| Tag |
Content |
| WERAM ID |
WERAM-Bro-0161 |
| Ensembl Protein ID |
Bo8g112460.1 |
| Gene Name |
HDA08 |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-II |
5.00e-91 |
306.8 |
16 |
344 |
| HDAC |
Class-I |
1.60e-37 |
131.2 |
46 |
335 |
|
| Organism |
Brassica oleracea |
| Domain Profile |
HDAC Class-II
class-2.txt 3 glvydekmlkhqaleenkek............hpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeeleslt 86
+++++e ml+h+a+e+ ++ hpE+++R+++++s lq+ +++++++l +r a +el+++H+++++++l +a+ + e++e+
Bo8g112460.1 16 DVFWHEGMLQHDAVEGVFDSgldpgfldvlekHPENADRVRNMVSILQRGPIAPHVNWLPGRLAIVSELLTFHTSDYINKLIEADkSGERREI---- 108
799***************99*************************************************************999744455544.... PP
class-2.txt 87 vdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklkvkkilivDwDvHhGnGtqeify 183
s +++++ s++aa la+G++l++++++l+ + k+++a+vRPPGHH+++++a+G+C++nn+a+a+kl++++ +++++ +vD+DvH+GnGt e fy
Bo8g112460.1 109 --SAGTFMSPGSWEAALLAAGTTLSAMQHILDSHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALDSGQCSRVAVVDIDVHYGNGTAEGFY 203
..4589******************************************************************************************* PP
class-2.txt 184 kdpkvlylSlHRydkgsffpesgs..gavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaGfDaaegdplgglsvta 278
+++kvl++SlH +++gs+ +s+ g+vde+geg g+g+n+Nv++++g+ gd+ y++a +e+v+p++++F Pd+v++ +G+D++++dp+g++s+t+
Bo8g112460.1 204 RSDKVLTVSLH-MNHGSW-GSSHPqrGSVDEIGEGVGLGYNLNVPLPNGT-GDKGYEYAVNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTM 297
***********.*****5.5444336*********************998.********************************************** PP
class-2.txt 279 kcyatltkqllkl....aggrvvlvlEGGynlkaiaeaveavvkaLl 321
++y+++ + ++ + ++gr+++v EGGy++++ a++ +a+++++l
Bo8g112460.1 298 NGYRRIGQIIRAMaeehSNGRLLMVQEGGYHVTYAAYCLHAMLEGVL 344
*********9999888889************************9987 PP
HDAC Class-I
class-1.txt 18 qkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGasleaak 114
+khp r++ + +++ + +++ + + a ++ell+fh+ +yi+ l + +++ ++ ++ + + g +e + l +G++l+a++
Bo8g112460.1 46 EKHPENADRVRNMVSILQRGPIAPHVNWLPGRLAIVSELLTFHTSDYINKLIEADKSGER--------REISAGTFMSPGSWEAALLAAGTTLSAMQ 134
67899999999999999999999999999999*****************99766554443........3456667788999**************** PP
class-1.txt 115 kLnkkeadiainw.aGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgveeafyttdrvmtvsfhkygeef...fPgtGdls 205
++ +++ +ia hh++ ++a G+c++n+ la+ l + +rv +did+h+G+g e fy +d+v+tvs+h + ++ P G+++
Bo8g112460.1 135 HILDSHGKIAYALvRPPGHHSQPTQADGYCFLNNAALAVKLALDsgQCSRVAVVDIDVHYGNGTAEGFYRSDKVLTVSLHMNHGSWgssHPQRGSVD 231
*********987624567********************97655547899*******************************8766553448******* PP
class-1.txt 206 dvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.....nlpllvlGGGGYt 297
++g++ g y +nvPl +g D+ ye +++++ + +++f P++vvl +G Ds a D+ g +l+++g+ ++ ++++ n ll++ GGY
Bo8g112460.1 232 EIGEGVGLGYNLNVPLPNGTGDKGYEYAVNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTMNGYRRIGQIIRAMaeehsNGRLLMVQEGGYH 328
********************************************************************8776555554322235789********** PP
class-1.txt 298 lrnvaRc 304
++ a c
Bo8g112460.1 329 VTYAAYC 335
9998877 PP
|
Protein Sequence
(Fasta) | MFSSDQTFKP QTDAVDVFWH EGMLQHDAVE GVFDSGLDPG FLDVLEKHPE NADRVRNMVS 60
ILQRGPIAPH VNWLPGRLAI VSELLTFHTS DYINKLIEAD KSGERREISA GTFMSPGSWE 120
AALLAAGTTL SAMQHILDSH GKIAYALVRP PGHHSQPTQA DGYCFLNNAA LAVKLALDSG 180
QCSRVAVVDI DVHYGNGTAE GFYRSDKVLT VSLHMNHGSW GSSHPQRGSV DEIGEGVGLG 240
YNLNVPLPNG TGDKGYEYAV NELVVPAVRR FGPDMVVLVV GQDSSAFDPN GRQSLTMNGY 300
RRIGQIIRAM AEEHSNGRLL MVQEGGYHVT YAAYCLHAML EGVLKIPEPH LSDPVAYYPE 360
DEAVAVEAVK SIKRYHSEFV PFLRGT 386Protein Fasta Sequence
>Bo8g112460.1|Class-I|Brassica oleracea
MFSSDQTFKPQTDAVDVFWHEGMLQHDAVEGVFDSGLDPGFLDVLEKHPENADRVRNMVSILQRGPIAPHVNWLPGRLAIVSELLTFHTSDYINKLIEADKSGERREISAGTFMSPGSWEAALLAAGTTLSAMQHILDSHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALDSGQCSRVAVVDIDVHYGNGTAEGFYRSDKVLTVSLHMNHGSWGSSHPQRGSVDEIGEGVGLGYNLNVPLPNGTGDKGYEYAVNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTMNGYRRIGQIIRAMAEEHSNGRLLMVQEGGYHVTYAAYCLHAMLEGVLKIPEPHLSDPVAYYPEDEAVAVEAVKSIKRYHSEFVPFLRGT |
Nucleotide Sequence
(Fasta) | ATGTTCAGCT CAGATCAGAC CTTCAAACCC CAAACCGACG CCGTAGATGT CTTCTGGCAC 60
GAAGGAATGC TCCAACACGA CGCTGTCGAA GGCGTCTTCG ACTCAGGACT CGACCCCGGA 120
TTCCTCGACG TACTTGAGAA GCACCCGGAG AACGCCGACA GAGTCAGGAA CATGGTTTCG 180
ATTCTCCAAC GTGGTCCCAT CGCTCCCCAT GTCAACTGGC TTCCCGGGCG TCTCGCAATC 240
GTCTCGGAGC TTCTAACGTT TCACACTTCA GACTACATAA ACAAGCTAAT AGAGGCAGAT 300
AAATCAGGAG AAAGGCGTGA AATCTCCGCA GGTACTTTCA TGAGCCCAGG GTCTTGGGAA 360
GCTGCGCTTC TTGCAGCCGG AACAACTCTA TCAGCAATGC AACACATTCT CGACAGCCAC 420
GGCAAAATAG CTTATGCTCT AGTACGCCCA CCAGGCCACC ACTCACAGCC CACTCAAGCT 480
GATGGGTATT GCTTCCTCAA CAACGCAGCT CTCGCCGTGA AGCTAGCATT GGATTCAGGA 540
CAATGCTCGC GAGTTGCGGT TGTGGACATC GATGTGCACT ACGGGAACGG CACGGCTGAA 600
GGGTTTTACA GGTCTGATAA GGTTCTCACG GTGTCGCTGC ATATGAACCA CGGCTCGTGG 660
GGGTCGTCTC ATCCGCAGAG AGGGTCTGTT GATGAGATTG GCGAAGGTGT GGGGTTGGGT 720
TATAACTTGA ATGTTCCTTT ACCTAATGGC ACTGGTGATA AGGGTTATGA GTATGCGGTG 780
AATGAGCTGG TGGTTCCTGC TGTTAGGAGG TTTGGACCTG ATATGGTTGT TCTTGTTGTT 840
GGTCAAGACT CCAGCGCTTT TGATCCAAAC GGGAGACAAA GCCTGACGAT GAATGGATAC 900
AGAAGGATTG GGCAGATAAT AAGGGCAATG GCAGAGGAGC ATAGCAATGG AAGGTTGCTT 960
ATGGTGCAAG AAGGAGGGTA TCATGTAACA TATGCAGCTT ACTGCCTCCA CGCCATGCTT 1020
GAAGGCGTGC TGAAGATTCC AGAACCGCAT CTATCGGATC CGGTTGCTTA TTACCCTGAA 1080
GATGAAGCTG TTGCTGTTGA AGCTGTTAAG TCAATCAAAA GATACCACTC TGAATTTGTT 1140
CCATTTCTCA GAGGGACTTG A
1162Nucleotide Fasta Sequence
>Bo8g112460.1|Class-I|Brassica oleracea
ATGTTCAGCTCAGATCAGACCTTCAAACCCCAAACCGACGCCGTAGATGTCTTCTGGCACGAAGGAATGCTCCAACACGACGCTGTCGAAGGCGTCTTCGACTCAGGACTCGACCCCGGATTCCTCGACGTACTTGAGAAGCACCCGGAGAACGCCGACAGAGTCAGGAACATGGTTTCGATTCTCCAACGTGGTCCCATCGCTCCCCATGTCAACTGGCTTCCCGGGCGTCTCGCAATCGTCTCGGAGCTTCTAACGTTTCACACTTCAGACTACATAAACAAGCTAATAGAGGCAGATAAATCAGGAGAAAGGCGTGAAATCTCCGCAGGTACTTTCATGAGCCCAGGGTCTTGGGAAGCTGCGCTTCTTGCAGCCGGAACAACTCTATCAGCAATGCAACACATTCTCGACAGCCACGGCAAAATAGCTTATGCTCTAGTACGCCCACCAGGCCACCACTCACAGCCCACTCAAGCTGATGGGTATTGCTTCCTCAACAACGCAGCTCTCGCCGTGAAGCTAGCATTGGATTCAGGACAATGCTCGCGAGTTGCGGTTGTGGACATCGATGTGCACTACGGGAACGGCACGGCTGAAGGGTTTTACAGGTCTGATAAGGTTCTCACGGTGTCGCTGCATATGAACCACGGCTCGTGGGGGTCGTCTCATCCGCAGAGAGGGTCTGTTGATGAGATTGGCGAAGGTGTGGGGTTGGGTTATAACTTGAATGTTCCTTTACCTAATGGCACTGGTGATAAGGGTTATGAGTATGCGGTGAATGAGCTGGTGGTTCCTGCTGTTAGGAGGTTTGGACCTGATATGGTTGTTCTTGTTGTTGGTCAAGACTCCAGCGCTTTTGATCCAAACGGGAGACAAAGCCTGACGATGAATGGATACAGAAGGATTGGGCAGATAATAAGGGCAATGGCAGAGGAGCATAGCAATGGAAGGTTGCTTATGGTGCAAGAAGGAGGGTATCATGTAACATATGCAGCTTACTGCCTCCACGCCATGCTTGAAGGCGTGCTGAAGATTCCAGAACCGCATCTATCGGATCCGGTTGCTTATTACCCTGAAGATGAAGCTGTTGCTGTTGAAGCTGTTAAGTCAATCAAAAGATACCACTCTGAATTTGTTCCATTTCTCAGAGGGACTTGA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
