WERAM Information


Tag Content
WERAM ID WERAM-Brr-0156
Ensembl Protein ID Bra031628.1-P
Gene Name HDA08
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra031628 Bra031628.1 Bra031628.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-I 8.70e-37 128.3 46 335
Organism Brassica rapa
Domain Profile
  HDAC Class-I

    class-1.txt  18 qkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitGasleaa 113
+khp r++ + +++ +s +++ + + a ++ell+fh+ +yi+ l + +++ ++ ++ + + g +e + l +G++l+a+
Bra031628.1-P 46 EKHPENADRVRNMVSILQRGPISPRVNWLPGRLAIVSELLTFHTSDYINKLIEADKSGER--------REISAGTFMSPGSWEAALLAAGTTLSAM 133
6899999999999999999999999999999******************99766554443........3456667788999*************** PP
class-1.txt 114 kkLnkkeadiainw.aGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgveeafyttdrvmtvsfhkygeef...fPgtGd 203
+++ +++ +ia hh++ ++a G+c++n+ la+ l +rv +did+h+G+g e fy +d+v+tvs+h + ++ P G+
Bra031628.1-P 134 QHILDSHGKIAYALvRPPGHHSQPTQADGYCFLNNAALAVKLALDsgRCSRVAVVDIDVHYGNGTAEGFYRSDKVLTVSLHMNHGSWgssHPQRGS 229
**********987624567********************9765554789********************************8766553448***** PP
class-1.txt 204 lsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksf.....nlpllvlGGG 294
+++ g++ g y +nvPl +g D+ ye +++++ + +++f P++vvl +G Ds a D+ g l+++g+ ++ ++++ n ll++ G
Bra031628.1-P 230 VDELGEGVGLGYNLNVPLPNGTGDKGYEYAVNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQCLTMNGYRRIGQIMRAMadehsNGRLLMVQEG 325
**********************************************************************9998888886543335778******* PP
class-1.txt 295 GYtlrnvaRc 304
GY ++ a c
Bra031628.1-P 326 GYHVTYAAYC 335
***9998877 PP

Protein Sequence
(Fasta)
MLSSDQTSKP QSDAVDVFWH EGMLQHDAVQ GVFDTGINPG FLDVLEKHPE NADRVRNMVS 60
ILQRGPISPR VNWLPGRLAI VSELLTFHTS DYINKLIEAD KSGERREISA GTFMSPGSWE 120
AALLAAGTTL SAMQHILDSH GKIAYALVRP PGHHSQPTQA DGYCFLNNAA LAVKLALDSG 180
RCSRVAVVDI DVHYGNGTAE GFYRSDKVLT VSLHMNHGSW GSSHPQRGSV DELGEGVGLG 240
YNLNVPLPNG TGDKGYEYAV NELVVPAVRR FGPDMVVLVV GQDSSAFDPN GRQCLTMNGY 300
RRIGQIMRAM ADEHSNGRLL MVQEGGYHVT YAAYCLHAML EGVLKIPEPH LEDPVAYYPE 360
DEAVAVEAVK SIKRYHSEYV PFLRGT 386
Nucleotide Sequence
(Fasta)
ATGCTCAGCT CAGATCAGAC CTCCAAACCC CAAAGCGACG CCGTAGATGT CTTCTGGCAC 60
GAAGGAATGC TCCAACACGA CGCCGTCCAA GGCGTCTTCG ACACGGGAAT CAACCCCGGA 120
TTCCTCGACG TATTGGAGAA GCACCCGGAG AACGCCGACA GAGTCAGGAA CATGGTTTCG 180
ATTCTCCAAC GTGGTCCCAT CTCTCCCCGT GTCAATTGGC TTCCCGGTCG TCTCGCAATC 240
GTCTCGGAGC TTCTAACGTT TCACACTTCA GACTACATAA ACAAGCTAAT AGAGGCAGAT 300
AAATCAGGAG AAAGGCGTGA GATTTCCGCA GGTACTTTCA TGAGTCCAGG GTCTTGGGAA 360
GCTGCGCTTC TTGCAGCCGG AACAACTCTA TCAGCAATGC AACACATTCT CGACAGCCAC 420
GGCAAAATAG CTTATGCTCT GGTTCGCCCA CCAGGCCACC ACTCTCAGCC CACTCAAGCT 480
GATGGGTATT GCTTCCTCAA CAACGCAGCT CTCGCCGTGA AGCTAGCGTT GGATTCAGGA 540
CGCTGCTCGC GAGTTGCGGT TGTTGACATC GATGTGCACT ACGGGAACGG CACAGCTGAA 600
GGGTTTTACA GGTCTGATAA GGTGCTCACG GTGTCGCTGC ATATGAACCA CGGGTCGTGG 660
GGGTCGTCTC ATCCGCAGAG AGGGTCTGTT GATGAGCTTG GTGAAGGTGT GGGGTTGGGT 720
TATAACTTGA ATGTTCCTTT ACCTAATGGC ACTGGTGACA AGGGTTATGA ATATGCGGTG 780
AATGAGCTGG TCGTTCCTGC TGTTAGGAGG TTTGGACCTG ATATGGTTGT TCTTGTTGTT 840
GGTCAAGACT CTAGCGCTTT TGATCCAAAC GGGAGACAAT GCCTGACGAT GAACGGATAC 900
AGAAGGATTG GGCAGATAAT GAGGGCAATG GCAGATGAGC ATAGCAATGG AAGGTTGCTT 960
ATGGTGCAAG AAGGAGGGTA TCATGTTACA TATGCAGCTT ACTGCCTCCA CGCCATGCTT 1020
GAAGGCGTGC TGAAGATTCC AGAACCGCAT CTTGAGGATC CGGTCGCTTA TTACCCTGAA 1080
GATGAAGCTG TTGCTGTTGA AGCTGTTAAA TCAATCAAAA GATACCACTC CGAATATGTT 1140
CCATTTCTCA GAGGAACTTG A 1162
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bro-0161 Bo8g112460.1 Brassica oleracea 96 0.0 722
WERAM-Art-0007 AT1G08460.1 Arabidopsis thaliana 88 0.0 645
WERAM-Arl-0048 fgenesh2_kg.1__ 860__ AT1G08460.1 Arabidopsis lyrata 87 0.0 634
WERAM-Prp-0067 EMJ06546 Prunus persica 72 2e-158 556
WERAM-Met-0052 AES67133 Medicago truncatula 72 5e-153 538
WERAM-Mua-0091 GSMUA_Achr6P19520_001 Musa acuminata 70 3e-150 528
WERAM-Lep-0054 LPERR05G14310.1 Leersia perrieri 72 2e-149 526
WERAM-Pot-0100 POPTR_0009s02560.1 Populus trichocarpa 73 2e-147 519
WERAM-Glm-0150 GLYMA12G31380.1 Glycine max 70 3e-146 515
WERAM-Orgl-0054 OGLUM05G19120.1 Oryza glumaepatula 70 7e-146 514
WERAM-Ors-0049 OS05T0440250-01 Oryza sativa 71 9e-146 513
WERAM-Ori-0058 BGIOSGA017971-PA Oryza indica 71 9e-146 513
WERAM-Org-0053 ORGLA05G0156700.1 Oryza glaberrima 71 2e-145 513
WERAM-Orr-0055 ORUFI05G19220.1 Oryza rufipogon 70 2e-145 513
WERAM-Brd-0045 BRADI2G24020.1 Brachypodium distachyon 70 3e-145 512
WERAM-Sob-0125 Sb09g021720.1 Sorghum bicolor 70 1e-144 509
WERAM-Sol-0084 Solyc06g074080.2.1 Solanum lycopersicum 70 3e-144 508
WERAM-Sei-0083 Si022311m Setaria italica 70 3e-144 508
WERAM-Tra-0017 Traes_1BL_B77909838.1 Triticum aestivum 70 3e-144 508
WERAM-Amt-0035 ERN16099 Amborella trichopoda 68 3e-144 508
WERAM-Orni-0050 ONIVA05G18980.1 Oryza nivara 71 6e-143 504
WERAM-Sot-0016 PGSC0003DMT400015085 Solanum tuberosum 71 2e-142 503
WERAM-Aet-0025 EMT04688 Aegilops tauschii 69 3e-141 499
WERAM-Viv-0042 VIT_06s0080g00210.t01 Vitis vinifera 71 5e-141 498
WERAM-Orl-0065 KN539375.1_FGP010 Oryza longistaminata 70 2e-140 496
WERAM-Orbr-0062 OB05G25730.1 Oryza brachyantha 70 2e-139 493
WERAM-Tru-0024 TRIUR3_12332-P1 Triticum urartu 69 2e-135 479
WERAM-Orm-0052 OMERI05G15690.1 Oryza meridionalis 70 2e-134 476
WERAM-Php-0020 PP1S142_41V6.1 Physcomitrella patens 66 7e-128 454
WERAM-Orp-0051 OPUNC05G15950.1 Oryza punctata 64 7e-120 427
WERAM-Thc-0113 EOY33305 Theobroma cacao 57 1e-119 427
WERAM-Sem-0041 EFJ29828 Selaginella moellendorffii 59 1e-117 420
WERAM-Orb-0053 OBART05G18100.1 Oryza barthii 66 1e-114 410
WERAM-Zem-0043 GRMZM2G056539_P01 Zea mays 71 4e-102 368
WERAM-Hov-0039 MLOC_38610.1 Hordeum vulgare 71 4e-57 219
WERAM-Ran-0209 ENSRNOP00000009295.5 Rattus norvegicus 31 1e-35 147
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 31 2e-35 147
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 31 8e-35 145
WERAM-Osl-0036 ABP01312 Ostreococcus lucimarinus 32 2e-34 143
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 33 7e-34 142
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 33 1e-33 141
WERAM-Cag-0018 CAG60803 Candida glabrata 30 1e-33 141
WERAM-Sac-0037 YNL021W Saccharomyces cerevisiae 29 2e-33 140
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 31 7e-33 139
WERAM-Chr-0012 EDP07560 Chlamydomonas reinhardtii 32 1e-32 138
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 31 1e-32 137
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 31 1e-32 137
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 32 2e-32 137
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 31 2e-32 137
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 32 3e-32 136
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 33 3e-32 136
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 33 5e-32 135
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 35 6e-32 135
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 29 7e-32 135
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 33 7e-32 135
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 32 9e-32 135
WERAM-Scp-0036 SPBC800.03.1:pep Schizosaccharomyces pombe 30 1e-31 134
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 34 1e-31 134
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 32 3e-31 133
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 31 3e-31 133
WERAM-Cae-0060 F41H10.6b Caenorhabditis elegans 31 4e-31 132
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 33 4e-31 132
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 33 5e-31 132
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 31 7e-31 132
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 32 9e-31 131
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 30 1e-30 131
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 32 2e-30 130
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 29 3e-30 130
WERAM-Caa-0034 KGT64501 Candida albicans 28 3e-30 129
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 31 4e-30 129
WERAM-Tut-0056 ENSTTRP00000004443.1 Tursiops truncatus 33 4e-30 129
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 33 4e-30 129
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 33 4e-30 129
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 30 5e-30 129
WERAM-Asg-0010 AAS51704 Ashbya gossypii 28 5e-30 129
WERAM-Tag-0054 ENSTGUP00000003859.1 Taeniopygia guttata 29 6e-30 129
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 32 6e-30 129
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 34 7e-30 129
WERAM-Kop-0012 CAY68916 Komagataella pastoris 28 7e-30 128
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 34 8e-30 128
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 34 9e-30 128
WERAM-Anc-0012 ENSACAP00000019114.1 Anolis carolinensis 32 1e-29 128
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 30 1e-29 128
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 31 1e-29 127
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 33 2e-29 127
WERAM-Fia-0129 ENSFALP00000010805.1 Ficedula albicollis 35 2e-29 127
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 33 3e-29 127
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 30 3e-29 126
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 33 4e-29 126
WERAM-Sah-0012 ENSSHAP00000001165.1 Sarcophilus harrisii 32 5e-29 125
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 28 6e-29 125
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 29 6e-29 125
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 30 8e-29 125
WERAM-Tas-0021 ENSTSYP00000002661.1 Tarsius syrichta 32 8e-29 125
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 28 1e-28 124
WERAM-Usm-0012 UM02102P0 Ustilago maydis 34 1e-28 124
WERAM-Phn-0010 SNOT_01279 Phaeosphaeria nodorum 34 2e-28 124
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 33 2e-28 124
WERAM-Coi-0028 EAS30926 Coccidioides immitis 30 2e-28 124
WERAM-Pug-0031 EFP89333 Puccinia graminis 27 2e-28 123
WERAM-Leo-0130 ENSLOCP00000016135.1 Lepisosteus oculatus 29 3e-28 123
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 34 4e-28 122
WERAM-Nol-0078 ENSNLEP00000009627.2 Nomascus leucogenys 29 4e-28 122
WERAM-Pat-0185 ENSPTRP00000037550.5 Pan troglodytes 29 5e-28 122
WERAM-Poa-0196 ENSPPYP00000022747.2 Pongo abelii 29 6e-28 122
WERAM-Anp-0061 ENSAPLP00000006782.1 Anas platyrhynchos 29 8e-28 122
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 36 9e-28 121
WERAM-Pes-0124 ENSPSIP00000014863.1 Pelodiscus sinensis 29 9e-28 121
WERAM-Trv-0041 EHK18675 Trichoderma virens 28 2e-27 120
WERAM-Gaga-0067 ENSGALP00000010190.4 Gallus gallus 28 3e-27 120
WERAM-Ere-0025 ENSEEUP00000001892.1 Erinaceus europaeus 35 3e-27 120
Created Date 25-Jun-2016