| Tag |
Content |
| WERAM ID |
WERAM-Bro-0021 |
| Ensembl Protein ID |
Bo1g151980.1 |
| Gene Name |
HD1 |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
3.30e-165 |
550.8 |
17 |
328 |
|
| Organism |
Brassica oleracea |
| Domain Profile |
HDAC Class-I
class-1.txt 1 kkvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdg 97
+kv+y+yd++vg+y+ygq+hpmkp+r+++th L+ +ygl ++++++kp a+ ++l++fh+++y++fl++++pe++++ +++lk+fnvgedcPvfdg
Bo1g151980.1 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDG 113
589********************************************************************************************** PP
class-1.txt 98 lfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlhhGDgveeafyttdrvmtvsfhkyg 194
l+++cq+++G+s+ ++ kLn++ +diainwaGGlhhakk+easGfcyvnDivlailellk+h+rvly+did+hhGDgveeafy+tdrvmtvsfhk+g
Bo1g151980.1 114 LYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFG 210
************************************************************************************************* PP
class-1.txt 195 eeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlpllvl 291
+ +fPgtG+++d+g ++gkyy++nvPl+dgidDesy+ +fk+++ kv+e+f+P avvlqcGaDsl+gDrlg+fnlsikghaecvkf++sfn+pll+l
Bo1g151980.1 211 D-YFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306
*.*********************************************************************************************** PP
class-1.txt 292 GGGGYtlrnvaRcwtyetavvl 313
GGGGYt+rnvaRcw+yet+v+l
Bo1g151980.1 307 GGGGYTIRNVARCWCYETGVAL 328
*******************986 PP
|
Protein Sequence
(Fasta) | MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ 60
VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK RFNVGEDCPV FDGLYSFCQT 120
YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY 180
VDIDIHHGDG VEEAFYATDR VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI 240
DDESYHLLFK PIMGKVMEIF KPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN 300
VPLLLLGGGG YTIRNVARCW CYETGVALGI EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN 360
KNSRQMLEVI RNDLLQNLSK LQHAPSVPFQ ERPPDTETPE VDEDQEDEDK RWDADSDMDV 420
DDDRKPIPSR VKREAVESDA KDKDGVKGVM ERGKGFEVGM EESGSTTKVS GVNSVGMEEA 480
GVKMEEEGTT NKSGGDQVFP KT 502Protein Fasta Sequence
>Bo1g151980.1|Class-I|Brassica oleracea
MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVEDKMPEHEYYEYFGPDYTLHVAPSNMENKNSRQMLEVIRNDLLQNLSKLQHAPSVPFQERPPDTETPEVDEDQEDEDKRWDADSDMDVDDDRKPIPSRVKREAVESDAKDKDGVKGVMERGKGFEVGMEESGSTTKVSGVNSVGMEEAGVKMEEEGTTNKSGGDQVFPKT |
Nucleotide Sequence
(Fasta) | ATGGACACCG GAGGAAACTC GCTGGCCTCT GGACCAGACG GTGTGAAGAG GAAAGTGTGC 60
TACTTCTACG ACCCGGAGGT TGGGAACTAC TACTACGGCC AAGGCCACCC CATGAAGCCT 120
CACCGCATCC GCATGACGCA CGCTCTCCTC GCTCACTACG GTCTCCTCCA GCACATGCAA 180
GTCCTCAAGC CTTTCCCCGC CCGTGACCGT GACCTCTGCC GCTTCCACGC CGACGACTAC 240
GTCTCCTTTC TCCGCAGCAT TACGCCCGAG ACTCAGCAGG ATCAGATCCG CCAGCTCAAG 300
CGGTTCAACG TTGGTGAAGA CTGTCCTGTC TTTGACGGGC TTTATTCCTT TTGTCAGACG 360
TATGCTGGTG GCTCTGTTGG TGGATCTGTT AAGCTTAACC ACGGGCTTTG TGATATTGCT 420
ATTAACTGGG CTGGTGGTCT CCATCATGCT AAAAAGTGTG AGGCCTCTGG CTTCTGCTAC 480
GTTAATGATA TCGTCTTAGC TATCCTTGAG CTTCTTAAGC AGCATGAGCG TGTTCTGTAT 540
GTTGATATCG ACATCCACCA CGGGGACGGA GTGGAGGAGG CGTTTTACGC TACCGACAGG 600
GTCATGACCG TCTCATTCCA CAAATTCGGA GATTACTTTC CCGGTACAGG CCACATACAA 660
GACATTGGCT ACGGAAGTGG AAAGTACTAT TCTCTCAACG TACCACTGGA CGATGGTATC 720
GACGACGAGA GCTATCATCT CTTGTTCAAA CCCATCATGG GGAAAGTGAT GGAAATTTTC 780
AAACCAGGTG CGGTCGTACT GCAGTGCGGC GCTGATTCCT TGTCTGGCGA TAGGCTCGGA 840
TGCTTTAACC TCTCCATCAA AGGCCACGCC GAGTGTGTCA AGTTCATGAG ATCTTTCAAC 900
GTTCCGTTAC TGCTCCTTGG TGGTGGTGGT TACACTATCC GCAACGTTGC GCGTTGCTGG 960
TGCTACGAGA CTGGAGTTGC GCTTGGGATC GAAGTCGAGG ACAAGATGCC GGAGCATGAG 1020
TACTATGAGT ACTTTGGTCC GGACTATACG CTTCACGTTG CTCCGAGTAA CATGGAGAAC 1080
AAGAACTCTC GGCAGATGCT TGAAGTGATT CGTAATGACT TGCTCCAGAA TCTCTCGAAG 1140
CTTCAGCATG CTCCTAGTGT GCCGTTTCAG GAAAGGCCGC CAGATACTGA GACTCCTGAG 1200
GTAGATGAAG ACCAAGAGGA TGAAGATAAA AGATGGGATG CAGATTCTGA CATGGATGTA 1260
GATGATGATC GCAAACCTAT ACCAAGCAGA GTGAAGAGAG AAGCTGTTGA ATCTGATGCA 1320
AAGGACAAGG ATGGAGTGAA AGGAGTGATG GAGCGTGGGA AAGGTTTTGA GGTGGGCATG 1380
GAGGAGAGTG GAAGCACCAC CAAGGTTTCA GGAGTAAACT CAGTGGGAAT GGAGGAAGCA 1440
GGTGTGAAAA TGGAAGAGGA AGGCACAACA AACAAGTCAG GGGGAGATCA AGTGTTTCCT 1500
AAAACATAA
Nucleotide Fasta Sequence
>Bo1g151980.1|Class-I|Brassica oleracea
ATGGACACCGGAGGAAACTCGCTGGCCTCTGGACCAGACGGTGTGAAGAGGAAAGTGTGCTACTTCTACGACCCGGAGGTTGGGAACTACTACTACGGCCAAGGCCACCCCATGAAGCCTCACCGCATCCGCATGACGCACGCTCTCCTCGCTCACTACGGTCTCCTCCAGCACATGCAAGTCCTCAAGCCTTTCCCCGCCCGTGACCGTGACCTCTGCCGCTTCCACGCCGACGACTACGTCTCCTTTCTCCGCAGCATTACGCCCGAGACTCAGCAGGATCAGATCCGCCAGCTCAAGCGGTTCAACGTTGGTGAAGACTGTCCTGTCTTTGACGGGCTTTATTCCTTTTGTCAGACGTATGCTGGTGGCTCTGTTGGTGGATCTGTTAAGCTTAACCACGGGCTTTGTGATATTGCTATTAACTGGGCTGGTGGTCTCCATCATGCTAAAAAGTGTGAGGCCTCTGGCTTCTGCTACGTTAATGATATCGTCTTAGCTATCCTTGAGCTTCTTAAGCAGCATGAGCGTGTTCTGTATGTTGATATCGACATCCACCACGGGGACGGAGTGGAGGAGGCGTTTTACGCTACCGACAGGGTCATGACCGTCTCATTCCACAAATTCGGAGATTACTTTCCCGGTACAGGCCACATACAAGACATTGGCTACGGAAGTGGAAAGTACTATTCTCTCAACGTACCACTGGACGATGGTATCGACGACGAGAGCTATCATCTCTTGTTCAAACCCATCATGGGGAAAGTGATGGAAATTTTCAAACCAGGTGCGGTCGTACTGCAGTGCGGCGCTGATTCCTTGTCTGGCGATAGGCTCGGATGCTTTAACCTCTCCATCAAAGGCCACGCCGAGTGTGTCAAGTTCATGAGATCTTTCAACGTTCCGTTACTGCTCCTTGGTGGTGGTGGTTACACTATCCGCAACGTTGCGCGTTGCTGGTGCTACGAGACTGGAGTTGCGCTTGGGATCGAAGTCGAGGACAAGATGCCGGAGCATGAGTACTATGAGTACTTTGGTCCGGACTATACGCTTCACGTTGCTCCGAGTAACATGGAGAACAAGAACTCTCGGCAGATGCTTGAAGTGATTCGTAATGACTTGCTCCAGAATCTCTCGAAGCTTCAGCATGCTCCTAGTGTGCCGTTTCAGGAAAGGCCGCCAGATACTGAGACTCCTGAGGTAGATGAAGACCAAGAGGATGAAGATAAAAGATGGGATGCAGATTCTGACATGGATGTAGATGATGATCGCAAACCTATACCAAGCAGAGTGAAGAGAGAAGCTGTTGAATCTGATGCAAAGGACAAGGATGGAGTGAAAGGAGTGATGGAGCGTGGGAAAGGTTTTGAGGTGGGCATGGAGGAGAGTGGAAGCACCACCAAGGTTTCAGGAGTAAACTCAGTGGGAATGGAGGAAGCAGGTGTGAAAATGGAAGAGGAAGGCACAACAAACAAGTCAGGGGGAGATCAAGTGTTTCCTAAAACATAA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
