Tag |
Content |
WERAM ID |
WERAM-Sus-0129 |
Ensembl Protein ID |
ENSSSCP00000018401.2 |
Gene Name |
HDAC5 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
1.10e-148 |
495.1 |
223 |
563 |
HDAC |
Class-I |
2.00e-30 |
106.8 |
242 |
533 |
|
Organism |
Sus scrofa |
Domain Profile |
HDAC Class-II
class-2.txt 2 aglvydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletaeklekeeles...... 84 +g+vyd+ mlkhq++++n++ hpE+++Riq+i+srlqe+gll+k+e++++rkat++e+q+vHse h+ l++t+ +l++++l+s ENSSSCP00000018401.2 223 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTS-PLNRQKLDSkkllgp 310 79**********************************************************************9.*************** PP class-2.txt 85 .............ltvdsdsiylesksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqkl 160 ++vdsd++++e++s++a+r+avG+++el++kv++gelkngfa++RPPGHHaeestamGFC+fn+va+++kllqqkl ENSSSCP00000018401.2 311 isqkmyavlpcggIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITTKLLQQKL 399 ***************************************************************************************** PP class-2.txt 161 kvkkilivDwDvHhGnGtqeifykdpkvlylSlHRydkgsffpesgsgavdevgegkgegfnvNvawnggl...mgdaeylaafrevvl 246 +v k+livDwD+HhGnGtq++fy+dp+vly+SlHRyd+g+ffp gsga++evg g+g+g+nvNvaw+gg+ +gd eyl+afr+vv+ ENSSSCP00000018401.2 400 NVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFP--GSGAPEEVGGGPGVGYNVNVAWTGGVdppIGDVEYLTAFRTVVM 486 *******************************************..******************************************** PP class-2.txt 247 piakeFkPdlvlvsaGfDaaeg..dplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLl 321 pia+eF+Pd+vlvsaGfDa+eg +plgg+svta+c+++lt+ql++laggrvvl+lEGG++l+ai++a+ea+v+aLl ENSSSCP00000018401.2 487 PIAHEFSPDVVLVSAGFDAVEGhlSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 563 **********************99***************************************************98 PP
HDAC Class-I
class-1.txt 18 qkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenae.............elskelkkfnvgedc. 92 + hp r++ + + + + gl k e+++ +ka+ +e++++hse y ++l +p n + ++ l ++g d+ ENSSSCP00000018401.2 242 HVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSE-YHTLLYGTSPLNRQkldskkllgpisqKMYAVLPCGGIGVDSd 329 456777778888888888999999999999999999999998875.5566666665555534444344433222222222224555652 PP class-1.txt 93 Pvfdglfeyc..qlitGasleaakkLnkkead..iainwaGGlhhakkseasGfcyvnDivlailellkkhk..rvlyididlhhGDgv 175 v +++++ + ++ G +e a k+ +e + ai G hha s a Gfc+ n + ++ l++k++ +vl +d d+hhG+g ENSSSCP00000018401.2 330 TVWNEMHSSSavRMAVGCLVELAFKVAAGELKngFAIIRPPG-HHAEESTAMGFCFFNSVAITTKLLQQKLNvgKVLIVDWDIHHGNGT 417 467777765511456788899999998877652256665555.9******************9988888654449************** PP class-1.txt 176 eeafyttdrvmtvsfhkyge.effPgtGdlsdvgaekgkyyavnvPlkdgid....DesyekifksviskvieafePeavvlqcGaDsl 259 ++afy+ v+ +s+h+y++ +ffPg+G ++vg + g y vnv + g+d D +y + f++v+ ++ + f+P++v++ G D++ ENSSSCP00000018401.2 418 QQAFYNDPSVLYISLHRYDNgNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVDppigDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAV 506 ******************8746************************99997666669******************************** PP class-1.txt 260 ag..Drlgefnlsikghaecvkfvksf 284 g +lg ++++ + +++ + + + ENSSSCP00000018401.2 507 EGhlSPLGGYSVTARCFGHLTRQLMTL 533 8733589*****999999876655544 PP
|
Protein Sequence (Fasta) | VPLHGQSPLV TGERVATSMR TVGKLPRHRP LSRTQSSPLP QSPQALQQLV MQQQHQQFLE 60 KQKQQQLQLG KILTKTGELP RQPTTHPEET EEELTEQQEA LLGEGALTIP REGSTESEST 120 QEDLEEEEEE EEEEEEEEED CIQVKDEAGE SGAEEGPDLE ESSAGYKKVF ADAQQLQPLQ 180 VYQAPLSLAT VPHQALGRTQ SSPAAPGGMK SPPDQPTKHL FTTGVVYDTF MLKHQCMCGN 240 THVHPEHAGR IQSIWSRLQE TGLLSKCERI RGRKATLDEI QTVHSEYHTL LYGTSPLNRQ 300 KLDSKKLLGP ISQKMYAVLP CGGIGVDSDT VWNEMHSSSA VRMAVGCLVE LAFKVAAGEL 360 KNGFAIIRPP GHHAEESTAM GFCFFNSVAI TTKLLQQKLN VGKVLIVDWD IHHGNGTQQA 420 FYNDPSVLYI SLHRYDNGNF FPGSGAPEEV GGGPGVGYNV NVAWTGGVDP PIGDVEYLTA 480 FRTVVMPIAH EFSPDVVLVS AGFDAVEGHL SPLGGYSVTA RCFGHLTRQL MTLAGGRVVL 540 ALEGGHDLTA ICDASEACVS ALLSVELQPL DEAVLQQKPN INAVATLEKV IGIQSKHWSC 600 VQRFAAGLGR SLREAQAGET EEAETVSAMA LLSVGAEQAQ AAAAREHSPR PAEEPMEQEP 660 AL 662Protein Fasta Sequence
>ENSSSCP00000018401.2|Class-I|Sus scrofa VPLHGQSPLVTGERVATSMRTVGKLPRHRPLSRTQSSPLPQSPQALQQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQEALLGEGALTIPREGSTESESTQEDLEEEEEEEEEEEEEEEDCIQVKDEAGESGAEEGPDLEESSAGYKKVFADAQQLQPLQVYQAPLSLATVPHQALGRTQSSPAAPGGMKSPPDQPTKHLFTTGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITTKLLQQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVATLEKVIGIQSKHWSCVQRFAAGLGRSLREAQAGETEEAETVSAMALLSVGAEQAQAAAAREHSPRPAEEPMEQEPAL
|
Nucleotide Sequence (Fasta) | AGCACAGCTT TGGACAGTCA GTCTATGAGT AGCTGGTGGT ATGCAAAGAG GTCCTGCTTA 60 AAAGACACGT GATCCTTCCC AGCCAGGCAG AGCCAAGTCC ATGGTCAGGG AGGTGTCTTG 120 CAGTTGGAGA GAGCACTAGT CCTTGTTCAC TCTCACAGAG GGCCTGAGAC TATCTGTGCA 180 GTAGTAACTG AATCAAAAGG AGAGAATGGT GAATCCAGGA AGGCTGGCTG GAGGCAGTGG 240 CTCTGAGCTG TAAGACTGTT TGATTGTGGG GAGGAAGAGG GAGATCCAGG TTTGGGGGCA 300 GCATTCCCCA GGCCCCTCCT AGTTTTCTCC TGAGTATGTA GGTGGATGCG TTCTAGGTGA 360 GGGAGCATCT GGGGGTGGGA GGGGGGAGCC TGATGCCCTG ACAGTGAGGG TTACTCCCCC 420 CCCCACAGTG CCACTCCACG GGCAGTCCCC GCTGGTGACG GGTGAACGCG TGGCCACCAG 480 CATGCGGACG GTGGGCAAGC TCCCAAGGCA CCGGCCCCTG AGCCGCACTC AGTCCTCGCC 540 GCTGCCCCAG AGCCCCCAGG CCCTGCAGCA GCTGGTCATG CAGCAGCAGC ACCAGCAGTT 600 CCTGGAGAAG CAGAAGCAGC AACAGCTGCA GCTGGGCAAG ATCCTCACCA AGACTGGGGA 660 GCTGCCCCGG CAGCCCACCA CCCACCCGGA GGAGACAGAG GAGGAGCTGA CGGAGCAGCA 720 GGAGGCCTTG CTGGGGGAGG GAGCCCTGAC CATCCCCCGA GAAGGCTCCA CGGAGAGCGA 780 GAGCACGCAG GAAGACCTGG AGGAGGAGGA AGAGGAGGAG GAGGAAGAGG AGGAGGAGGA 840 GGAGGATTGT ATCCAGGTCA AGGATGAGGC GGGCGAGAGT GGTGCTGAGG AGGGCCCCGA 900 CTTGGAGGAG TCCAGTGCTG GTTACAAAAA GGTGTTTGCA GATGCCCAGC AGCTGCAGCC 960 GCTGCAGGTG TACCAGGCAC CCCTCAGCCT GGCCACTGTG CCCCACCAGG CCCTGGGCCG 1020 CACCCAGTCC TCACCTGCTG CCCCAGGGGG CATGAAGAGC CCCCCAGACC AGCCCACCAA 1080 GCACCTCTTC ACCACAGGTG TGGTCTACGA CACGTTCATG CTGAAGCACC AGTGCATGTG 1140 CGGGAACACA CACGTGCACC CGGAGCACGC TGGCCGGATT CAGAGCATCT GGTCCCGGCT 1200 GCAGGAAACA GGCCTGCTCA GCAAGTGTGA GCGGATTCGG GGTCGCAAAG CCACGCTGGA 1260 CGAGATCCAG ACGGTGCACT CCGAGTACCA CACCCTGCTC TATGGGACCA GCCCCCTCAA 1320 CCGCCAGAAG CTGGACAGCA AGAAGCTGCT GGGCCCCATC AGCCAGAAGA TGTATGCTGT 1380 GCTGCCCTGC GGGGGCATCG GGGTGGACAG CGACACAGTG TGGAATGAGA TGCACTCCTC 1440 CAGTGCTGTG CGCATGGCGG TGGGCTGCCT GGTGGAGCTG GCATTCAAGG TGGCTGCGGG 1500 GGAGCTCAAG AATGGATTTG CCATCATCCG GCCCCCAGGC CACCACGCGG AGGAATCCAC 1560 AGCCATGGGA TTCTGCTTCT TCAACTCTGT AGCCATCACA ACCAAACTTC TGCAGCAGAA 1620 GCTGAACGTG GGCAAGGTTC TCATCGTGGA CTGGGACATA CACCACGGCA ATGGCACCCA 1680 GCAAGCATTC TACAACGACC CCTCCGTGCT CTATATCTCT CTGCATCGCT ATGACAATGG 1740 GAACTTCTTT CCAGGCTCTG GGGCTCCTGA AGAGGTTGGC GGAGGGCCGG GTGTGGGGTA 1800 CAATGTGAAC GTGGCATGGA CGGGAGGTGT GGACCCCCCC ATCGGAGACG TGGAGTACCT 1860 AACGGCCTTC AGGACAGTGG TGATGCCCAT CGCCCACGAG TTCTCACCTG ACGTGGTCCT 1920 GGTTTCCGCC GGGTTTGATG CTGTTGAGGG ACACTTGTCT CCGTTGGGTG GCTACTCTGT 1980 CACCGCCAGA TGTTTTGGCC ACTTGACCAG GCAGCTGATG ACGCTGGCAG GGGGCCGGGT 2040 GGTGCTGGCC CTGGAGGGAG GCCATGACTT GACCGCCATC TGTGATGCCT CTGAGGCCTG 2100 TGTCTCAGCT CTGCTCAGCG TGGAGCTGCA GCCCTTGGAC GAGGCAGTCC TGCAACAAAA 2160 GCCCAACATC AATGCAGTGG CCACGCTAGA GAAAGTCATC GGGATCCAGA GCAAACACTG 2220 GAGCTGTGTG CAGAGGTTCG CTGCTGGTCT AGGCCGTTCC CTGCGGGAGG CCCAGGCAGG 2280 CGAGACAGAG GAGGCCGAGA CTGTGAGCGC CATGGCCTTG CTGTCGGTGG GGGCCGAGCA 2340 GGCGCAGGCT GCTGCAGCCC GGGAGCACAG CCCCAGGCCG GCAGAGGAGC CCATGGAGCA 2400 GGAGCCTGCC CTGTGA
2417Nucleotide Fasta Sequence
>ENSSSCP00000018401.2|Class-I|Sus scrofa AGCACAGCTTTGGACAGTCAGTCTATGAGTAGCTGGTGGTATGCAAAGAGGTCCTGCTTAAAAGACACGTGATCCTTCCCAGCCAGGCAGAGCCAAGTCCATGGTCAGGGAGGTGTCTTGCAGTTGGAGAGAGCACTAGTCCTTGTTCACTCTCACAGAGGGCCTGAGACTATCTGTGCAGTAGTAACTGAATCAAAAGGAGAGAATGGTGAATCCAGGAAGGCTGGCTGGAGGCAGTGGCTCTGAGCTGTAAGACTGTTTGATTGTGGGGAGGAAGAGGGAGATCCAGGTTTGGGGGCAGCATTCCCCAGGCCCCTCCTAGTTTTCTCCTGAGTATGTAGGTGGATGCGTTCTAGGTGAGGGAGCATCTGGGGGTGGGAGGGGGGAGCCTGATGCCCTGACAGTGAGGGTTACTCCCCCCCCCACAGTGCCACTCCACGGGCAGTCCCCGCTGGTGACGGGTGAACGCGTGGCCACCAGCATGCGGACGGTGGGCAAGCTCCCAAGGCACCGGCCCCTGAGCCGCACTCAGTCCTCGCCGCTGCCCCAGAGCCCCCAGGCCCTGCAGCAGCTGGTCATGCAGCAGCAGCACCAGCAGTTCCTGGAGAAGCAGAAGCAGCAACAGCTGCAGCTGGGCAAGATCCTCACCAAGACTGGGGAGCTGCCCCGGCAGCCCACCACCCACCCGGAGGAGACAGAGGAGGAGCTGACGGAGCAGCAGGAGGCCTTGCTGGGGGAGGGAGCCCTGACCATCCCCCGAGAAGGCTCCACGGAGAGCGAGAGCACGCAGGAAGACCTGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGATTGTATCCAGGTCAAGGATGAGGCGGGCGAGAGTGGTGCTGAGGAGGGCCCCGACTTGGAGGAGTCCAGTGCTGGTTACAAAAAGGTGTTTGCAGATGCCCAGCAGCTGCAGCCGCTGCAGGTGTACCAGGCACCCCTCAGCCTGGCCACTGTGCCCCACCAGGCCCTGGGCCGCACCCAGTCCTCACCTGCTGCCCCAGGGGGCATGAAGAGCCCCCCAGACCAGCCCACCAAGCACCTCTTCACCACAGGTGTGGTCTACGACACGTTCATGCTGAAGCACCAGTGCATGTGCGGGAACACACACGTGCACCCGGAGCACGCTGGCCGGATTCAGAGCATCTGGTCCCGGCTGCAGGAAACAGGCCTGCTCAGCAAGTGTGAGCGGATTCGGGGTCGCAAAGCCACGCTGGACGAGATCCAGACGGTGCACTCCGAGTACCACACCCTGCTCTATGGGACCAGCCCCCTCAACCGCCAGAAGCTGGACAGCAAGAAGCTGCTGGGCCCCATCAGCCAGAAGATGTATGCTGTGCTGCCCTGCGGGGGCATCGGGGTGGACAGCGACACAGTGTGGAATGAGATGCACTCCTCCAGTGCTGTGCGCATGGCGGTGGGCTGCCTGGTGGAGCTGGCATTCAAGGTGGCTGCGGGGGAGCTCAAGAATGGATTTGCCATCATCCGGCCCCCAGGCCACCACGCGGAGGAATCCACAGCCATGGGATTCTGCTTCTTCAACTCTGTAGCCATCACAACCAAACTTCTGCAGCAGAAGCTGAACGTGGGCAAGGTTCTCATCGTGGACTGGGACATACACCACGGCAATGGCACCCAGCAAGCATTCTACAACGACCCCTCCGTGCTCTATATCTCTCTGCATCGCTATGACAATGGGAACTTCTTTCCAGGCTCTGGGGCTCCTGAAGAGGTTGGCGGAGGGCCGGGTGTGGGGTACAATGTGAACGTGGCATGGACGGGAGGTGTGGACCCCCCCATCGGAGACGTGGAGTACCTAACGGCCTTCAGGACAGTGGTGATGCCCATCGCCCACGAGTTCTCACCTGACGTGGTCCTGGTTTCCGCCGGGTTTGATGCTGTTGAGGGACACTTGTCTCCGTTGGGTGGCTACTCTGTCACCGCCAGATGTTTTGGCCACTTGACCAGGCAGCTGATGACGCTGGCAGGGGGCCGGGTGGTGCTGGCCCTGGAGGGAGGCCATGACTTGACCGCCATCTGTGATGCCTCTGAGGCCTGTGTCTCAGCTCTGCTCAGCGTGGAGCTGCAGCCCTTGGACGAGGCAGTCCTGCAACAAAAGCCCAACATCAATGCAGTGGCCACGCTAGAGAAAGTCATCGGGATCCAGAGCAAACACTGGAGCTGTGTGCAGAGGTTCGCTGCTGGTCTAGGCCGTTCCCTGCGGGAGGCCCAGGCAGGCGAGACAGAGGAGGCCGAGACTGTGAGCGCCATGGCCTTGCTGTCGGTGGGGGCCGAGCAGGCGCAGGCTGCTGCAGCCCGGGAGCACAGCCCCAGGCCGGCAGAGGAGCCCATGGAGCAGGAGCCTGCCCTGTGA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |