDRVKNMLS 60
ILKRGPISPF ISWHHGRPAH ISELSSFHTQ EYVNELIEAD RNGGKELCGG TFLNPGSWDA 120
ALLAAGSTLS AMKHIIDGHG KITYALVRPP GHHAQPTQAD GYCFLNNAGL AVQLALDGGC 180
RKVVVLDIDV HYGNGTAEGF YHSDKVLTIS LHMNHGSWGP SHPQGGTVEE LGEGEGFGYN 240
LNIPLPNGTG DKGYGYAMQH LVVPAIEKFE PDMMVLVVGQ DSSAFDPNGR QCLTMEGYRE 300
IGRTIRGMAN KYSNGRLLIV QEGGYHVTYS AYCLHATLEG VLNVSDPLLS DPIAYYPEDQ 360
SFPTKVIEAI KDHFLKMIS 379Protein Fasta Sequence
>PGSC0003DMT400015085|Class-I|Solanum tuberosum
MASSASQSLPSDNLIHVFWDEGMLKHDTGRGVFDTGIDPGFLDVLEKHPENSDRVKNMLSILKRGPISPFISWHHGRPAHISELSSFHTQEYVNELIEADRNGGKELCGGTFLNPGSWDAALLAAGSTLSAMKHIIDGHGKITYALVRPPGHHAQPTQADGYCFLNNAGLAVQLALDGGCRKVVVLDIDVHYGNGTAEGFYHSDKVLTISLHMNHGSWGPSHPQGGTVEELGEGEGFGYNLNIPLPNGTGDKGYGYAMQHLVVPAIEKFEPDMMVLVVGQDSSAFDPNGRQCLTMEGYREIGRTIRGMANKYSNGRLLIVQEGGYHVTYSAYCLHATLEGVLNVSDPLLSDPIAYYPEDQSFPTKVIEAIKDHFLKMIS |
Nucleotide Sequence
(Fasta) | CGCCACCATA CCTATTTTCA ATTCACTTGA TATGCAGGGG AGGAAGAAGT ATTTGGAGTA 60
AAAAAGAGTG AGCAGCATCA AAACAAAGTG ACCACAATTC TCCCATGGCT TCTTCAGCAT 120
CACAGTCTCT ACCATCAGAC AACCTTATTC ATGTATTCTG GGACGAGGGT ATGCTGAAAC 180
ATGACACAGG AAGAGGTGTT TTCGACACAG GAATTGACCC TGGTTTCCTT GATGTTTTAG 240
AAAAACACCC AGAAAATTCA GACAGGGTAA AAAACATGTT GTCCATTCTC AAAAGGGGTC 300
CTATTTCACC TTTCATTTCT TGGCACCATG GCCGCCCTGC TCACATCTCT GAATTGTCAT 360
CTTTCCACAC CCAAGAATAT GTAAATGAAC TAATTGAAGC TGATAGAAAT GGCGGAAAAG 420
AATTATGTGG AGGGACATTC TTAAATCCTG GGTCATGGGA CGCTGCACTT CTTGCTGCTG 480
GTAGTACATT ATCAGCTATG AAGCATATAA TTGATGGACA TGGGAAAATC ACATATGCAT 540
TGGTCAGGCC ACCTGGTCAT CATGCGCAAC CTACTCAAGC TGATGGGTAT TGCTTCCTTA 600
ACAATGCGGG TCTAGCTGTA CAACTGGCTT TAGATGGTGG CTGTAGGAAG GTTGTTGTCC 660
TTGACATTGA TGTTCATTAC GGGAATGGAA CAGCAGAAGG ATTTTATCAT TCTGACAAGG 720
TTCTTACTAT CTCCCTTCAT ATGAATCATG GTTCTTGGGG CCCCTCTCAT CCACAGGGTG 780
GAACTGTAGA GGAGCTTGGT GAAGGTGAAG GTTTTGGGTA TAACCTGAAT ATACCGTTGC 840
CAAATGGAAC TGGGGACAAA GGGTATGGTT ATGCCATGCA GCATTTAGTT GTTCCTGCTA 900
TCGAGAAATT TGAGCCTGAT ATGATGGTTT TGGTTGTTGG GCAGGACTCA AGTGCTTTTG 960
ATCCAAATGG AAGACAATGC TTGACAATGG AAGGTTACAG AGAGATTGGG CGGACAATTC 1020
GTGGCATGGC AAACAAGTAT AGCAATGGAC GGCTCTTGAT AGTCCAAGAA GGTGGATACC 1080
ATGTTACATA TTCAGCCTAT TGTCTGCACG CGACTCTTGA AGGTGTGCTC AATGTTTCAG 1140
ACCCTCTATT ATCTGATCCT ATTGCTTATT ATCCTGAAGA TCAATCATTT CCAACCAAGG 1200
TAATCGAAGC TATCAAAGAC CATTTCTTAA AGATGATTAG TTGATATCTC ATTTCGTTTC 1260
CTGTTTGCTT ATGAGCTCAA ACACTTACAA CAATCTAATT CCATTAGTGG ACATTAAATG 1320
TAAAATATAT TTTTAAATAC CTTTAATAAT
1351Nucleotide Fasta Sequence
>PGSC0003DMT400015085|Class-I|Solanum tuberosum
CGCCACCATACCTATTTTCAATTCACTTGATATGCAGGGGAGGAAGAAGTATTTGGAGTAAAAAAGAGTGAGCAGCATCAAAACAAAGTGACCACAATTCTCCCATGGCTTCTTCAGCATCACAGTCTCTACCATCAGACAACCTTATTCATGTATTCTGGGACGAGGGTATGCTGAAACATGACACAGGAAGAGGTGTTTTCGACACAGGAATTGACCCTGGTTTCCTTGATGTTTTAGAAAAACACCCAGAAAATTCAGACAGGGTAAAAAACATGTTGTCCATTCTCAAAAGGGGTCCTATTTCACCTTTCATTTCTTGGCACCATGGCCGCCCTGCTCACATCTCTGAATTGTCATCTTTCCACACCCAAGAATATGTAAATGAACTAATTGAAGCTGATAGAAATGGCGGAAAAGAATTATGTGGAGGGACATTCTTAAATCCTGGGTCATGGGACGCTGCACTTCTTGCTGCTGGTAGTACATTATCAGCTATGAAGCATATAATTGATGGACATGGGAAAATCACATATGCATTGGTCAGGCCACCTGGTCATCATGCGCAACCTACTCAAGCTGATGGGTATTGCTTCCTTAACAATGCGGGTCTAGCTGTACAACTGGCTTTAGATGGTGGCTGTAGGAAGGTTGTTGTCCTTGACATTGATGTTCATTACGGGAATGGAACAGCAGAAGGATTTTATCATTCTGACAAGGTTCTTACTATCTCCCTTCATATGAATCATGGTTCTTGGGGCCCCTCTCATCCACAGGGTGGAACTGTAGAGGAGCTTGGTGAAGGTGAAGGTTTTGGGTATAACCTGAATATACCGTTGCCAAATGGAACTGGGGACAAAGGGTATGGTTATGCCATGCAGCATTTAGTTGTTCCTGCTATCGAGAAATTTGAGCCTGATATGATGGTTTTGGTTGTTGGGCAGGACTCAAGTGCTTTTGATCCAAATGGAAGACAATGCTTGACAATGGAAGGTTACAGAGAGATTGGGCGGACAATTCGTGGCATGGCAAACAAGTATAGCAATGGACGGCTCTTGATAGTCCAAGAAGGTGGATACCATGTTACATATTCAGCCTATTGTCTGCACGCGACTCTTGAAGGTGTGCTCAATGTTTCAGACCCTCTATTATCTGATCCTATTGCTTATTATCCTGAAGATCAATCATTTCCAACCAAGGTAATCGAAGCTATCAAAGACCATTTCTTAAAGATGATTAGTTGATATCTCATTTCGTTTCCTGTTTGCTTATGAGCTCAAACACTTACAACAATCTAATTCCATTAGTGGACATTAAATGTAAAATATATTTTTAAATACCTTTAATAAT
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
